Chy1G016180 (gene) Cucumber (hystrix) v1

Overview


Name	Chy1G016180
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	39S ribosomal protein L46, mitochondrial-like isoform X2
Location	chrH01: 22110358 .. 22113256 (-)
RNA-Seq Expression	Chy1G016180
Synteny	Chy1G016180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGAGATCGTTAAATTTTGCCGGTCAGCTCGTGAAGAGGCGAGGATTTTCGACGAATTCTGAGAAAATTGTAGCGGCTGTACTGTTCGAGAGGCTGCCAATCGTGATTCCGAAGATTGACCCCGTGGTCTATGCATTTACGGACTTCCAGTACGTTGTTTTTGCTTGTGATTCTTTTTTGACTGAAAGAGTTGCTGTATCTTGACTTTATTTTCATCTGGATAGTGAGTATTTCTTATTTATTTCTTATTTTGATCGTTCAGCTTTGCTCGATTGTCTTCAGGTTGAGGTGGCAACAGCAATATCGACGCAACTATCCTGACGAATTTTTAAATAAAGCTGATGCCAGGTATATTTTCTATCATTTTGTTTGGCTACGTCGTGTATAGATTTTTGGTTTATGCATTGTTTTAACTTGACTTTCTCTTTGAACTCCTTTAATTCTTGTGACATTTTAAAGCATCAAGTTCTAGAGAGTGCTCTTTTAGTCTATTTTTTCATTTTGTCAAACATCATTATTCACAACAATGTGATATTAGTTATCATATTTTAGCTTATTTTATTCTTAAAAGTGCAAGACACTATTTTTGTGGGCTACTCTACTAGGAGGGCACCAGTTGATTCCAAACTTTGAGCAAGAAAATTTTGTGAAAGTAAAGAACACATATGTTAGTTCACTTTAAGTACCAATGTAATTTAATTATCAAAAGGACGACATTGGCATCCCAATTGAGGAGAGTTGGTTTCAGTCTCTAATTAAAATAGATTGCAAATTTCTAATGTGATTTGTTACATTGAGGTAATAACTTTTTCGTTCTCTTGAAAGTTGGAACTAACAACTTTTGGTACCGAAAGCAATTAACGAAAGTTTCCAGTTATTGGTACAGTTAAATTTTATGACTTCCTTGGATTGGAGCCTTCTAAGATGAAGCTTTATGTTGATAAATCTTAGGGCTTTCTTTAGTAGTGAGCTTAGTATAATGTAGCTTTTGGGTGATCAATTTACATTTTCTTTGAATTATTTGCATGGATTATCTGGGTGGAGGATGACCAACTCTGTAACGCGTTTTTCCTTAATTATCTAAATTCATGTTTATTTCAAATGGGTGACTGCGGTACTTGAATTTCGTATATATTACTACCACTATAGCGCAATGTCATATGCCCATAGGCCTTCAAAATATTTATATTTTGAAGGCAATCTTATCTCATGTTCCTATCAATTTTCAGTTAGCTAATTGATGGAGCTTATTGTCCAAACACTGGATAAATGAAAATACATGATTTTTCTTTCTTTTGGCAATTGTATGACTCAAGCTGCTGATAACAGGGGAAAAGGTGACTACCAAATTGATTATGTTCCAGCTCCACGGATTACTGAAGCTGACAAAACAAACGACAGGAAGTATGCAATCTCTTCTTTCTTTCTTCTTCTTTTTTTTTTTTTTCCTTTTCTCTCCTATCTTTAATATAACTTAGAATTGATTGATTGAAGGTTTCTTTATCCATGCAACGTCACTATTGAGTGAAAAGAAACACAATCTATGAGTTTTTGTTCTTGTTCATTCTAAATGATCTTCACTGTTGTGACATTTCTTCCCTGCAATTTTTTGTGGCACCTTGCAGTTCTTTTGTGTTTGTTTGAACATATTTTCTCGTTTCTTATATAAAAAAAAAAGAAGACAAAATAACACTTTTATATCCCAATATTTCACAGTGCATATCAAGCTCATATGCATGCTGCTCTGTTAGTGCTTTCAACTCATTTATTTTAGTGAAGCGCTCTTACATCTTTAAAACCACAGTTCTACTTAGTTTCATGATGACTGATAAAACTTGTTTTAGCCCTGGGGAAATCCCTTTCATTTGATTCATGATAAAATTTCCAGATATCGTTGGATATCTAATAAATGTTAAAATTGTATTGCTTTGTTTGTATATCAGGCTTTTGATATCTTTCCTACTCTACAACTGAAGTTTCTAGATGGTGTCTCTTAAATACAGAGACTCCCTTTTCTTGCGTTTTATTTAGAGTTGAGGCTATCTGATCCAGGTCATTAGTTTGCTATATTCTAAGCTCGAAATTGAGATTTACATTCTGGTTACTGGAATTGTTCTCTCCTTCTAGGTCACTGAAAAGAGCACTTGACAGAAGACTTTATCTTCTTCTCTATGGTCCCTCCATTGGGGCACCTGATGAGAAACCCATCTGGCACTTTCCAGAAAAAGCTTACGAGACCGAGGAGACATTACGTAAAGTAAGAGTTGGCTACTGGTACTCTTCAGTTCTATTTTTCATCAATTTTACCTTTCTAACTTTTAAGTTCTACAGTGTGCAGAGTCTGCCTTAAAGTCCGTCCTTGGAGATCTTTCTCAAACATATTTTGTTGGTAATGCTCCAATGGGTCATATGGTTGTACCACCTACAGAAACTGCACCGGTTCCAACTTTGAAGGTATATGTCTTCTACTAAAAAAATTATATCATATAATAACTTCAAGCATCGGCAATTGAAATTGGTTAAAATATCAATTTGGCCTCTTTACTTTGGATTTTGTTCTTCCCATACTTTCAATAAATCTTAAATTTAATCCTTTAGAGTTATTTTTAAACACTTGAAAGTGTAGGAACTAAAATGGAATATAGAACCCAAATTACATGAATGAAACCGAAGTTTATACTTGAATGCTGAGTATTTAGTACAATGAGGTCATTTATGTGTTTGCTTAAACGAAATCTCTCCTGTTTGCCAGAGATTCTTTTTTAAGTCTCAAGTGGTTGCAGCCGATGAATTTGATATTGGAAAATGTGAAGATTTTGTATGGGTTACAAAGGATGAATTGTTGGAGCATTTTCCTGATCAAGCTGAATTTTTCAAGAAGATGATCATCAGTTGA

mRNA sequence

ATGCAGAGATCGTTAAATTTTGCCGGTCAGCTCGTGAAGAGGCGAGGATTTTCGACGAATTCTGAGAAAATTGTAGCGGCTGTACTGTTCGAGAGGCTGCCAATCGTGATTCCGAAGATTGACCCCGTGGTCTATGCATTTACGGACTTCCAGTTGAGGTGGCAACAGCAATATCGACGCAACTATCCTGACGAATTTTTAAATAAAGCTGATGCCAGGGGAAAAGGTGACTACCAAATTGATTATGTTCCAGCTCCACGGATTACTGAAGCTGACAAAACAAACGACAGGAAGTCACTGAAAAGAGCACTTGACAGAAGACTTTATCTTCTTCTCTATGGTCCCTCCATTGGGGCACCTGATGAGAAACCCATCTGGCACTTTCCAGAAAAAGCTTACGAGACCGAGGAGACATTACGTAAATGTGCAGAGTCTGCCTTAAAGTCCGTCCTTGGAGATCTTTCTCAAACATATTTTGTTGGTAATGCTCCAATGGGTCATATGGTTGTACCACCTACAGAAACTGCACCGGTTCCAACTTTGAAGAGATTCTTTTTTAAGTCTCAAGTGGTTGCAGCCGATGAATTTGATATTGGAAAATGTGAAGATTTTGTATGGGTTACAAAGGATGAATTGTTGGAGCATTTTCCTGATCAAGCTGAATTTTTCAAGAAGATGATCATCAGTTGA

Coding sequence (CDS)

ATGCAGAGATCGTTAAATTTTGCCGGTCAGCTCGTGAAGAGGCGAGGATTTTCGACGAATTCTGAGAAAATTGTAGCGGCTGTACTGTTCGAGAGGCTGCCAATCGTGATTCCGAAGATTGACCCCGTGGTCTATGCATTTACGGACTTCCAGTTGAGGTGGCAACAGCAATATCGACGCAACTATCCTGACGAATTTTTAAATAAAGCTGATGCCAGGGGAAAAGGTGACTACCAAATTGATTATGTTCCAGCTCCACGGATTACTGAAGCTGACAAAACAAACGACAGGAAGTCACTGAAAAGAGCACTTGACAGAAGACTTTATCTTCTTCTCTATGGTCCCTCCATTGGGGCACCTGATGAGAAACCCATCTGGCACTTTCCAGAAAAAGCTTACGAGACCGAGGAGACATTACGTAAATGTGCAGAGTCTGCCTTAAAGTCCGTCCTTGGAGATCTTTCTCAAACATATTTTGTTGGTAATGCTCCAATGGGTCATATGGTTGTACCACCTACAGAAACTGCACCGGTTCCAACTTTGAAGAGATTCTTTTTTAAGTCTCAAGTGGTTGCAGCCGATGAATTTGATATTGGAAAATGTGAAGATTTTGTATGGGTTACAAAGGATGAATTGTTGGAGCATTTTCCTGATCAAGCTGAATTTTTCAAGAAGATGATCATCAGTTGA

Protein sequence

MQRSLNFAGQLVKRRGFSTNSEKIVAAVLFERLPIVIPKIDPVVYAFTDFQLRWQQQYRRNYPDEFLNKADARGKGDYQIDYVPAPRITEADKTNDRKSLKRALDRRLYLLLYGPSIGAPDEKPIWHFPEKAYETEETLRKCAESALKSVLGDLSQTYFVGNAPMGHMVVPPTETAPVPTLKRFFFKSQVVAADEFDIGKCEDFVWVTKDELLEHFPDQAEFFKKMIIS*

Homology

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BLAST of Chy1G016180 vs. ExPASy Swiss-Prot
Match: Q9EQI8 (39S ribosomal protein L46, mitochondrial OS=Mus musculus OX=10090 GN=Mrpl46 PE=1 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 9.5e-15
Identity = 51/136 (37.50%), Postives = 71/136 (52.21%), Query Frame = 0


Query: 80  IDYVPAPRITEADKTNDRKSLKRALDRRLYLLLYGPSIGAPDEKPIWHFPEKAYETEETL 139
           + + P  R TEADK NDR SL R LDR L +LL    +G  D   +W  P+  ++  ETL
Sbjct: 127 LQFRPGARETEADKKNDRTSLHRKLDRNL-VLLVREKLGDQD---VWMLPQVEWQPGETL 186

Query: 140 RKCAESALKSVLGDLSQTYFVGNAPMGH---MVVPPTETAPVPTLKRFFFKSQVVAADEF 199
           R  AE  L ++  +  +  F+GNAP GH         +T     +K FFFK+ ++  D  
Sbjct: 187 RGTAERILATLSENNMEAKFLGNAPCGHYKFKFPKAIQTESDLGVKVFFFKALLLTGDFV 246

Query: 200 DIGKCEDFVWVTKDEL 213
             GK    VW +K+EL
Sbjct: 247 QAGKKSRHVWASKEEL 258

[Close]

BLAST of Chy1G016180 vs. ExPASy Swiss-Prot
Match: Q9H2W6 (39S ribosomal protein L46, mitochondrial OS=Homo sapiens OX=9606 GN=MRPL46 PE=1 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.6e-14
Identity = 51/129 (39.53%), Postives = 67/129 (51.94%), Query Frame = 0


Query: 87  RITEADKTNDRKSLKRALDRRLYLLLYGPSIGAPDEKPIWHFPEKAYETEETLRKCAESA 146
           RITEAD+ NDR SL R LDR L +LL     G  D   +W  P+  ++  ETLR  AE  
Sbjct: 136 RITEADEKNDRTSLNRKLDRNL-VLLVREKFGDQD---VWILPQAEWQPGETLRGTAERT 195

Query: 147 LKSVLGDLSQTYFVGNAPMGHMVVPPTETAPVPT---LKRFFFKSQVVAADEFDIGKCED 206
           L ++  +  +  F+GNAP GH      +     +    K FFFK+ ++  D    G    
Sbjct: 196 LATLSENNMEAKFLGNAPCGHYTFKFPQAMRTESNLGAKVFFFKALLLTGDFSQAGNKGH 255

Query: 207 FVWVTKDEL 213
            VWVTKDEL
Sbjct: 256 HVWVTKDEL 260

[Close]

BLAST of Chy1G016180 vs. ExPASy Swiss-Prot
Match: Q5RBU2 (39S ribosomal protein L46, mitochondrial OS=Pongo abelii OX=9601 GN=MRPL46 PE=2 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.6e-14
Identity = 51/129 (39.53%), Postives = 67/129 (51.94%), Query Frame = 0


Query: 87  RITEADKTNDRKSLKRALDRRLYLLLYGPSIGAPDEKPIWHFPEKAYETEETLRKCAESA 146
           RITEAD+ NDR SL R LDR L +LL     G  D   +W  P+  ++  ETLR  AE  
Sbjct: 136 RITEADEKNDRTSLNRKLDRNL-VLLVREKFGDQD---VWILPQTEWQPGETLRGTAERT 195

Query: 147 LKSVLGDLSQTYFVGNAPMGHMVVPPTETAPVPT---LKRFFFKSQVVAADEFDIGKCED 206
           L ++  +  +  F+GNAP GH      +     +    K FFFK+ ++  D    G    
Sbjct: 196 LATLSENNMEAKFLGNAPCGHYTFKFPQAMRTESNLGAKVFFFKALLLTGDFSQAGNKGH 255

Query: 207 FVWVTKDEL 213
            VWVTKDEL
Sbjct: 256 HVWVTKDEL 260

[Close]

BLAST of Chy1G016180 vs. ExPASy Swiss-Prot
Match: P36528 (54S ribosomal protein L17, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=MRPL17 PE=1 SV=2)

HSP 1 Score: 80.5 bits (197), Expect = 2.8e-14
Identity = 58/166 (34.94%), Postives = 80/166 (48.19%), Query Frame = 0


Query: 66  FLNKADARGKGDYQIDYVPAPRITEADKTNDRKSLKRALDRRLYLLLYGPSIGAPDEKPI 125
           F N    + K D     +P  RITEAD++ND KSL+R L R LYLL+        D+   
Sbjct: 124 FSNNQKEQSKDDVNRPVIPNDRITEADRSNDMKSLERQLSRTLYLLV-------KDKSGT 183

Query: 126 WHFPEKAYETE-ETLRKCAESALKSVLGDLSQTYFVGNAPMGHMVVPPTETAPVPTLKRF 185
           W FP      E + L   AE+ LK + GD   T+ V   P+G +      TA       F
Sbjct: 184 WKFPNFDLSDESKPLHVHAENELKLLSGDQIYTWSVSATPIGVLQDERNRTA------EF 243

Query: 186 FFKSQVVAADEFDI-----GKCEDFVWVTKDELLEHFPDQAEFFKK 226
             KS ++A  +FD+        EDF W+TK E+ E+ P   ++F K
Sbjct: 244 IVKSHILAG-KFDLVASKNDAFEDFAWLTKGEISEYVP--KDYFNK 273

[Close]

BLAST of Chy1G016180 vs. ExPASy Swiss-Prot
Match: Q5RK00 (39S ribosomal protein L46, mitochondrial OS=Rattus norvegicus OX=10116 GN=Mrpl46 PE=2 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.8e-14
Identity = 51/136 (37.50%), Postives = 70/136 (51.47%), Query Frame = 0


Query: 80  IDYVPAPRITEADKTNDRKSLKRALDRRLYLLLYGPSIGAPDEKPIWHFPEKAYETEETL 139
           + + P  R TEADK NDR SL R LDR L +LL    +G  D   +W  P+  ++  ETL
Sbjct: 127 LQFRPGARETEADKKNDRTSLHRKLDRNL-ILLVREKLGDQD---LWMLPQVEWQPGETL 186

Query: 140 RKCAESALKSVLGDLSQTYFVGNAPMGH---MVVPPTETAPVPTLKRFFFKSQVVAADEF 199
           R  AE  L ++  +  +  F+GNAP GH          T     +K FFFK+ ++  D  
Sbjct: 187 RGTAERILATLSENNMEAKFLGNAPCGHYKFKFPKAIRTESDLGVKVFFFKALLLTGDFV 246

Query: 200 DIGKCEDFVWVTKDEL 213
             GK    VW +K+EL
Sbjct: 247 QTGKKGRHVWASKEEL 258

[Close]

BLAST of Chy1G016180 vs. ExPASy TrEMBL
Match: A0A0A0KAL5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G391280 PE=4 SV=1)

HSP 1 Score: 463.4 bits (1191), Expect = 5.6e-127
Identity = 223/229 (97.38%), Postives = 226/229 (98.69%), Query Frame = 0


Query: 1   MQRSLNFAGQLVKRRGFSTNSEKIVAAVLFERLPIVIPKIDPVVYAFTDFQLRWQQQYRR 60
           MQRSLNFAGQLVKRRGFSTNSEKIVAAVLFERLP+VIPKIDPV+YAFTDFQ RWQQQYRR
Sbjct: 44  MQRSLNFAGQLVKRRGFSTNSEKIVAAVLFERLPVVIPKIDPVIYAFTDFQFRWQQQYRR 103

Query: 61  NYPDEFLNKADARGKGDYQIDYVPAPRITEADKTNDRKSLKRALDRRLYLLLYGPSIGAP 120
            YPDEFLNKAD RGKGDYQIDYVPAPRITEADKTNDRKSLKRALDRRLYLLLYGPSIGAP
Sbjct: 104 KYPDEFLNKADGRGKGDYQIDYVPAPRITEADKTNDRKSLKRALDRRLYLLLYGPSIGAP 163

Query: 121 DEKPIWHFPEKAYETEETLRKCAESALKSVLGDLSQTYFVGNAPMGHMVVPPTETAPVPT 180
           DEKPIWHFPEKAYETEETLRKCAESALKSVLGDLSQTYFVGNAPMGHMVVPPTETAPVPT
Sbjct: 164 DEKPIWHFPEKAYETEETLRKCAESALKSVLGDLSQTYFVGNAPMGHMVVPPTETAPVPT 223

Query: 181 LKRFFFKSQVVAADEFDIGKCEDFVWVTKDELLEHFPDQAEFFKKMIIS 230
           LKRFFFKSQVVAAD+FDIGKCEDFVWVTKDELLEHFPDQAEFFKKMIIS
Sbjct: 224 LKRFFFKSQVVAADKFDIGKCEDFVWVTKDELLEHFPDQAEFFKKMIIS 272

[Close]

BLAST of Chy1G016180 vs. ExPASy TrEMBL
Match: A0A1S4DYN0 (54S ribosomal protein L17, mitochondrial isoform X2 OS=Cucumis melo OX=3656 GN=LOC103492711 PE=4 SV=1)

HSP 1 Score: 446.0 bits (1146), Expect = 9.2e-122
Identity = 216/229 (94.32%), Postives = 221/229 (96.51%), Query Frame = 0


Query: 1   MQRSLNFAGQLVKRRGFSTNSEKIVAAVLFERLPIVIPKIDPVVYAFTDFQLRWQQQYRR 60
           MQRSL+FA QLVKRRGFSTNSEKIVA VLFERLPIVIPKIDPVVYAFT+F+ RWQQQYRR
Sbjct: 1   MQRSLSFASQLVKRRGFSTNSEKIVANVLFERLPIVIPKIDPVVYAFTEFRFRWQQQYRR 60

Query: 61  NYPDEFLNKADARGKGDYQIDYVPAPRITEADKTNDRKSLKRALDRRLYLLLYGPSIGAP 120
            YPDEFL+KADARGKGDYQIDYVPAPRITEADKTNDRKSLKRALDRRLYLLLYGPSIGAP
Sbjct: 61  KYPDEFLDKADARGKGDYQIDYVPAPRITEADKTNDRKSLKRALDRRLYLLLYGPSIGAP 120

Query: 121 DEKPIWHFPEKAYETEETLRKCAESALKSVLGDLSQTYFVGNAPMGHMVVPPTETAPVPT 180
           DEKPIWHFPEK YETEETLRKCAESALKSVLGDLS TYFVGNAPMGHMVVPPTETA VPT
Sbjct: 121 DEKPIWHFPEKVYETEETLRKCAESALKSVLGDLSHTYFVGNAPMGHMVVPPTETAQVPT 180

Query: 181 LKRFFFKSQVVAADEFDIGKCEDFVWVTKDELLEHFPDQAEFFKKMIIS 230
           LKRFFFKSQVVA D+FDIGKCEDFVWVTKDELLEHFPDQAEFFKKMIIS
Sbjct: 181 LKRFFFKSQVVATDKFDIGKCEDFVWVTKDELLEHFPDQAEFFKKMIIS 229

[Close]

BLAST of Chy1G016180 vs. ExPASy TrEMBL
Match: A0A5D3D407 (54S ribosomal protein L17 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G002200 PE=4 SV=1)

HSP 1 Score: 446.0 bits (1146), Expect = 9.2e-122
Identity = 216/229 (94.32%), Postives = 221/229 (96.51%), Query Frame = 0


Query: 1   MQRSLNFAGQLVKRRGFSTNSEKIVAAVLFERLPIVIPKIDPVVYAFTDFQLRWQQQYRR 60
           MQRSL+FA QLVKRRGFSTNSEKIVA VLFERLPIVIPKIDPVVYAFT+F+ RWQQQYRR
Sbjct: 1   MQRSLSFASQLVKRRGFSTNSEKIVANVLFERLPIVIPKIDPVVYAFTEFRFRWQQQYRR 60

Query: 61  NYPDEFLNKADARGKGDYQIDYVPAPRITEADKTNDRKSLKRALDRRLYLLLYGPSIGAP 120
            YPDEFL+KADARGKGDYQIDYVPAPRITEADKTNDRKSLKRALDRRLYLLLYGPSIGAP
Sbjct: 61  KYPDEFLDKADARGKGDYQIDYVPAPRITEADKTNDRKSLKRALDRRLYLLLYGPSIGAP 120

Query: 121 DEKPIWHFPEKAYETEETLRKCAESALKSVLGDLSQTYFVGNAPMGHMVVPPTETAPVPT 180
           DEKPIWHFPEK YETEETLRKCAESALKSVLGDLS TYFVGNAPMGHMVVPPTETA VPT
Sbjct: 121 DEKPIWHFPEKVYETEETLRKCAESALKSVLGDLSHTYFVGNAPMGHMVVPPTETAQVPT 180

Query: 181 LKRFFFKSQVVAADEFDIGKCEDFVWVTKDELLEHFPDQAEFFKKMIIS 230
           LKRFFFKSQVVA D+FDIGKCEDFVWVTKDELLEHFPDQAEFFKKMIIS
Sbjct: 181 LKRFFFKSQVVATDKFDIGKCEDFVWVTKDELLEHFPDQAEFFKKMIIS 229

[Close]

BLAST of Chy1G016180 vs. ExPASy TrEMBL
Match: A0A1S3BS77 (54S ribosomal protein L17, mitochondrial isoform X1 OS=Cucumis melo OX=3656 GN=LOC103492711 PE=4 SV=1)

HSP 1 Score: 446.0 bits (1146), Expect = 9.2e-122
Identity = 216/229 (94.32%), Postives = 221/229 (96.51%), Query Frame = 0


Query: 1   MQRSLNFAGQLVKRRGFSTNSEKIVAAVLFERLPIVIPKIDPVVYAFTDFQLRWQQQYRR 60
           MQRSL+FA QLVKRRGFSTNSEKIVA VLFERLPIVIPKIDPVVYAFT+F+ RWQQQYRR
Sbjct: 7   MQRSLSFASQLVKRRGFSTNSEKIVANVLFERLPIVIPKIDPVVYAFTEFRFRWQQQYRR 66

Query: 61  NYPDEFLNKADARGKGDYQIDYVPAPRITEADKTNDRKSLKRALDRRLYLLLYGPSIGAP 120
            YPDEFL+KADARGKGDYQIDYVPAPRITEADKTNDRKSLKRALDRRLYLLLYGPSIGAP
Sbjct: 67  KYPDEFLDKADARGKGDYQIDYVPAPRITEADKTNDRKSLKRALDRRLYLLLYGPSIGAP 126

Query: 121 DEKPIWHFPEKAYETEETLRKCAESALKSVLGDLSQTYFVGNAPMGHMVVPPTETAPVPT 180
           DEKPIWHFPEK YETEETLRKCAESALKSVLGDLS TYFVGNAPMGHMVVPPTETA VPT
Sbjct: 127 DEKPIWHFPEKVYETEETLRKCAESALKSVLGDLSHTYFVGNAPMGHMVVPPTETAQVPT 186

Query: 181 LKRFFFKSQVVAADEFDIGKCEDFVWVTKDELLEHFPDQAEFFKKMIIS 230
           LKRFFFKSQVVA D+FDIGKCEDFVWVTKDELLEHFPDQAEFFKKMIIS
Sbjct: 187 LKRFFFKSQVVATDKFDIGKCEDFVWVTKDELLEHFPDQAEFFKKMIIS 235

[Close]

BLAST of Chy1G016180 vs. ExPASy TrEMBL
Match: A0A5A7UTU6 (54S ribosomal protein L17 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold497G00280 PE=4 SV=1)

HSP 1 Score: 432.2 bits (1110), Expect = 1.4e-117
Identity = 216/254 (85.04%), Postives = 221/254 (87.01%), Query Frame = 0


Query: 1   MQRSLNFAGQLVKRRGFSTNSEKIVAAVLFERLPIVIPKIDPVVYAFTDFQLRWQQQYRR 60
           MQRSL+FA QLVKRRGFSTNSEKIVA VLFERLPIVIPKIDPVVYAFT+F+ RWQQQYRR
Sbjct: 1   MQRSLSFASQLVKRRGFSTNSEKIVANVLFERLPIVIPKIDPVVYAFTEFRFRWQQQYRR 60

Query: 61  NYPDEFLNKADARGKGDYQIDYVPAPRITEADKTNDRKSLKRALDRRLYLLLYGPSIGAP 120
            YPDEFL+KADARGKGDYQIDYVPAPRITEADKTNDRKSLKRALDRRLYLLLYGPSIGAP
Sbjct: 61  KYPDEFLDKADARGKGDYQIDYVPAPRITEADKTNDRKSLKRALDRRLYLLLYGPSIGAP 120

Query: 121 DEKPIWHFPEKAYETEETLRK-------------------------CAESALKSVLGDLS 180
           DEKPIWHFPEK YETEETLRK                         CAESALKSVLGDLS
Sbjct: 121 DEKPIWHFPEKVYETEETLRKVRVGYRYSSVLFFIIFYPSDFQVLQCAESALKSVLGDLS 180

Query: 181 QTYFVGNAPMGHMVVPPTETAPVPTLKRFFFKSQVVAADEFDIGKCEDFVWVTKDELLEH 230
            TYFVGNAPMGHMVVPPTETA VPTLKRFFFKSQVVA D+FDIGKCEDFVWVTKDELLEH
Sbjct: 181 HTYFVGNAPMGHMVVPPTETAQVPTLKRFFFKSQVVATDKFDIGKCEDFVWVTKDELLEH 240

[Close]

BLAST of Chy1G016180 vs. NCBI nr
Match: XP_011659323.1 (39S ribosomal protein L46, mitochondrial isoform X3 [Cucumis sativus])

HSP 1 Score: 462 bits (1189), Expect = 4.39e-164
Identity = 223/229 (97.38%), Postives = 226/229 (98.69%), Query Frame = 0


Query: 1   MQRSLNFAGQLVKRRGFSTNSEKIVAAVLFERLPIVIPKIDPVVYAFTDFQLRWQQQYRR 60
           MQRSLNFAGQLVKRRGFSTNSEKIVAAVLFERLP+VIPKIDPV+YAFTDFQ RWQQQYRR
Sbjct: 7   MQRSLNFAGQLVKRRGFSTNSEKIVAAVLFERLPVVIPKIDPVIYAFTDFQFRWQQQYRR 66

Query: 61  NYPDEFLNKADARGKGDYQIDYVPAPRITEADKTNDRKSLKRALDRRLYLLLYGPSIGAP 120
            YPDEFLNKAD RGKGDYQIDYVPAPRITEADKTNDRKSLKRALDRRLYLLLYGPSIGAP
Sbjct: 67  KYPDEFLNKADGRGKGDYQIDYVPAPRITEADKTNDRKSLKRALDRRLYLLLYGPSIGAP 126

Query: 121 DEKPIWHFPEKAYETEETLRKCAESALKSVLGDLSQTYFVGNAPMGHMVVPPTETAPVPT 180
           DEKPIWHFPEKAYETEETLRKCAESALKSVLGDLSQTYFVGNAPMGHMVVPPTETAPVPT
Sbjct: 127 DEKPIWHFPEKAYETEETLRKCAESALKSVLGDLSQTYFVGNAPMGHMVVPPTETAPVPT 186

Query: 181 LKRFFFKSQVVAADEFDIGKCEDFVWVTKDELLEHFPDQAEFFKKMIIS 229
           LKRFFFKSQVVAAD+FDIGKCEDFVWVTKDELLEHFPDQAEFFKKMIIS
Sbjct: 187 LKRFFFKSQVVAADKFDIGKCEDFVWVTKDELLEHFPDQAEFFKKMIIS 235

[Close]

BLAST of Chy1G016180 vs. NCBI nr
Match: XP_011659322.1 (39S ribosomal protein L46, mitochondrial isoform X2 [Cucumis sativus])

HSP 1 Score: 462 bits (1189), Expect = 6.31e-164
Identity = 223/229 (97.38%), Postives = 226/229 (98.69%), Query Frame = 0


Query: 1   MQRSLNFAGQLVKRRGFSTNSEKIVAAVLFERLPIVIPKIDPVVYAFTDFQLRWQQQYRR 60
           MQRSLNFAGQLVKRRGFSTNSEKIVAAVLFERLP+VIPKIDPV+YAFTDFQ RWQQQYRR
Sbjct: 17  MQRSLNFAGQLVKRRGFSTNSEKIVAAVLFERLPVVIPKIDPVIYAFTDFQFRWQQQYRR 76

Query: 61  NYPDEFLNKADARGKGDYQIDYVPAPRITEADKTNDRKSLKRALDRRLYLLLYGPSIGAP 120
            YPDEFLNKAD RGKGDYQIDYVPAPRITEADKTNDRKSLKRALDRRLYLLLYGPSIGAP
Sbjct: 77  KYPDEFLNKADGRGKGDYQIDYVPAPRITEADKTNDRKSLKRALDRRLYLLLYGPSIGAP 136

Query: 121 DEKPIWHFPEKAYETEETLRKCAESALKSVLGDLSQTYFVGNAPMGHMVVPPTETAPVPT 180
           DEKPIWHFPEKAYETEETLRKCAESALKSVLGDLSQTYFVGNAPMGHMVVPPTETAPVPT
Sbjct: 137 DEKPIWHFPEKAYETEETLRKCAESALKSVLGDLSQTYFVGNAPMGHMVVPPTETAPVPT 196

Query: 181 LKRFFFKSQVVAADEFDIGKCEDFVWVTKDELLEHFPDQAEFFKKMIIS 229
           LKRFFFKSQVVAAD+FDIGKCEDFVWVTKDELLEHFPDQAEFFKKMIIS
Sbjct: 197 LKRFFFKSQVVAADKFDIGKCEDFVWVTKDELLEHFPDQAEFFKKMIIS 245

[Close]

BLAST of Chy1G016180 vs. NCBI nr
Match: XP_004148875.2 (54S ribosomal protein L17, mitochondrial isoform X1 [Cucumis sativus])

HSP 1 Score: 462 bits (1189), Expect = 1.56e-163
Identity = 223/229 (97.38%), Postives = 226/229 (98.69%), Query Frame = 0


Query: 1   MQRSLNFAGQLVKRRGFSTNSEKIVAAVLFERLPIVIPKIDPVVYAFTDFQLRWQQQYRR 60
           MQRSLNFAGQLVKRRGFSTNSEKIVAAVLFERLP+VIPKIDPV+YAFTDFQ RWQQQYRR
Sbjct: 42  MQRSLNFAGQLVKRRGFSTNSEKIVAAVLFERLPVVIPKIDPVIYAFTDFQFRWQQQYRR 101

Query: 61  NYPDEFLNKADARGKGDYQIDYVPAPRITEADKTNDRKSLKRALDRRLYLLLYGPSIGAP 120
            YPDEFLNKAD RGKGDYQIDYVPAPRITEADKTNDRKSLKRALDRRLYLLLYGPSIGAP
Sbjct: 102 KYPDEFLNKADGRGKGDYQIDYVPAPRITEADKTNDRKSLKRALDRRLYLLLYGPSIGAP 161

Query: 121 DEKPIWHFPEKAYETEETLRKCAESALKSVLGDLSQTYFVGNAPMGHMVVPPTETAPVPT 180
           DEKPIWHFPEKAYETEETLRKCAESALKSVLGDLSQTYFVGNAPMGHMVVPPTETAPVPT
Sbjct: 162 DEKPIWHFPEKAYETEETLRKCAESALKSVLGDLSQTYFVGNAPMGHMVVPPTETAPVPT 221

Query: 181 LKRFFFKSQVVAADEFDIGKCEDFVWVTKDELLEHFPDQAEFFKKMIIS 229
           LKRFFFKSQVVAAD+FDIGKCEDFVWVTKDELLEHFPDQAEFFKKMIIS
Sbjct: 222 LKRFFFKSQVVAADKFDIGKCEDFVWVTKDELLEHFPDQAEFFKKMIIS 270

[Close]

BLAST of Chy1G016180 vs. NCBI nr
Match: KGN44851.1 (hypothetical protein Csa_016821 [Cucumis sativus])

HSP 1 Score: 462 bits (1189), Expect = 1.68e-163
Identity = 223/229 (97.38%), Postives = 226/229 (98.69%), Query Frame = 0


Query: 1   MQRSLNFAGQLVKRRGFSTNSEKIVAAVLFERLPIVIPKIDPVVYAFTDFQLRWQQQYRR 60
           MQRSLNFAGQLVKRRGFSTNSEKIVAAVLFERLP+VIPKIDPV+YAFTDFQ RWQQQYRR
Sbjct: 44  MQRSLNFAGQLVKRRGFSTNSEKIVAAVLFERLPVVIPKIDPVIYAFTDFQFRWQQQYRR 103

Query: 61  NYPDEFLNKADARGKGDYQIDYVPAPRITEADKTNDRKSLKRALDRRLYLLLYGPSIGAP 120
            YPDEFLNKAD RGKGDYQIDYVPAPRITEADKTNDRKSLKRALDRRLYLLLYGPSIGAP
Sbjct: 104 KYPDEFLNKADGRGKGDYQIDYVPAPRITEADKTNDRKSLKRALDRRLYLLLYGPSIGAP 163

Query: 121 DEKPIWHFPEKAYETEETLRKCAESALKSVLGDLSQTYFVGNAPMGHMVVPPTETAPVPT 180
           DEKPIWHFPEKAYETEETLRKCAESALKSVLGDLSQTYFVGNAPMGHMVVPPTETAPVPT
Sbjct: 164 DEKPIWHFPEKAYETEETLRKCAESALKSVLGDLSQTYFVGNAPMGHMVVPPTETAPVPT 223

Query: 181 LKRFFFKSQVVAADEFDIGKCEDFVWVTKDELLEHFPDQAEFFKKMIIS 229
           LKRFFFKSQVVAAD+FDIGKCEDFVWVTKDELLEHFPDQAEFFKKMIIS
Sbjct: 224 LKRFFFKSQVVAADKFDIGKCEDFVWVTKDELLEHFPDQAEFFKKMIIS 272

[Close]

BLAST of Chy1G016180 vs. NCBI nr
Match: XP_008451409.1 (PREDICTED: 54S ribosomal protein L17, mitochondrial isoform X2 [Cucumis melo] >XP_008451410.1 PREDICTED: 54S ribosomal protein L17, mitochondrial isoform X2 [Cucumis melo] >XP_016901078.1 PREDICTED: 54S ribosomal protein L17, mitochondrial isoform X2 [Cucumis melo] >TYK18277.1 54S ribosomal protein L17 [Cucumis melo var. makuwa])

HSP 1 Score: 445 bits (1144), Expect = 2.56e-157
Identity = 216/229 (94.32%), Postives = 221/229 (96.51%), Query Frame = 0


Query: 1   MQRSLNFAGQLVKRRGFSTNSEKIVAAVLFERLPIVIPKIDPVVYAFTDFQLRWQQQYRR 60
           MQRSL+FA QLVKRRGFSTNSEKIVA VLFERLPIVIPKIDPVVYAFT+F+ RWQQQYRR
Sbjct: 1   MQRSLSFASQLVKRRGFSTNSEKIVANVLFERLPIVIPKIDPVVYAFTEFRFRWQQQYRR 60

Query: 61  NYPDEFLNKADARGKGDYQIDYVPAPRITEADKTNDRKSLKRALDRRLYLLLYGPSIGAP 120
            YPDEFL+KADARGKGDYQIDYVPAPRITEADKTNDRKSLKRALDRRLYLLLYGPSIGAP
Sbjct: 61  KYPDEFLDKADARGKGDYQIDYVPAPRITEADKTNDRKSLKRALDRRLYLLLYGPSIGAP 120

Query: 121 DEKPIWHFPEKAYETEETLRKCAESALKSVLGDLSQTYFVGNAPMGHMVVPPTETAPVPT 180
           DEKPIWHFPEK YETEETLRKCAESALKSVLGDLS TYFVGNAPMGHMVVPPTETA VPT
Sbjct: 121 DEKPIWHFPEKVYETEETLRKCAESALKSVLGDLSHTYFVGNAPMGHMVVPPTETAQVPT 180

Query: 181 LKRFFFKSQVVAADEFDIGKCEDFVWVTKDELLEHFPDQAEFFKKMIIS 229
           LKRFFFKSQVVA D+FDIGKCEDFVWVTKDELLEHFPDQAEFFKKMIIS
Sbjct: 181 LKRFFFKSQVVATDKFDIGKCEDFVWVTKDELLEHFPDQAEFFKKMIIS 229

[Close]

BLAST of Chy1G016180 vs. TAIR 10
Match: AT1G14620.1 (decoy )

HSP 1 Score: 331.3 bits (848), Expect = 6.4e-91
Identity = 156/220 (70.91%), Postives = 182/220 (82.73%), Query Frame = 0


Query: 11  LVKRRGFSTNSEKIVAAVLFERLPIVIPKIDPVVYAFTDFQLRWQQQYRRNYPDEFLNKA 70
           L  RRGF T+S+KIVA+VLFERL +VIPK DP VYAF +F+  WQQQ+RR YPDEFL+ A
Sbjct: 14  LESRRGFCTSSDKIVASVLFERLRVVIPKPDPAVYAFQEFKFNWQQQFRRRYPDEFLDIA 73

Query: 71  DARGKGDYQIDYVPAPRITEADKTNDRKSLKRALDRRLYLLLYGPSIGAPDEKPIWHFPE 130
             R KG+YQ+DYVPAPRITEADK NDRKSL RALD++LYLL++G   GA  +KP+WHFPE
Sbjct: 74  KNRAKGEYQMDYVPAPRITEADKNNDRKSLYRALDKKLYLLIFGKPFGATSDKPVWHFPE 133

Query: 131 KAYETEETLRKCAESALKSVLGDLSQTYFVGNAPMGHMVVPPTETAP-VPTLKRFFFKSQ 190
           K Y++E TLRKCAESALKSV+GDL+ TYFVGNAPM HM + PTE  P +P+ KRFFFK  
Sbjct: 134 KVYDSEPTLRKCAESALKSVVGDLTHTYFVGNAPMAHMAIQPTEEMPDLPSYKRFFFKCS 193

Query: 191 VVAADEFDIGKCEDFVWVTKDELLEHFPDQAEFFKKMIIS 230
           VVAA ++DI  CEDFVWVTKDELLE FP+QAEFF KMIIS
Sbjct: 194 VVAASKYDISNCEDFVWVTKDELLEFFPEQAEFFNKMIIS 233

[Close]

BLAST of Chy1G016180 vs. TAIR 10
Match: AT1G14620.2 (decoy )

HSP 1 Score: 253.4 bits (646), Expect = 1.7e-67
Identity = 119/173 (68.79%), Postives = 142/173 (82.08%), Query Frame = 0


Query: 11  LVKRRGFSTNSEKIVAAVLFERLPIVIPKIDPVVYAFTDFQLRWQQQYRRNYPDEFLNKA 70
           L  RRGF T+S+KIVA+VLFERL +VIPK DP VYAF +F+  WQQQ+RR YPDEFL+ A
Sbjct: 14  LESRRGFCTSSDKIVASVLFERLRVVIPKPDPAVYAFQEFKFNWQQQFRRRYPDEFLDIA 73

Query: 71  DARGKGDYQIDYVPAPRITEADKTNDRKSLKRALDRRLYLLLYGPSIGAPDEKPIWHFPE 130
             R KG+YQ+DYVPAPRITEADK NDRKSL RALD++LYLL++G   GA  +KP+WHFPE
Sbjct: 74  KNRAKGEYQMDYVPAPRITEADKNNDRKSLYRALDKKLYLLIFGKPFGATSDKPVWHFPE 133

Query: 131 KAYETEETLRKCAESALKSVLGDLSQTYFVGNAPMGHMVVPPTETAP-VPTLK 183
           K Y++E TLRKCAESALKSV+GDL+ TYFVGNAPM HM + PTE  P +P+ K
Sbjct: 134 KVYDSEPTLRKCAESALKSVVGDLTHTYFVGNAPMAHMAIQPTEEMPDLPSYK 186

The following BLAST results are available for this feature:

BLAST of Chy1G016180 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9EQI8	9.5e-15	37.50	39S ribosomal protein L46, mitochondrial OS=Mus musculus OX=10090 GN=Mrpl46 PE=1...	[more]
Q9H2W6	1.6e-14	39.53	39S ribosomal protein L46, mitochondrial OS=Homo sapiens OX=9606 GN=MRPL46 PE=1 ...	[more]
Q5RBU2	1.6e-14	39.53	39S ribosomal protein L46, mitochondrial OS=Pongo abelii OX=9601 GN=MRPL46 PE=2 ...	[more]
P36528	2.8e-14	34.94	54S ribosomal protein L17, mitochondrial OS=Saccharomyces cerevisiae (strain ATC...	[more]
Q5RK00	2.8e-14	37.50	39S ribosomal protein L46, mitochondrial OS=Rattus norvegicus OX=10116 GN=Mrpl46...	[more]

BLAST of Chy1G016180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAL5	5.6e-127	97.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G391280 PE=4 SV=1	[more]
A0A1S4DYN0	9.2e-122	94.32	54S ribosomal protein L17, mitochondrial isoform X2 OS=Cucumis melo OX=3656 GN=L...	[more]
A0A5D3D407	9.2e-122	94.32	54S ribosomal protein L17 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3BS77	9.2e-122	94.32	54S ribosomal protein L17, mitochondrial isoform X1 OS=Cucumis melo OX=3656 GN=L...	[more]
A0A5A7UTU6	1.4e-117	85.04	54S ribosomal protein L17 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo...	[more]

BLAST of Chy1G016180 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011659323.1	4.39e-164	97.38	39S ribosomal protein L46, mitochondrial isoform X3 [Cucumis sativus]	[more]
XP_011659322.1	6.31e-164	97.38	39S ribosomal protein L46, mitochondrial isoform X2 [Cucumis sativus]	[more]
XP_004148875.2	1.56e-163	97.38	54S ribosomal protein L17, mitochondrial isoform X1 [Cucumis sativus]	[more]
KGN44851.1	1.68e-163	97.38	hypothetical protein Csa_016821 [Cucumis sativus]	[more]
XP_008451409.1	2.56e-157	94.32	PREDICTED: 54S ribosomal protein L17, mitochondrial isoform X2 [Cucumis melo] >X...	[more]

BLAST of Chy1G016180 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G14620.1	6.4e-91	70.91	decoy	[more]
AT1G14620.2	1.7e-67	68.79	decoy	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.90.79.10	Nucleoside Triphosphate Pyrophosphohydrolase	coord: 96..229 e-value: 4.5E-30 score: 106.1
None	No IPR available	PANTHER	PTHR13124:SF14	SUBFAMILY NOT NAMED	coord: 1..229
IPR040008	39S ribosomal protein L46, mitochondrial	PANTHER	PTHR13124	39S RIBOSOMAL PROTEIN L46, MITOCHONDRIAL PRECURSOR-RELATED	coord: 1..229

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy1G016180.1	Chy1G016180.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005762	mitochondrial large ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome