Chy1G019400 (gene) Cucumber (hystrix) v1

Overview
NameChy1G019400
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionGAG1At protein
LocationchrH01: 24643903 .. 24645210 (-)
RNA-Seq ExpressionChy1G019400
SyntenyChy1G019400
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCGGCGAGGCCAAAAGCGGGGGAGCCAGCGGCGGAGCAGGTGGTTTCAGATCGAGAATGGAGCACTATTTATACAGCGGCGATAAAAAGCACGTCGCCGCTGGCATCGTCATCTTTGGTATCATCTTCGGCATTCCTTGGGCCCTCATGAATCGAGGTTTTTGTTCTTTCCTTTAACAATTTTTGTTTTTGTTACTCTATCGCCGATGATTTTTTGTTGCAGTTGAGAGAAATTGATGTGGGAAAACAAGTTTTTTTCCCGGGATTTGGAGAAGGGAGGGCTTTAAATATTGACGTATCAAGTGCACTAAGAAGATATTGATTCTTGAATGGAGTTATTTTTTAAACTTGTTAGTTTTTCTTGGAGAATTCAGCAATCTTTTGATTGCAACAGTGGACATTTGGAAGTATGTTCGATTTTCCAATGTGTAATTTAGGGTTTCAGAATCTTTGCAGCTTCAATAAGATATGCATATTCTTAGTCTTGTTTGCCTTTGGCAATTGGTACTGGGTGGCTTAGGGTTTAGGATTTGCAAGTTCTGCTGGTTGGGGTGCTCCTGTGATTTGGGAATGAGAAACTCTAGTCTATCAGGGTAATATCATTGTGGATTTTTATGATACTGATTTTTTTTACTTAAGAACTGTTGGGACTGTGTCTGATGGATGTGCTCTAGAACAACATATTTGAGTGATTATGTCTTCATATACAAACACCTCACTCTTAGATTGTTTTCATGGTTGACTTGGTTTAGCTAAACTGAAGTGATTATTTCTCATAAGATAAGATCATAGGCTCATAAATAGTGCCAATGTGACTACGTAAGCATAACTCAATTACTTTAGGCATATATATCAATCAAGTGATTACATGTTCAAATCCTCCAACATCAGATGTTGAGCTAAAGGAAATGCTCGTAATTAGTAAGTTTAGTAAGAGCCACCCAAAATACCTCTTGAAAATAGTTGTCAAAATATGTAGTCTTGAAAGTACTTTTTGAAACATATAGTTTGAAAACTATTTTTCGAAGAAACTTCCAAATGACCCCTACACATGAAGTAGAAGTGACACTTCGCAAGTCAATAGGTGGTGAAACAAGAATCTGTCCCTCTTTCCTCTTTTCCATACGGATTTGAGACTGTATTTTATTTCGATATGAGTTGTAGGAGGTTGTAATTCTACATGACTTATCCCTACTTAATTGTTTGCACTCAGGATCAAAACATCAGTCTCACCAAGATTACATGGAAAGAGCTGATAAAGCACGAAGTCAGAGACTCTCTTCAGGTGCATCATCAGCTAAATGA

mRNA sequence

ATGAGCGGCGAGGCCAAAAGCGGGGGAGCCAGCGGCGGAGCAGGTGGTTTCAGATCGAGAATGGAGCACTATTTATACAGCGGCGATAAAAAGCACGTCGCCGCTGGCATCGTCATCTTTGGTATCATCTTCGGCATTCCTTGGGCCCTCATGAATCGAGGATCAAAACATCAGTCTCACCAAGATTACATGGAAAGAGCTGATAAAGCACGAAGTCAGAGACTCTCTTCAGGTGCATCATCAGCTAAATGA

Coding sequence (CDS)

ATGAGCGGCGAGGCCAAAAGCGGGGGAGCCAGCGGCGGAGCAGGTGGTTTCAGATCGAGAATGGAGCACTATTTATACAGCGGCGATAAAAAGCACGTCGCCGCTGGCATCGTCATCTTTGGTATCATCTTCGGCATTCCTTGGGCCCTCATGAATCGAGGATCAAAACATCAGTCTCACCAAGATTACATGGAAAGAGCTGATAAAGCACGAAGTCAGAGACTCTCTTCAGGTGCATCATCAGCTAAATGA

Protein sequence

MSGEAKSGGASGGAGGFRSRMEHYLYSGDKKHVAAGIVIFGIIFGIPWALMNRGSKHQSHQDYMERADKARSQRLSSGASSAK*
Homology
BLAST of Chy1G019400 vs. ExPASy TrEMBL
Match: A0A5D3CFG0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G001610 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 3.7e-36
Identity = 81/83 (97.59%), Postives = 83/83 (100.00%), Query Frame = 0

Query: 1  MSGEAKSGGASGGAGGFRSRMEHYLYSGDKKHVAAGIVIFGIIFGIPWALMNRGSKHQSH 60
          MSGEAKSGGASGGAGGFRSRME+YLYSGDKKHVAAGIVIFGIIFGIPWALMNRGSKHQSH
Sbjct: 1  MSGEAKSGGASGGAGGFRSRMEYYLYSGDKKHVAAGIVIFGIIFGIPWALMNRGSKHQSH 60

Query: 61 QDYMERADKARSQRLSSGASSAK 84
          QDYMERADKARSQRLSSG+SSAK
Sbjct: 61 QDYMERADKARSQRLSSGSSSAK 83

BLAST of Chy1G019400 vs. ExPASy TrEMBL
Match: A0A1S3CEK3 (uncharacterized protein LOC103499845 OS=Cucumis melo OX=3656 GN=LOC103499845 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 3.7e-36
Identity = 81/83 (97.59%), Postives = 83/83 (100.00%), Query Frame = 0

Query: 1  MSGEAKSGGASGGAGGFRSRMEHYLYSGDKKHVAAGIVIFGIIFGIPWALMNRGSKHQSH 60
          MSGEAKSGGASGGAGGFRSRME+YLYSGDKKHVAAGIVIFGIIFGIPWALMNRGSKHQSH
Sbjct: 1  MSGEAKSGGASGGAGGFRSRMEYYLYSGDKKHVAAGIVIFGIIFGIPWALMNRGSKHQSH 60

Query: 61 QDYMERADKARSQRLSSGASSAK 84
          QDYMERADKARSQRLSSG+SSAK
Sbjct: 61 QDYMERADKARSQRLSSGSSSAK 83

BLAST of Chy1G019400 vs. ExPASy TrEMBL
Match: A0A6J1GP50 (uncharacterized protein LOC111455862 OS=Cucurbita moschata OX=3662 GN=LOC111455862 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 4.5e-34
Identity = 76/83 (91.57%), Postives = 80/83 (96.39%), Query Frame = 0

Query: 1  MSGEAKSGGASGGAGGFRSRMEHYLYSGDKKHVAAGIVIFGIIFGIPWALMNRGSKHQSH 60
          MSGEAKSGG+ GG GGFRSRMEHYLYSG+KKHVAAGIV+ GIIFGIPWALMNRGSKHQSH
Sbjct: 1  MSGEAKSGGSIGGGGGFRSRMEHYLYSGEKKHVAAGIVVIGIIFGIPWALMNRGSKHQSH 60

Query: 61 QDYMERADKARSQRLSSGASSAK 84
          QDYMERADKARSQRLSSG+SSAK
Sbjct: 61 QDYMERADKARSQRLSSGSSSAK 83

BLAST of Chy1G019400 vs. ExPASy TrEMBL
Match: A0A6J1JZC0 (uncharacterized protein LOC111488802 OS=Cucurbita maxima OX=3661 GN=LOC111488802 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 1.0e-33
Identity = 75/83 (90.36%), Postives = 80/83 (96.39%), Query Frame = 0

Query: 1  MSGEAKSGGASGGAGGFRSRMEHYLYSGDKKHVAAGIVIFGIIFGIPWALMNRGSKHQSH 60
          MSG+AKSGG+ GG GGFRSRMEHYLYSG+KKHVAAGIV+ GIIFGIPWALMNRGSKHQSH
Sbjct: 1  MSGDAKSGGSIGGGGGFRSRMEHYLYSGEKKHVAAGIVVIGIIFGIPWALMNRGSKHQSH 60

Query: 61 QDYMERADKARSQRLSSGASSAK 84
          QDYMERADKARSQRLSSG+SSAK
Sbjct: 61 QDYMERADKARSQRLSSGSSSAK 83

BLAST of Chy1G019400 vs. ExPASy TrEMBL
Match: A0A6J1DAT5 (uncharacterized protein LOC111018966 OS=Momordica charantia OX=3673 GN=LOC111018966 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 9.7e-29
Identity = 70/90 (77.78%), Postives = 74/90 (82.22%), Query Frame = 0

Query: 1  MSGEAKSGGASGGAG-------GFRSRMEHYLYSGDKKHVAAGIVIFGIIFGIPWALMNR 60
          M GE K GGASGG G       GFRSRMEH+LYSGDKKHVAAGI +  IIFGIPW LM+R
Sbjct: 1  MGGEGKIGGASGGGGGGGGGGAGFRSRMEHFLYSGDKKHVAAGIAVISIIFGIPWVLMSR 60

Query: 61 GSKHQSHQDYMERADKARSQRLSSGASSAK 84
          GSKHQSHQDYMERADKARSQRLSSG+S AK
Sbjct: 61 GSKHQSHQDYMERADKARSQRLSSGSSQAK 90

BLAST of Chy1G019400 vs. NCBI nr
Match: XP_004135879.1 (uncharacterized protein LOC101214375 [Cucumis sativus])

HSP 1 Score: 159 bits (401), Expect = 9.31e-49
Identity = 81/83 (97.59%), Postives = 83/83 (100.00%), Query Frame = 0

Query: 1  MSGEAKSGGASGGAGGFRSRMEHYLYSGDKKHVAAGIVIFGIIFGIPWALMNRGSKHQSH 60
          MSGEAKSGGASGGAGGFRSRMEHYLYSGDKKHVAAGIVIFGIIFGIPWALMNRGSKH+SH
Sbjct: 1  MSGEAKSGGASGGAGGFRSRMEHYLYSGDKKHVAAGIVIFGIIFGIPWALMNRGSKHRSH 60

Query: 61 QDYMERADKARSQRLSSGASSAK 83
          QDYMERADKARSQRLSSG+SSAK
Sbjct: 61 QDYMERADKARSQRLSSGSSSAK 83

BLAST of Chy1G019400 vs. NCBI nr
Match: XP_008461185.1 (PREDICTED: uncharacterized protein LOC103499845 [Cucumis melo] >KAA0058705.1 hypothetical protein E6C27_scaffold339G001750 [Cucumis melo var. makuwa] >TYK10511.1 hypothetical protein E5676_scaffold459G001610 [Cucumis melo var. makuwa])

HSP 1 Score: 158 bits (399), Expect = 1.88e-48
Identity = 81/83 (97.59%), Postives = 83/83 (100.00%), Query Frame = 0

Query: 1  MSGEAKSGGASGGAGGFRSRMEHYLYSGDKKHVAAGIVIFGIIFGIPWALMNRGSKHQSH 60
          MSGEAKSGGASGGAGGFRSRME+YLYSGDKKHVAAGIVIFGIIFGIPWALMNRGSKHQSH
Sbjct: 1  MSGEAKSGGASGGAGGFRSRMEYYLYSGDKKHVAAGIVIFGIIFGIPWALMNRGSKHQSH 60

Query: 61 QDYMERADKARSQRLSSGASSAK 83
          QDYMERADKARSQRLSSG+SSAK
Sbjct: 61 QDYMERADKARSQRLSSGSSSAK 83

BLAST of Chy1G019400 vs. NCBI nr
Match: XP_022953259.1 (uncharacterized protein LOC111455862 [Cucurbita moschata] >XP_023547796.1 uncharacterized protein LOC111806650 [Cucurbita pepo subsp. pepo] >KAG6575633.1 hypothetical protein SDJN03_26272, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014187.1 hypothetical protein SDJN02_24361 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 151 bits (381), Expect = 1.05e-45
Identity = 76/83 (91.57%), Postives = 80/83 (96.39%), Query Frame = 0

Query: 1  MSGEAKSGGASGGAGGFRSRMEHYLYSGDKKHVAAGIVIFGIIFGIPWALMNRGSKHQSH 60
          MSGEAKSGG+ GG GGFRSRMEHYLYSG+KKHVAAGIV+ GIIFGIPWALMNRGSKHQSH
Sbjct: 1  MSGEAKSGGSIGGGGGFRSRMEHYLYSGEKKHVAAGIVVIGIIFGIPWALMNRGSKHQSH 60

Query: 61 QDYMERADKARSQRLSSGASSAK 83
          QDYMERADKARSQRLSSG+SSAK
Sbjct: 61 QDYMERADKARSQRLSSGSSSAK 83

BLAST of Chy1G019400 vs. NCBI nr
Match: XP_022992483.1 (uncharacterized protein LOC111488802 [Cucurbita maxima])

HSP 1 Score: 150 bits (378), Expect = 3.01e-45
Identity = 75/83 (90.36%), Postives = 80/83 (96.39%), Query Frame = 0

Query: 1  MSGEAKSGGASGGAGGFRSRMEHYLYSGDKKHVAAGIVIFGIIFGIPWALMNRGSKHQSH 60
          MSG+AKSGG+ GG GGFRSRMEHYLYSG+KKHVAAGIV+ GIIFGIPWALMNRGSKHQSH
Sbjct: 1  MSGDAKSGGSIGGGGGFRSRMEHYLYSGEKKHVAAGIVVIGIIFGIPWALMNRGSKHQSH 60

Query: 61 QDYMERADKARSQRLSSGASSAK 83
          QDYMERADKARSQRLSSG+SSAK
Sbjct: 61 QDYMERADKARSQRLSSGSSSAK 83

BLAST of Chy1G019400 vs. NCBI nr
Match: XP_038897164.1 (uncharacterized protein LOC120085312 isoform X2 [Benincasa hispida])

HSP 1 Score: 142 bits (359), Expect = 6.27e-42
Identity = 71/79 (89.87%), Postives = 75/79 (94.94%), Query Frame = 0

Query: 1  MSGEAKSGGASGGAGGFRSRMEHYLYSGDKKHVAAGIVIFGIIFGIPWALMNRGSKHQSH 60
          MSGEAK GGA+GGAGGFRSRMEHYLYSG+KKHVAAGIV+ GIIFGIPW LMNRGSKHQSH
Sbjct: 1  MSGEAKRGGATGGAGGFRSRMEHYLYSGEKKHVAAGIVVIGIIFGIPWVLMNRGSKHQSH 60

Query: 61 QDYMERADKARSQRLSSGA 79
          QDYME+ADKARSQRLSS A
Sbjct: 61 QDYMEKADKARSQRLSSVA 79

BLAST of Chy1G019400 vs. TAIR 10
Match: AT1G80890.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16000.1); Has 41 Blast hits to 40 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 108.2 bits (269), Expect = 3.2e-24
Identity = 55/83 (66.27%), Postives = 66/83 (79.52%), Query Frame = 0

Query: 1  MSGEAKSGGASGGAGGFRSRMEHYLYSGDKKHVAAGIVIFGIIFGIPWALMNRGSKHQSH 60
          M  E+KS   + G GG R++MEHY+YSG+KKHV AGI I  IIFGIPW LMN+GSKH+SH
Sbjct: 1  MGNESKS---NLGGGGIRAKMEHYVYSGEKKHVLAGIGIISIIFGIPWYLMNQGSKHRSH 60

Query: 61 QDYMERADKARSQRLSSGASSAK 84
          QDY+E+ADKAR  RLSS +SS K
Sbjct: 61 QDYLEKADKARKARLSSSSSSDK 80

BLAST of Chy1G019400 vs. TAIR 10
Match: AT1G16000.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80890.1); Has 41 Blast hits to 40 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 105.9 bits (263), Expect = 1.6e-23
Identity = 53/86 (61.63%), Postives = 65/86 (75.58%), Query Frame = 0

Query: 1  MSGEAKSGG---ASGGAGGFRSRMEHYLYSGDKKHVAAGIVIFGIIFGIPWALMNRGSKH 60
          M  E K+ G   +  G GGFR++MEHY+YSG+KKHV  GI I  IIFG+PW LM +GSKH
Sbjct: 1  MGNETKTNGGPASMAGGGGFRAKMEHYVYSGEKKHVLVGIGIVTIIFGVPWYLMTQGSKH 60

Query: 61 QSHQDYMERADKARSQRLSSGASSAK 84
          QSHQDYM++ADKAR  RLSS +S+ K
Sbjct: 61 QSHQDYMDKADKARKARLSSSSSANK 86

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CFG03.7e-3697.59Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3CEK33.7e-3697.59uncharacterized protein LOC103499845 OS=Cucumis melo OX=3656 GN=LOC103499845 PE=... [more]
A0A6J1GP504.5e-3491.57uncharacterized protein LOC111455862 OS=Cucurbita moschata OX=3662 GN=LOC1114558... [more]
A0A6J1JZC01.0e-3390.36uncharacterized protein LOC111488802 OS=Cucurbita maxima OX=3661 GN=LOC111488802... [more]
A0A6J1DAT59.7e-2977.78uncharacterized protein LOC111018966 OS=Momordica charantia OX=3673 GN=LOC111018... [more]
Match NameE-valueIdentityDescription
XP_004135879.19.31e-4997.59uncharacterized protein LOC101214375 [Cucumis sativus][more]
XP_008461185.11.88e-4897.59PREDICTED: uncharacterized protein LOC103499845 [Cucumis melo] >KAA0058705.1 hyp... [more]
XP_022953259.11.05e-4591.57uncharacterized protein LOC111455862 [Cucurbita moschata] >XP_023547796.1 unchar... [more]
XP_022992483.13.01e-4590.36uncharacterized protein LOC111488802 [Cucurbita maxima][more]
XP_038897164.16.27e-4289.87uncharacterized protein LOC120085312 isoform X2 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
AT1G80890.13.2e-2466.27unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT1G16000.11.6e-2361.63unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 55..83
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 58..72
NoneNo IPR availablePANTHERPTHR35990GAG1AT PROTEINcoord: 1..82

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy1G019400.1Chy1G019400.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane