Chy1G016620 (gene) Cucumber (hystrix) v1

Overview


Name	Chy1G016620
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Nuclear transcription factor Y subunit B
Location	chrH01: 22570705 .. 22571390 (+)
RNA-Seq Expression	Chy1G016620
Synteny	Chy1G016620

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGAAAACACAGGCATGCCAGAGAGATCCATAGAATTTAAGTACGATTTCACCGGCGGTGGCAGTAGCGGAGTTGGTGGTAGCACAGGTGGTTCGAGTGAGGAAGCTGGTAACGGCGTTGGCGGGGTGGTAAAAGAGCAAGATCGGTTACTTCCAATAGCAAATGTGGGGAGGATAATGAAGCAAATTCTACCTCCAAATGCCAAAATCTCAAAAGAAGCTAAAGAAACTATGCAAGAATGTGTGTCGGAGTTCATCAGTTTCGTGACGGGGGAGGCGTCAGATAAGTGCCATAAGGAGAAGAGGAAGACTGTTAATGGTGATGATATTTGCTGTGCTTTGGCTACACTTGGATTTGATGATTATGCTGAGCCTTTGAGAAGGTATTTGGTTAGGTATAGAGATATGGAAGGGGAGAGAGTTCAACAAAATAAGGGATGTTGCAATAACAGTAGTAATAATAATAATAACGATGGATGAGAGAAATAATTGGAGAAATTTGCCTCAAAGGATTTGGAAAGGAAAAAAAATTGAACTTTCCTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTCTTCAATTGGGTATTTCTTTTCTTTTTTTGAAGTTTGTTAAACAGGATAAGCTCAAATGGGGAAATGGGGGAAATGGAGAAATGTGA

mRNA sequence

ATGGATGAAAACACAGGCATGCCAGAGAGATCCATAGAATTTAAGTACGATTTCACCGGCGGTGGCAGTAGCGGAGTTGGTGGTAGCACAGGTGGTTCGAGTGAGGAAGCTGGTAACGGCGTTGGCGGGGTGGTAAAAGAGCAAGATCGGTTACTTCCAATAGCAAATGTGGGGAGGATAATGAAGCAAATTCTACCTCCAAATGCCAAAATCTCAAAAGAAGCTAAAGAAACTATGCAAGAATGTGTGTCGGAGTTCATCAGTTTCGTGACGGGGGAGGCGTCAGATAAGTGCCATAAGGAGAAGAGGAAGACTGTTAATGGTGATGATATTTGCTGTGCTTTGGCTACACTTGGATTTGATGATTATGCTGAGCCTTTGAGAAGGTATTTGGATAAGCTCAAATGGGGAAATGGGGGAAATGGAGAAATGTGA

Coding sequence (CDS)

ATGGATGAAAACACAGGCATGCCAGAGAGATCCATAGAATTTAAGTACGATTTCACCGGCGGTGGCAGTAGCGGAGTTGGTGGTAGCACAGGTGGTTCGAGTGAGGAAGCTGGTAACGGCGTTGGCGGGGTGGTAAAAGAGCAAGATCGGTTACTTCCAATAGCAAATGTGGGGAGGATAATGAAGCAAATTCTACCTCCAAATGCCAAAATCTCAAAAGAAGCTAAAGAAACTATGCAAGAATGTGTGTCGGAGTTCATCAGTTTCGTGACGGGGGAGGCGTCAGATAAGTGCCATAAGGAGAAGAGGAAGACTGTTAATGGTGATGATATTTGCTGTGCTTTGGCTACACTTGGATTTGATGATTATGCTGAGCCTTTGAGAAGGTATTTGGATAAGCTCAAATGGGGAAATGGGGGAAATGGAGAAATGTGA

Protein sequence

MDENTGMPERSIEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLDKLKWGNGGNGEM*

Homology

[Close]

BLAST of Chy1G016620 vs. ExPASy Swiss-Prot
Match: O82248 (Nuclear transcription factor Y subunit B-5 OS=Arabidopsis thaliana OX=3702 GN=NFYB5 PE=1 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 2.0e-39
Identity = 77/92 (83.70%), Postives = 84/92 (91.30%), Query Frame = 0


Query: 44  VVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKR 103
           +VKEQDRLLPIANVGRIMK ILP NAK+SKEAKETMQECVSEFISFVTGEASDKCHKEKR
Sbjct: 48  MVKEQDRLLPIANVGRIMKNILPANAKVSKEAKETMQECVSEFISFVTGEASDKCHKEKR 107

Query: 104 KTVNGDDICCALATLGFDDYAEPLRRYLDKLK 136
           KTVNGDDIC A+A LGFDDYA  L++YL + +
Sbjct: 108 KTVNGDDICWAMANLGFDDYAAQLKKYLHRYR 139

[Close]

BLAST of Chy1G016620 vs. ExPASy Swiss-Prot
Match: Q60EQ4 (Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYB3 PE=1 SV=2)

HSP 1 Score: 151.4 bits (381), Expect = 8.0e-36
Identity = 74/116 (63.79%), Postives = 89/116 (76.72%), Query Frame = 0


Query: 20  GGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETM 79
           GGGS   G   GG     G G GG V+EQDR LPIAN+ RIMK+ +P N KI+K+AKET+
Sbjct: 11  GGGSHESGSPRGGGGGGGGGGGGGGVREQDRFLPIANISRIMKKAIPANGKIAKDAKETV 70

Query: 80  QECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLDKLK 136
           QECVSEFISF+T EASDKC +EKRKT+NGDD+  A+ATLGF+DY EPL+ YL K +
Sbjct: 71  QECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYR 126

[Close]

BLAST of Chy1G016620 vs. ExPASy Swiss-Prot
Match: P25209 (Nuclear transcription factor Y subunit B OS=Zea mays OX=4577 GN=NFY2 PE=2 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 4.0e-35
Identity = 72/113 (63.72%), Postives = 88/113 (77.88%), Query Frame = 0


Query: 23  SSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQEC 82
           S G GG +  S    G G GG V+EQDR LPIAN+ RIMK+ +P N KI+K+AKET+QEC
Sbjct: 7   SPGGGGGSHESGSPRGGGGGGSVREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQEC 66

Query: 83  VSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLDKLK 136
           VSEFISF+T EASDKC +EKRKT+NGDD+  A+ATLGF+DY EPL+ YL K +
Sbjct: 67  VSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYR 119

[Close]

BLAST of Chy1G016620 vs. ExPASy Swiss-Prot
Match: Q9SLG0 (Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana OX=3702 GN=NFYB1 PE=1 SV=2)

HSP 1 Score: 147.9 bits (372), Expect = 8.9e-35
Identity = 75/115 (65.22%), Postives = 91/115 (79.13%), Query Frame = 0


Query: 34  SEEAGNG--VGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVT 93
           S  AG+G   GG V+EQDR LPIAN+ RIMK+ LPPN KI K+AK+T+QECVSEFISF+T
Sbjct: 6   SSPAGDGGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFISFIT 65

Query: 94  GEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLDK---LKWGNGGNGE 144
            EASDKC KEKRKTVNGDD+  A+ATLGF+DY EPL+ YL +   L+  N G+G+
Sbjct: 66  SEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGDNKGSGK 120

[Close]

BLAST of Chy1G016620 vs. ExPASy Swiss-Prot
Match: Q9SIT9 (Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana OX=3702 GN=NFYB7 PE=1 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 3.4e-34
Identity = 75/114 (65.79%), Postives = 86/114 (75.44%), Query Frame = 0


Query: 22  GSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQE 81
           GS GV  +  GS     N      KEQDR LPIANVGRIMK++LP N KISK+AKET+QE
Sbjct: 11  GSPGVAETNPGSPSSKTNNNNNNNKEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQE 70

Query: 82  CVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLDKLK 136
           CVSEFISFVTGEASDKC +EKRKT+NGDDI  A+ TLGF+DY  PL+ YL K +
Sbjct: 71  CVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKVYLCKYR 124

[Close]

BLAST of Chy1G016620 vs. ExPASy TrEMBL
Match: A0A0A0K954 (CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G395250 PE=3 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 5.3e-67
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0


Query: 1   MDENTGMPERSIEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60
           MDENTGMPERSIEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI
Sbjct: 1   MDENTGMPERSIEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLRRYL 132
           DDYAEPLRRYL
Sbjct: 121 DDYAEPLRRYL 131

[Close]

BLAST of Chy1G016620 vs. ExPASy TrEMBL
Match: A0A1S3BT19 (nuclear transcription factor Y subunit B-1 OS=Cucumis melo OX=3656 GN=LOC103492848 PE=3 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 7.0e-67
Identity = 130/131 (99.24%), Postives = 131/131 (100.00%), Query Frame = 0


Query: 1   MDENTGMPERSIEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60
           MDENTGMPERS+EFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI
Sbjct: 1   MDENTGMPERSVEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLRRYL 132
           DDYAEPLRRYL
Sbjct: 121 DDYAEPLRRYL 131

[Close]

BLAST of Chy1G016620 vs. ExPASy TrEMBL
Match: A0A5A7VLD2 (Nuclear transcription factor Y subunit B-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G002260 PE=3 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 3.6e-63
Identity = 124/125 (99.20%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 7   MPERSIEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILP 66
           MPERS+EFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILP
Sbjct: 1   MPERSVEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILP 60

Query: 67  PNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEP 126
           PNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEP
Sbjct: 61  PNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEP 120

Query: 127 LRRYL 132
           LRRYL
Sbjct: 121 LRRYL 125

[Close]

BLAST of Chy1G016620 vs. ExPASy TrEMBL
Match: A0A6J1JM11 (nuclear transcription factor Y subunit B-1 OS=Cucurbita maxima OX=3661 GN=LOC111488106 PE=3 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 8.8e-62
Identity = 121/131 (92.37%), Postives = 125/131 (95.42%), Query Frame = 0


Query: 1   MDENTGMPERSIEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60
           MD+NT MPER +EFKYDFT GG  GVGGSTGGSSEEAG+G+GG VKEQDRLLPIANVGRI
Sbjct: 1   MDDNTPMPERLVEFKYDFTTGGGGGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLRRYL 132
           DDYAEPLRRYL
Sbjct: 121 DDYAEPLRRYL 131

[Close]

BLAST of Chy1G016620 vs. ExPASy TrEMBL
Match: A0A6J1GM85 (nuclear transcription factor Y subunit B-1-like OS=Cucurbita moschata OX=3662 GN=LOC111455784 PE=3 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 8.8e-62
Identity = 123/132 (93.18%), Postives = 127/132 (96.21%), Query Frame = 0


Query: 1   MDENTGMPERSIEFKYDF-TGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGR 60
           MD+NT MPER +EFKYDF TGGGS GVGGSTGGSSEEAG+G+GG VKEQDRLLPIANVGR
Sbjct: 1   MDDNTPMPERLVEFKYDFTTGGGSGGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGR 60

Query: 61  IMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLG 120
           IMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLG
Sbjct: 61  IMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLG 120

Query: 121 FDDYAEPLRRYL 132
           FDDYAEPLRRYL
Sbjct: 121 FDDYAEPLRRYL 132

[Close]

BLAST of Chy1G016620 vs. NCBI nr
Match: XP_011659350.1 (nuclear transcription factor Y subunit B-5 [Cucumis sativus])

HSP 1 Score: 260 bits (665), Expect = 7.52e-87
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0


Query: 1   MDENTGMPERSIEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60
           MDENTGMPERSIEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI
Sbjct: 1   MDENTGMPERSIEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLRRYL 131
           DDYAEPLRRYL
Sbjct: 121 DDYAEPLRRYL 131

[Close]

BLAST of Chy1G016620 vs. NCBI nr
Match: XP_008451614.1 (PREDICTED: nuclear transcription factor Y subunit B-1 [Cucumis melo])

HSP 1 Score: 260 bits (664), Expect = 1.11e-86
Identity = 130/131 (99.24%), Postives = 131/131 (100.00%), Query Frame = 0


Query: 1   MDENTGMPERSIEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60
           MDENTGMPERS+EFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI
Sbjct: 1   MDENTGMPERSVEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLRRYL 131
           DDYAEPLRRYL
Sbjct: 121 DDYAEPLRRYL 131

[Close]

BLAST of Chy1G016620 vs. NCBI nr
Match: XP_038876756.1 (nuclear transcription factor Y subunit B-1-like [Benincasa hispida])

HSP 1 Score: 256 bits (654), Expect = 3.12e-85
Identity = 128/131 (97.71%), Postives = 129/131 (98.47%), Query Frame = 0


Query: 1   MDENTGMPERSIEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60
           MDENTGMPER +EFKYDFTGGG SGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI
Sbjct: 1   MDENTGMPERLVEFKYDFTGGGGSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLRRYL 131
           DDYAEPLRRYL
Sbjct: 121 DDYAEPLRRYL 131

[Close]

BLAST of Chy1G016620 vs. NCBI nr
Match: KAA0068030.1 (nuclear transcription factor Y subunit B-1 [Cucumis melo var. makuwa])

HSP 1 Score: 247 bits (631), Expect = 1.00e-81
Identity = 124/125 (99.20%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 7   MPERSIEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILP 66
           MPERS+EFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILP
Sbjct: 1   MPERSVEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILP 60

Query: 67  PNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEP 126
           PNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEP
Sbjct: 61  PNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEP 120

Query: 127 LRRYL 131
           LRRYL
Sbjct: 121 LRRYL 125

[Close]

BLAST of Chy1G016620 vs. NCBI nr
Match: XP_023549145.1 (nuclear transcription factor Y subunit B-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 243 bits (620), Expect = 4.75e-80
Identity = 121/131 (92.37%), Postives = 125/131 (95.42%), Query Frame = 0


Query: 1   MDENTGMPERSIEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60
           MD+NT MPER +EFKYDFT GG  GVGGSTGGSSEEAG+G+GG VKEQDRLLPIANVGRI
Sbjct: 1   MDDNTPMPERLVEFKYDFTTGGGGGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLRRYL 131
           DDYAEPLRRYL
Sbjct: 121 DDYAEPLRRYL 131

[Close]

BLAST of Chy1G016620 vs. TAIR 10
Match: AT2G47810.1 (nuclear factor Y, subunit B5 )

HSP 1 Score: 163.3 bits (412), Expect = 1.4e-40
Identity = 77/92 (83.70%), Postives = 84/92 (91.30%), Query Frame = 0


Query: 44  VVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKR 103
           +VKEQDRLLPIANVGRIMK ILP NAK+SKEAKETMQECVSEFISFVTGEASDKCHKEKR
Sbjct: 48  MVKEQDRLLPIANVGRIMKNILPANAKVSKEAKETMQECVSEFISFVTGEASDKCHKEKR 107

Query: 104 KTVNGDDICCALATLGFDDYAEPLRRYLDKLK 136
           KTVNGDDIC A+A LGFDDYA  L++YL + +
Sbjct: 108 KTVNGDDICWAMANLGFDDYAAQLKKYLHRYR 139

[Close]

BLAST of Chy1G016620 vs. TAIR 10
Match: AT2G38880.7 (nuclear factor Y, subunit B1 )

HSP 1 Score: 149.4 bits (376), Expect = 2.2e-36
Identity = 75/113 (66.37%), Postives = 91/113 (80.53%), Query Frame = 0


Query: 34  SEEAGNG--VGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVT 93
           S  AG+G   GG V+EQDR LPIAN+ RIMK+ LPPN KI K+AK+T+QECVSEFISF+T
Sbjct: 6   SSPAGDGGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFISFIT 65

Query: 94  GEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLDKLKWG-NGGNGE 144
            EASDKC KEKRKTVNGDD+  A+ATLGF+DY EPL+ YL + + G N G+G+
Sbjct: 66  SEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYREGDNKGSGK 118

[Close]

BLAST of Chy1G016620 vs. TAIR 10
Match: AT2G38880.2 (nuclear factor Y, subunit B1 )

HSP 1 Score: 147.9 bits (372), Expect = 6.3e-36
Identity = 75/115 (65.22%), Postives = 91/115 (79.13%), Query Frame = 0


Query: 34  SEEAGNG--VGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVT 93
           S  AG+G   GG V+EQDR LPIAN+ RIMK+ LPPN KI K+AK+T+QECVSEFISF+T
Sbjct: 6   SSPAGDGGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFISFIT 65

Query: 94  GEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLDK---LKWGNGGNGE 144
            EASDKC KEKRKTVNGDD+  A+ATLGF+DY EPL+ YL +   L+  N G+G+
Sbjct: 66  SEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGDNKGSGK 120

[Close]

BLAST of Chy1G016620 vs. TAIR 10
Match: AT2G38880.3 (nuclear factor Y, subunit B1 )

HSP 1 Score: 147.9 bits (372), Expect = 6.3e-36
Identity = 75/115 (65.22%), Postives = 91/115 (79.13%), Query Frame = 0


Query: 34  SEEAGNG--VGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVT 93
           S  AG+G   GG V+EQDR LPIAN+ RIMK+ LPPN KI K+AK+T+QECVSEFISF+T
Sbjct: 6   SSPAGDGGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFISFIT 65

Query: 94  GEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLDK---LKWGNGGNGE 144
            EASDKC KEKRKTVNGDD+  A+ATLGF+DY EPL+ YL +   L+  N G+G+
Sbjct: 66  SEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGDNKGSGK 120

[Close]

BLAST of Chy1G016620 vs. TAIR 10
Match: AT2G38880.1 (nuclear factor Y, subunit B1 )

HSP 1 Score: 147.9 bits (372), Expect = 6.3e-36
Identity = 75/115 (65.22%), Postives = 91/115 (79.13%), Query Frame = 0


Query: 34  SEEAGNG--VGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVT 93
           S  AG+G   GG V+EQDR LPIAN+ RIMK+ LPPN KI K+AK+T+QECVSEFISF+T
Sbjct: 6   SSPAGDGGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFISFIT 65

Query: 94  GEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLDK---LKWGNGGNGE 144
            EASDKC KEKRKTVNGDD+  A+ATLGF+DY EPL+ YL +   L+  N G+G+
Sbjct: 66  SEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGDNKGSGK 120

The following BLAST results are available for this feature:

BLAST of Chy1G016620 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82248	2.0e-39	83.70	Nuclear transcription factor Y subunit B-5 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q60EQ4	8.0e-36	63.79	Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica OX=39...	[more]
P25209	4.0e-35	63.72	Nuclear transcription factor Y subunit B OS=Zea mays OX=4577 GN=NFY2 PE=2 SV=1	[more]
Q9SLG0	8.9e-35	65.22	Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q9SIT9	3.4e-34	65.79	Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]

BLAST of Chy1G016620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K954	5.3e-67	100.00	CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G3952...	[more]
A0A1S3BT19	7.0e-67	99.24	nuclear transcription factor Y subunit B-1 OS=Cucumis melo OX=3656 GN=LOC1034928...	[more]
A0A5A7VLD2	3.6e-63	99.20	Nuclear transcription factor Y subunit B-1 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A6J1JM11	8.8e-62	92.37	nuclear transcription factor Y subunit B-1 OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1GM85	8.8e-62	93.18	nuclear transcription factor Y subunit B-1-like OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of Chy1G016620 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011659350.1	7.52e-87	100.00	nuclear transcription factor Y subunit B-5 [Cucumis sativus]	[more]
XP_008451614.1	1.11e-86	99.24	PREDICTED: nuclear transcription factor Y subunit B-1 [Cucumis melo]	[more]
XP_038876756.1	3.12e-85	97.71	nuclear transcription factor Y subunit B-1-like [Benincasa hispida]	[more]
KAA0068030.1	1.00e-81	99.20	nuclear transcription factor Y subunit B-1 [Cucumis melo var. makuwa]	[more]
XP_023549145.1	4.75e-80	92.37	nuclear transcription factor Y subunit B-1-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Chy1G016620 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G47810.1	1.4e-40	83.70	nuclear factor Y, subunit B5	[more]
AT2G38880.7	2.2e-36	66.37	nuclear factor Y, subunit B1	[more]
AT2G38880.2	6.3e-36	65.22	nuclear factor Y, subunit B1	[more]
AT2G38880.3	6.3e-36	65.22	nuclear factor Y, subunit B1	[more]
AT2G38880.1	6.3e-36	65.22	nuclear factor Y, subunit B1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00615	CCAATSUBUNTA	coord: 117..135 score: 34.21 coord: 79..97 score: 51.32 coord: 98..116 score: 34.21
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..43
None	No IPR available	PANTHER	PTHR11064:SF106	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-5	coord: 34..136
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 43..140 e-value: 5.7E-41 score: 141.6
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 48..136
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 51..115 e-value: 5.3E-27 score: 93.9
IPR027113	Transcription factor NFYB/HAP3	PANTHER	PTHR11064	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	coord: 34..136
IPR003956	Transcription factor, NFYB/HAP3, conserved site	PROSITE	PS00685	NFYB_HAP3	coord: 82..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy1G016620.1	Chy1G016620.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016602	CCAAT-binding factor complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding
molecular_function	GO:0043565	sequence-specific DNA binding