Chy1G016820 (gene) Cucumber (hystrix) v1

Overview


Name	Chy1G016820
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Nucleolar protein 16
Location	chrH01: 22757950 .. 22759388 (+)
RNA-Seq Expression	Chy1G016820
Synteny	Chy1G016820

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAGGTCTCGAAGAAAGTACAAGAAATCTCGCCCAAAAGTTAAGGTTGGTTTGCCCAAAAGGAACCCTAATGTCTTCAAGCCATCTTTTTGCATGCCGCCTAAGCTCCGCTCCTTGCTCGCCGAACAATTTGAAGAAGATCCAACATGGGATGAGAAAGGAAGTGTCATTCAAAATTATAAATCCTTCGGTGTTATTTCTAATCCTAATTTGCTCAGTGTTCGTTCCCGCACTGATCACATCGTTGAGAGCGACTCTCTCCAAGTCCCGCTATCCGATGACCCTGACTCCGTTCTTGATTCTTCCGGCAGTGATGTTGAAGAGGACGGTGAGTATGAGTTTGAATTTGTTATCTTTCGGTATTGTTTTAAATTTCAGCTGTGTCTCCGTGAATCTATCTGGGTTTTTTGGAATTTTTGGATTTGAAAGGAACGGGATGGTTTTGAGCGTAGATAATGTGATGTTTTCAAATTTATAAGTATATTTGTTGGGATGAAATTAGTTAGCTTTTAGACATATGATGCCTTCTGTTCCAGTTTTAGTGAATTGGTCACTGGGAATAGTTTCTGCAATCTGTTAATACTTTGGTGCTCTTCACCTGAAAGGAGTCAAAGCTTAGGAAAGATTTGAAATTTCTAAATAGCTTTAACTTTAAGAGAACTGGCAACTTTCTATCGAACCAAAATTGCATCCAAACTGGTTGCATTTTGTTGGTCATTGATATATTTGGGGAACCTTTTGCTGGATCAGGTTATATGAAATGAAACAAAAGGTCAAGCTGATGGGTTGCGGTAATTTAATCATATCAATGCTCCATCACTCTCCCTTCACTTGTGATTTGAAAATTTGTCGAAGGTCTATCAAATGAAAATCAATATTACTTGTTGAGAAAATGACATTACAGTTGTAACTCAGAAGTTTAAGCTCGTGGGTTATTGTAATTTTAGTTATTCCAATACTTCAACAACATAAAATGATGGTTGAGATCATTGTAATGTCTTAATTGTCATGATTATGAAGTTTCATGAGGATGTCAAAGCAATTTTTTAGTTTTGTTTCTGATTTCATCTTGTTCTTTCTTTTGTCTTCTTTAGATTTGAAAACAGCATTGGGAAAGAAGCGCAAAGATGGGAAATCTGCACCTCTGCAACCGTTGACCACACTTCAGCGTGTTCATGTCGGTAAGCTAATCGAGAAATATGGAGATGATTACCAGGTAAGCTTCAATGTTGCTTGCTTGCTTTTAAATCTGAGTGATAGGCATTGTTTTTTTTTATTTTTTATTTTCCTCATTGAAAATTGCTCTGCAGAGGATGTTTATGGATACAAAGCTGAACTCAATGCAGCATTCTGTTGCCACTCTGGAGAAACTATGCAAAAGATATAACAGTTGTTTAGATTCGAATCCATTGATATTGACTCGTAAACGACGATAG

mRNA sequence

ATGGGAAGGTCTCGAAGAAAGTACAAGAAATCTCGCCCAAAAGTTAAGGTTGGTTTGCCCAAAAGGAACCCTAATGTCTTCAAGCCATCTTTTTGCATGCCGCCTAAGCTCCGCTCCTTGCTCGCCGAACAATTTGAAGAAGATCCAACATGGGATGAGAAAGGAAGTGTCATTCAAAATTATAAATCCTTCGGTGTTATTTCTAATCCTAATTTGCTCAGTGTTCGTTCCCGCACTGATCACATCGTTGAGAGCGACTCTCTCCAAGTCCCGCTATCCGATGACCCTGACTCCGTTCTTGATTCTTCCGGCAGTGATGTTGAAGAGGACGATTTGAAAACAGCATTGGGAAAGAAGCGCAAAGATGGGAAATCTGCACCTCTGCAACCGTTGACCACACTTCAGCGTGTTCATGTCGGTAAGCTAATCGAGAAATATGGAGATGATTACCAGAGGATGTTTATGGATACAAAGCTGAACTCAATGCAGCATTCTGTTGCCACTCTGGAGAAACTATGCAAAAGATATAACAGTTGTTTAGATTCGAATCCATTGATATTGACTCGTAAACGACGATAG

Coding sequence (CDS)

ATGGGAAGGTCTCGAAGAAAGTACAAGAAATCTCGCCCAAAAGTTAAGGTTGGTTTGCCCAAAAGGAACCCTAATGTCTTCAAGCCATCTTTTTGCATGCCGCCTAAGCTCCGCTCCTTGCTCGCCGAACAATTTGAAGAAGATCCAACATGGGATGAGAAAGGAAGTGTCATTCAAAATTATAAATCCTTCGGTGTTATTTCTAATCCTAATTTGCTCAGTGTTCGTTCCCGCACTGATCACATCGTTGAGAGCGACTCTCTCCAAGTCCCGCTATCCGATGACCCTGACTCCGTTCTTGATTCTTCCGGCAGTGATGTTGAAGAGGACGATTTGAAAACAGCATTGGGAAAGAAGCGCAAAGATGGGAAATCTGCACCTCTGCAACCGTTGACCACACTTCAGCGTGTTCATGTCGGTAAGCTAATCGAGAAATATGGAGATGATTACCAGAGGATGTTTATGGATACAAAGCTGAACTCAATGCAGCATTCTGTTGCCACTCTGGAGAAACTATGCAAAAGATATAACAGTTGTTTAGATTCGAATCCATTGATATTGACTCGTAAACGACGATAG

Protein sequence

MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPLSDDPDSVLDSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYNSCLDSNPLILTRKRR*

Homology

[Close]

BLAST of Chy1G016820 vs. ExPASy TrEMBL
Match: A0A0A0KAV9 (Nucleolar protein 16 OS=Cucumis sativus OX=3659 GN=Csa_7G396460 PE=3 SV=1)

HSP 1 Score: 377.9 bits (969), Expect = 2.6e-101
Identity = 190/192 (98.96%), Postives = 191/192 (99.48%), Query Frame = 0


Query: 1   MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQN 60
           MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQN
Sbjct: 1   MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQN 60

Query: 61  YKSFGVISNPNLLSVRSRTDHIVESDSLQVPLSDDPDSVLDSSGSDVEEDDLKTALGKKR 120
           YKSFGVISNPNLLSVRSRTDHIVESDSLQVP SDDPD+VLDSSGSDVEEDDLKTALGKKR
Sbjct: 61  YKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSDDPDTVLDSSGSDVEEDDLKTALGKKR 120

Query: 121 KDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYNSCL 180
           KDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYNSCL
Sbjct: 121 KDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYNSCL 180

Query: 181 DSNPLILTRKRR 193
           DSNPLILTRKRR
Sbjct: 181 DSNPLILTRKRR 192

[Close]

BLAST of Chy1G016820 vs. ExPASy TrEMBL
Match: A0A5A7VLA5 (Nucleolar protein 16 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00570 PE=3 SV=1)

HSP 1 Score: 372.1 bits (954), Expect = 1.4e-99
Identity = 187/190 (98.42%), Postives = 188/190 (98.95%), Query Frame = 0


Query: 1   MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQN 60
           MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQN
Sbjct: 1   MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQN 60

Query: 61  YKSFGVISNPNLLSVRSRTDHIVESDSLQVPLSDDPDSVLDSSGSDVEEDDLKTALGKKR 120
           YKSFGVISNPNLLSVRSRTDHIVESDSLQVP SDDPDSVLDSSGSDVEEDDLKTALGKKR
Sbjct: 61  YKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSDDPDSVLDSSGSDVEEDDLKTALGKKR 120

Query: 121 KDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYNSCL 180
           KDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRY+SCL
Sbjct: 121 KDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYHSCL 180

Query: 181 DSNPLILTRK 191
           D NPLILTRK
Sbjct: 181 DKNPLILTRK 190

[Close]

BLAST of Chy1G016820 vs. ExPASy TrEMBL
Match: A0A1S3BSM4 (Nucleolar protein 16 OS=Cucumis melo OX=3656 GN=LOC103492822 PE=3 SV=1)

HSP 1 Score: 372.1 bits (954), Expect = 1.4e-99
Identity = 187/190 (98.42%), Postives = 188/190 (98.95%), Query Frame = 0


Query: 1   MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQN 60
           MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQN
Sbjct: 1   MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQN 60

Query: 61  YKSFGVISNPNLLSVRSRTDHIVESDSLQVPLSDDPDSVLDSSGSDVEEDDLKTALGKKR 120
           YKSFGVISNPNLLSVRSRTDHIVESDSLQVP SDDPDSVLDSSGSDVEEDDLKTALGKKR
Sbjct: 61  YKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSDDPDSVLDSSGSDVEEDDLKTALGKKR 120

Query: 121 KDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYNSCL 180
           KDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRY+SCL
Sbjct: 121 KDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYHSCL 180

Query: 181 DSNPLILTRK 191
           D NPLILTRK
Sbjct: 181 DKNPLILTRK 190

[Close]

BLAST of Chy1G016820 vs. ExPASy TrEMBL
Match: A0A6J1JMQ4 (Nucleolar protein 16 OS=Cucurbita maxima OX=3661 GN=LOC111488281 PE=3 SV=1)

HSP 1 Score: 345.1 bits (884), Expect = 1.9e-91
Identity = 174/193 (90.16%), Postives = 183/193 (94.82%), Query Frame = 0


Query: 1   MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQN 60
           MGRSRRKYK+SR KV+VGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDP WDEK SVI N
Sbjct: 1   MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN 60

Query: 61  YKSFGVISNPNLLSVRSRTDHIVESDSLQV----PLSDDPDSVLDSSGSDVEEDDLKTAL 120
           YKSFGV+SNPNLLSVRSRTDHIVESDSLQV    P SDDPDSVLDSSGSDVEEDDLKTAL
Sbjct: 61  YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSLPPSDDPDSVLDSSGSDVEEDDLKTAL 120

Query: 121 GKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRY 180
           GKKRKDGKSAPL+PLTT+QRVHVG+LIEKYGDD++RMFMDTKLNSMQHSVATLEKLCKRY
Sbjct: 121 GKKRKDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRY 180

Query: 181 NSCLDSNPLILTR 190
           +SCLD NPLILTR
Sbjct: 181 HSCLDKNPLILTR 193

[Close]

BLAST of Chy1G016820 vs. ExPASy TrEMBL
Match: A0A6J1GRW5 (Nucleolar protein 16 OS=Cucurbita moschata OX=3662 GN=LOC111456462 PE=3 SV=1)

HSP 1 Score: 341.7 bits (875), Expect = 2.1e-90
Identity = 172/193 (89.12%), Postives = 182/193 (94.30%), Query Frame = 0


Query: 1   MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQN 60
           MGRSRRKYK+SR KV+VGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDP WDEK SVI N
Sbjct: 1   MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN 60

Query: 61  YKSFGVISNPNLLSVRSRTDHIVESDSLQV----PLSDDPDSVLDSSGSDVEEDDLKTAL 120
           YKSFGV+SNPNLLSVRSRTDHIVESD LQV    P SDDPDSVLDSSGSDVEEDDLKTAL
Sbjct: 61  YKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDPDSVLDSSGSDVEEDDLKTAL 120

Query: 121 GKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRY 180
           GKKR+DGKSAPL+PLTT+QRVHVG+LIEKYGDD++RMFMDTKLNSMQHSVATLEKLCKRY
Sbjct: 121 GKKRRDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRY 180

Query: 181 NSCLDSNPLILTR 190
           +SCLD NPLILTR
Sbjct: 181 HSCLDKNPLILTR 193

[Close]

BLAST of Chy1G016820 vs. NCBI nr
Match: XP_004136032.1 (uncharacterized protein LOC101209910 [Cucumis sativus] >KGN44931.1 hypothetical protein Csa_016440 [Cucumis sativus])

HSP 1 Score: 377 bits (967), Expect = 1.46e-131
Identity = 190/192 (98.96%), Postives = 191/192 (99.48%), Query Frame = 0


Query: 1   MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQN 60
           MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQN
Sbjct: 1   MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQN 60

Query: 61  YKSFGVISNPNLLSVRSRTDHIVESDSLQVPLSDDPDSVLDSSGSDVEEDDLKTALGKKR 120
           YKSFGVISNPNLLSVRSRTDHIVESDSLQVP SDDPD+VLDSSGSDVEEDDLKTALGKKR
Sbjct: 61  YKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSDDPDTVLDSSGSDVEEDDLKTALGKKR 120

Query: 121 KDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYNSCL 180
           KDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYNSCL
Sbjct: 121 KDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYNSCL 180

Query: 181 DSNPLILTRKRR 192
           DSNPLILTRKRR
Sbjct: 181 DSNPLILTRKRR 192

[Close]

BLAST of Chy1G016820 vs. NCBI nr
Match: XP_008451586.1 (PREDICTED: uncharacterized protein LOC103492822 [Cucumis melo] >KAA0068000.1 nucleolar protein 16-like [Cucumis melo var. makuwa] >TYK18127.1 nucleolar protein 16-like [Cucumis melo var. makuwa])

HSP 1 Score: 371 bits (952), Expect = 2.64e-129
Identity = 187/190 (98.42%), Postives = 188/190 (98.95%), Query Frame = 0


Query: 1   MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQN 60
           MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQN
Sbjct: 1   MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQN 60

Query: 61  YKSFGVISNPNLLSVRSRTDHIVESDSLQVPLSDDPDSVLDSSGSDVEEDDLKTALGKKR 120
           YKSFGVISNPNLLSVRSRTDHIVESDSLQVP SDDPDSVLDSSGSDVEEDDLKTALGKKR
Sbjct: 61  YKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSDDPDSVLDSSGSDVEEDDLKTALGKKR 120

Query: 121 KDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYNSCL 180
           KDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRY+SCL
Sbjct: 121 KDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYHSCL 180

Query: 181 DSNPLILTRK 190
           D NPLILTRK
Sbjct: 181 DKNPLILTRK 190

[Close]

BLAST of Chy1G016820 vs. NCBI nr
Match: XP_038898931.1 (nucleolar protein 16 [Benincasa hispida])

HSP 1 Score: 348 bits (893), Expect = 3.12e-120
Identity = 176/195 (90.26%), Postives = 185/195 (94.87%), Query Frame = 0


Query: 1   MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQN 60
           MGRSRRKYK+SRPKVKVGLPKR+PNVFKPSFCMPPKLRSLLAEQFEEDPTWD+K  VI N
Sbjct: 1   MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWDDKARVIHN 60

Query: 61  YKSFGVISNPNLLSVRSRTDHIVESDSLQVPLS----DDPDSVLDSSGSDVEEDDLKTAL 120
           YKSFGVISNPNLLSVRSRTDHIVESDSLQVP S    D+PDSVLDSSGSDVEEDDLKTAL
Sbjct: 61  YKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSQPPSDEPDSVLDSSGSDVEEDDLKTAL 120

Query: 121 GKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRY 180
           GKKRKDGKSAPLQPLTT+QRVHVG+LIEKYGDDY+RMFMDTKLNSMQHSVATLEKLCKRY
Sbjct: 121 GKKRKDGKSAPLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRY 180

Query: 181 NSCLDSNPLILTRKR 191
           +SCLD NPLIL RK+
Sbjct: 181 HSCLDKNPLILIRKK 195

[Close]

BLAST of Chy1G016820 vs. NCBI nr
Match: XP_022991747.1 (uncharacterized protein LOC111488281 [Cucurbita maxima])

HSP 1 Score: 344 bits (882), Expect = 1.38e-118
Identity = 174/193 (90.16%), Postives = 183/193 (94.82%), Query Frame = 0


Query: 1   MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQN 60
           MGRSRRKYK+SR KV+VGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDP WDEK SVI N
Sbjct: 1   MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN 60

Query: 61  YKSFGVISNPNLLSVRSRTDHIVESDSLQVPLS----DDPDSVLDSSGSDVEEDDLKTAL 120
           YKSFGV+SNPNLLSVRSRTDHIVESDSLQVP S    DDPDSVLDSSGSDVEEDDLKTAL
Sbjct: 61  YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSLPPSDDPDSVLDSSGSDVEEDDLKTAL 120

Query: 121 GKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRY 180
           GKKRKDGKSAPL+PLTT+QRVHVG+LIEKYGDD++RMFMDTKLNSMQHSVATLEKLCKRY
Sbjct: 121 GKKRKDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRY 180

Query: 181 NSCLDSNPLILTR 189
           +SCLD NPLILTR
Sbjct: 181 HSCLDKNPLILTR 193

[Close]

BLAST of Chy1G016820 vs. NCBI nr
Match: XP_023547523.1 (uncharacterized protein LOC111806441 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 342 bits (877), Expect = 7.98e-118
Identity = 173/193 (89.64%), Postives = 182/193 (94.30%), Query Frame = 0


Query: 1   MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQN 60
           MGRSRRKYK+SR KV+VGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDP WDEK SVI N
Sbjct: 1   MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN 60

Query: 61  YKSFGVISNPNLLSVRSRTDHIVESDSLQVPLS----DDPDSVLDSSGSDVEEDDLKTAL 120
           YKSFGV+SNPNLLSVRSRTDHIVESDSLQVP S    DDPDSVLDSSGSDVEEDDLKTAL
Sbjct: 61  YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSLPPSDDPDSVLDSSGSDVEEDDLKTAL 120

Query: 121 GKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRY 180
           GKKRKDGKSAPL+PLTT+QRVHVG+LIEKYGDD++RMFMDTKLNSMQHSVATLEKLCKRY
Sbjct: 121 GKKRKDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRY 180

Query: 181 NSCLDSNPLILTR 189
           + CLD NPLILTR
Sbjct: 181 HCCLDKNPLILTR 193

[Close]

BLAST of Chy1G016820 vs. TAIR 10
Match: AT1G02870.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosome biogenesis protein Nop16 (InterPro:IPR019002); Has 104 Blast hits to 104 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 63; Plants - 35; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). )

HSP 1 Score: 239.6 bits (610), Expect = 2.1e-63
Identity = 121/196 (61.73%), Postives = 153/196 (78.06%), Query Frame = 0


Query: 1   MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQN 60
           M RSRRKY+ SR KV+V LPK+NPN+FKP+F  PPKLR+L+    ++ P WD++ SVIQN
Sbjct: 1   MARSRRKYRNSRAKVRVALPKKNPNIFKPAFNFPPKLRALMG---DDVPEWDDQASVIQN 60

Query: 61  YKSFGVISNPNLLSVRSRTDHIVESDSLQV-----PLSDDP---DSVLDSSGSDVEEDDL 120
           YKSFGVISNPNLL +R+RTDH+++ DSL V     P +DDP   +     SGS++EEDDL
Sbjct: 61  YKSFGVISNPNLLGIRARTDHMIQDDSLNVPPPVEPPTDDPIAKEFEPIDSGSELEEDDL 120

Query: 121 KTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKL 180
           KTALGK+RKDGKSAPLQPLTT+QR H+ +L+EK+GDD + M+ D KLNSMQHSVATL KL
Sbjct: 121 KTALGKQRKDGKSAPLQPLTTMQRTHIRRLVEKHGDDIEGMYRDRKLNSMQHSVATLRKL 180

Query: 181 CKRYNSCLDSNPLILT 189
           C RY    D NP++++
Sbjct: 181 CTRYQIYKDKNPILVS 193

The following BLAST results are available for this feature:

BLAST of Chy1G016820 vs.


Match Name	E-value	Identity	Description

BLAST of Chy1G016820 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAV9	2.6e-101	98.96	Nucleolar protein 16 OS=Cucumis sativus OX=3659 GN=Csa_7G396460 PE=3 SV=1	[more]
A0A5A7VLA5	1.4e-99	98.42	Nucleolar protein 16 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411...	[more]
A0A1S3BSM4	1.4e-99	98.42	Nucleolar protein 16 OS=Cucumis melo OX=3656 GN=LOC103492822 PE=3 SV=1	[more]
A0A6J1JMQ4	1.9e-91	90.16	Nucleolar protein 16 OS=Cucurbita maxima OX=3661 GN=LOC111488281 PE=3 SV=1	[more]
A0A6J1GRW5	2.1e-90	89.12	Nucleolar protein 16 OS=Cucurbita moschata OX=3662 GN=LOC111456462 PE=3 SV=1	[more]

BLAST of Chy1G016820 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004136032.1	1.46e-131	98.96	uncharacterized protein LOC101209910 [Cucumis sativus] >KGN44931.1 hypothetical ...	[more]
XP_008451586.1	2.64e-129	98.42	PREDICTED: uncharacterized protein LOC103492822 [Cucumis melo] >KAA0068000.1 nuc...	[more]
XP_038898931.1	3.12e-120	90.26	nucleolar protein 16 [Benincasa hispida]	[more]
XP_022991747.1	1.38e-118	90.16	uncharacterized protein LOC111488281 [Cucurbita maxima]	[more]
XP_023547523.1	7.98e-118	89.64	uncharacterized protein LOC111806441 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Chy1G016820 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G02870.1	2.1e-63	61.73	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019002	Ribosome biogenesis protein Nop16	PFAM	PF09420	Nop16	coord: 3..74 e-value: 1.4E-6 score: 28.5 coord: 106..176 e-value: 1.6E-17 score: 64.2
IPR019002	Ribosome biogenesis protein Nop16	PANTHER	PTHR13243	HSPC111 PROTEIN-RELATED	coord: 1..179
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 106..125
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 91..129
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..17
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy1G016820.1	Chy1G016820.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042273	ribosomal large subunit biogenesis
cellular_component	GO:0005730	nucleolus