Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCCCATCTCCTCTCTTCTTCAACTTCTATCCTCACCATTTTGTTCATAACCAAGGCAATCACATTGAGGATATTTCCTCTTATTTTCTCTTTGAGGCCACTGGGGACTCCGAGGGTGCTGACTCCTCGGTCGACCTTCAGAGCTCGTCTCCCGCCTCCACGGAGTTCAACGACGCGGAATCATGCACCGATGACACTGATCGTATTATGCTATGTAATAATGAAAATGAAGATGATGAAGATGAAGAAGGGATGGGTGTTGAGAATGATGATGATGATGATGGGGGTGAAGAAGAAGAAGTAGTTGAAAGCAAGGCCATTGGGTTTTCAATAAAGTCAAATGCTTCTATTGATTCAACTAAGGATGAGTTCAAAATGTTGAATGAAGTTGATAAAAACAGGTTGTTTTGGGAGACTTGTTTGGCTTCATAG
mRNA sequence
ATGCTCCCATCTCCTCTCTTCTTCAACTTCTATCCTCACCATTTTGTTCATAACCAAGGCAATCACATTGAGGATATTTCCTCTTATTTTCTCTTTGAGGCCACTGGGGACTCCGAGGGTGCTGACTCCTCGGTCGACCTTCAGAGCTCGTCTCCCGCCTCCACGGAGTTCAACGACGCGGAATCATGCACCGATGACACTGATCGTATTATGCTATGTAATAATGAAAATGAAGATGATGAAGATGAAGAAGGGATGGGTGTTGAGAATGATGATGATGATGATGGGGGTGAAGAAGAAGAAGTAGTTGAAAGCAAGGCCATTGGGTTTTCAATAAAGTCAAATGCTTCTATTGATTCAACTAAGGATGAGTTCAAAATGTTGAATGAAGTTGATAAAAACAGGTTGTTTTGGGAGACTTGTTTGGCTTCATAG
Coding sequence (CDS)
ATGCTCCCATCTCCTCTCTTCTTCAACTTCTATCCTCACCATTTTGTTCATAACCAAGGCAATCACATTGAGGATATTTCCTCTTATTTTCTCTTTGAGGCCACTGGGGACTCCGAGGGTGCTGACTCCTCGGTCGACCTTCAGAGCTCGTCTCCCGCCTCCACGGAGTTCAACGACGCGGAATCATGCACCGATGACACTGATCGTATTATGCTATGTAATAATGAAAATGAAGATGATGAAGATGAAGAAGGGATGGGTGTTGAGAATGATGATGATGATGATGGGGGTGAAGAAGAAGAAGTAGTTGAAAGCAAGGCCATTGGGTTTTCAATAAAGTCAAATGCTTCTATTGATTCAACTAAGGATGAGTTCAAAATGTTGAATGAAGTTGATAAAAACAGGTTGTTTTGGGAGACTTGTTTGGCTTCATAG
Protein sequence
MLPSPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSEGADSSVDLQSSSPASTEFNDAESCTDDTDRIMLCNNENEDDEDEEGMGVENDDDDDGGEEEEVVESKAIGFSIKSNASIDSTKDEFKMLNEVDKNRLFWETCLAS*
Homology
BLAST of Chy1G016070 vs. ExPASy TrEMBL
Match:
A0A0A0K519 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G390190 PE=4 SV=1)
HSP 1 Score: 236.1 bits (601), Expect = 9.1e-59
Identity = 131/146 (89.73%), Postives = 132/146 (90.41%), Query Frame = 0
Query: 1 MLPSPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSEGADSSVDLQSSSPASTEFNDA 60
ML SPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSE VDLQSSSP STEFNDA
Sbjct: 1 MLSSPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSE-----VDLQSSSPVSTEFNDA 60
Query: 61 ESCTDDTDRIMLCNNENEDDEDEEGMGVENDDD--DDGGEEEEVVESKAIGFSIKSNASI 120
ESCTDDTDRIMLCN NEDDEDEE MGVENDDD D+ EEEEVVESKAIGFSIKSNASI
Sbjct: 61 ESCTDDTDRIMLCN--NEDDEDEEEMGVENDDDDGDEEEEEEEVVESKAIGFSIKSNASI 120
Query: 121 DSTKDEFKMLNEVDKNRLFWETCLAS 145
DSTKDEFKMLNEVDKNRLFWETCLAS
Sbjct: 121 DSTKDEFKMLNEVDKNRLFWETCLAS 139
BLAST of Chy1G016070 vs. ExPASy TrEMBL
Match:
A0A1S3BRI2 (glutamic acid-rich protein OS=Cucumis melo OX=3656 GN=LOC103492721 PE=4 SV=1)
HSP 1 Score: 219.9 bits (559), Expect = 6.8e-54
Identity = 127/148 (85.81%), Postives = 133/148 (89.86%), Query Frame = 0
Query: 4 SPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSEGADSSVDLQSSSPAS-TEFNDAES 63
SPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSE ADSSVDL+SSS AS TEFNDAES
Sbjct: 5 SPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSE-ADSSVDLESSSSASTTEFNDAES 64
Query: 64 CTDDTDRIMLCNNENEDDEDEEGMG---VENDD---DDDGGEEEEVVESKAIGFSIKSNA 123
CTDDT MLCNNENEDD+D++G G VENDD DD+ EEEEVVESKAIGFSIKSNA
Sbjct: 65 CTDDTP-TMLCNNENEDDDDDDGDGEEMVENDDDDHDDEDEEEEEVVESKAIGFSIKSNA 124
Query: 124 SIDSTKDEFKMLNEVDKNRLFWETCLAS 145
SIDSTKD+FKMLNEVDKNRLFWETCLAS
Sbjct: 125 SIDSTKDDFKMLNEVDKNRLFWETCLAS 150
BLAST of Chy1G016070 vs. ExPASy TrEMBL
Match:
A0A5A7UVG0 (Glutamic acid-rich protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold497G00160 PE=4 SV=1)
HSP 1 Score: 217.6 bits (553), Expect = 3.4e-53
Identity = 128/146 (87.67%), Postives = 132/146 (90.41%), Query Frame = 0
Query: 4 SPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSEGADSSVDLQSSSPAS-TEFNDAES 63
SPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSE ADSSVDL+SSS AS TEFNDAES
Sbjct: 5 SPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSE-ADSSVDLESSSSASTTEFNDAES 64
Query: 64 CTDDTDRIMLCNNENEDDEDEEGMG---VENDDDD-DGGEEEEVVESKAIGFSIKSNASI 123
CTDDT MLCNNENEDD D++G G VENDDDD D EEEEVVESKAIGFSIKSNASI
Sbjct: 65 CTDDTP-TMLCNNENEDD-DDDGDGEEMVENDDDDHDNEEEEEVVESKAIGFSIKSNASI 124
Query: 124 DSTKDEFKMLNEVDKNRLFWETCLAS 145
DSTKD+FKMLNEVDKNRLFWETCLAS
Sbjct: 125 DSTKDDFKMLNEVDKNRLFWETCLAS 147
BLAST of Chy1G016070 vs. ExPASy TrEMBL
Match:
A0A6J1JVN0 (uncharacterized protein LOC111488264 OS=Cucurbita maxima OX=3661 GN=LOC111488264 PE=4 SV=1)
HSP 1 Score: 136.3 bits (342), Expect = 9.9e-29
Identity = 90/144 (62.50%), Postives = 100/144 (69.44%), Query Frame = 0
Query: 1 MLPSPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSEGADSSVDLQSSSPASTEFNDA 60
ML +P FFNF+PH F GNHIED SS+ LFEATGDSE ADS V SS S EFNDA
Sbjct: 1 MLSTPFFFNFHPHQF----GNHIEDFSSHLLFEATGDSE-ADSLVG-HGSSTVSVEFNDA 60
Query: 61 ESCTDDTDRIMLCNNENEDDEDEEGMGVENDDDDDGGEEEEVVESKAIGFSIKSNASIDS 120
ESCTDDT +CN + D+ DDDDD E +E VESK IGF +S+ASIDS
Sbjct: 61 ESCTDDTP--AMCNEFKTYENDD-------DDDDDDEENDEEVESKPIGFMTESSASIDS 120
Query: 121 TKDEFKMLNEVDKNRLFWETCLAS 145
+EFKMLNEVDKNRLFWETCLAS
Sbjct: 121 A-EEFKMLNEVDKNRLFWETCLAS 128
BLAST of Chy1G016070 vs. ExPASy TrEMBL
Match:
A0A6J1DA36 (uncharacterized protein LOC111018429 OS=Momordica charantia OX=3673 GN=LOC111018429 PE=4 SV=1)
HSP 1 Score: 125.9 bits (315), Expect = 1.3e-25
Identity = 89/148 (60.14%), Postives = 99/148 (66.89%), Query Frame = 0
Query: 1 MLPSPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSEGADSSVDL--QSSSPASTEFN 60
M +PLFFN + HHF G ++D SSY LFEATGDSE SSVD S++P S E N
Sbjct: 1 MFKTPLFFNLHHHHFAPKDG-CLQDFSSYLLFEATGDSEADASSVDPGGSSAAPGSPECN 60
Query: 61 DAESCTDDT-DRIMLCNNENEDDED-EEGMGVENDDDDDGGEEEEVVESKAIGFSIKSNA 120
DAESCTDDT D +E+ED ED EEG E +DD EVVESKA KS+A
Sbjct: 61 DAESCTDDTPDCDEFDMDEDEDHEDGEEGENYEKNDD-------EVVESKATKGFTKSSA 120
Query: 121 SIDSTKDEFKMLNEVDKNRLFWETCLAS 145
SIDSTK EFKMLNEVDKNRLFWE CLAS
Sbjct: 121 SIDSTK-EFKMLNEVDKNRLFWEACLAS 139
BLAST of Chy1G016070 vs. NCBI nr
Match:
XP_011659319.1 (nuclear polyadenylated RNA-binding protein 3 [Cucumis sativus] >KGN44840.1 hypothetical protein Csa_016864 [Cucumis sativus])
HSP 1 Score: 236 bits (603), Expect = 1.05e-77
Identity = 131/146 (89.73%), Postives = 132/146 (90.41%), Query Frame = 0
Query: 1 MLPSPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSEGADSSVDLQSSSPASTEFNDA 60
ML SPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSE VDLQSSSP STEFNDA
Sbjct: 1 MLSSPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSE-----VDLQSSSPVSTEFNDA 60
Query: 61 ESCTDDTDRIMLCNNENEDDEDEEGMGVENDDDD--DGGEEEEVVESKAIGFSIKSNASI 120
ESCTDDTDRIMLCNNE DDEDEE MGVENDDDD + EEEEVVESKAIGFSIKSNASI
Sbjct: 61 ESCTDDTDRIMLCNNE--DDEDEEEMGVENDDDDGDEEEEEEEVVESKAIGFSIKSNASI 120
Query: 121 DSTKDEFKMLNEVDKNRLFWETCLAS 144
DSTKDEFKMLNEVDKNRLFWETCLAS
Sbjct: 121 DSTKDEFKMLNEVDKNRLFWETCLAS 139
BLAST of Chy1G016070 vs. NCBI nr
Match:
XP_008451422.1 (PREDICTED: glutamic acid-rich protein [Cucumis melo])
HSP 1 Score: 221 bits (563), Expect = 1.88e-71
Identity = 127/148 (85.81%), Postives = 133/148 (89.86%), Query Frame = 0
Query: 4 SPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSEGADSSVDLQSSSPAST-EFNDAES 63
SPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSE ADSSVDL+SSS AST EFNDAES
Sbjct: 5 SPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSE-ADSSVDLESSSSASTTEFNDAES 64
Query: 64 CTDDTDRIMLCNNENEDDEDEEGMG---VENDDDD---DGGEEEEVVESKAIGFSIKSNA 123
CTDDT MLCNNENEDD+D++G G VENDDDD + EEEEVVESKAIGFSIKSNA
Sbjct: 65 CTDDT-PTMLCNNENEDDDDDDGDGEEMVENDDDDHDDEDEEEEEVVESKAIGFSIKSNA 124
Query: 124 SIDSTKDEFKMLNEVDKNRLFWETCLAS 144
SIDSTKD+FKMLNEVDKNRLFWETCLAS
Sbjct: 125 SIDSTKDDFKMLNEVDKNRLFWETCLAS 150
BLAST of Chy1G016070 vs. NCBI nr
Match:
KAA0057545.1 (glutamic acid-rich protein [Cucumis melo var. makuwa])
HSP 1 Score: 219 bits (558), Expect = 9.85e-71
Identity = 128/146 (87.67%), Postives = 132/146 (90.41%), Query Frame = 0
Query: 4 SPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSEGADSSVDLQSSSPAST-EFNDAES 63
SPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSE ADSSVDL+SSS AST EFNDAES
Sbjct: 5 SPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSE-ADSSVDLESSSSASTTEFNDAES 64
Query: 64 CTDDTDRIMLCNNENEDDEDEEGMG---VENDDDD-DGGEEEEVVESKAIGFSIKSNASI 123
CTDDT MLCNNENEDD+D+ G G VENDDDD D EEEEVVESKAIGFSIKSNASI
Sbjct: 65 CTDDT-PTMLCNNENEDDDDD-GDGEEMVENDDDDHDNEEEEEVVESKAIGFSIKSNASI 124
Query: 124 DSTKDEFKMLNEVDKNRLFWETCLAS 144
DSTKD+FKMLNEVDKNRLFWETCLAS
Sbjct: 125 DSTKDDFKMLNEVDKNRLFWETCLAS 147
BLAST of Chy1G016070 vs. NCBI nr
Match:
XP_038896353.1 (uncharacterized protein LOC120084618 [Benincasa hispida])
HSP 1 Score: 172 bits (437), Expect = 1.77e-52
Identity = 111/148 (75.00%), Postives = 114/148 (77.03%), Query Frame = 0
Query: 1 MLPSPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSEGADSSVDLQSSSPASTEFNDA 60
ML +PLFFNFYPH F H QGNHIEDISSYFL EATGDSE DSSVDL S ASTEFNDA
Sbjct: 1 MLSTPLFFNFYPHPFAHKQGNHIEDISSYFLLEATGDSE-IDSSVDL-GGSVASTEFNDA 60
Query: 61 ESCTDDTDRIMLCNNE----NEDDEDEEGMGVENDDDDDGGEEEEVVESKAIGFSIKSNA 120
ESCTDDT I C NE +DEDEE M VEND D EVVESKAIGF+ KSNA
Sbjct: 61 ESCTDDTPTI--CTNEFGKYEYEDEDEEEM-VENDYD-------EVVESKAIGFTTKSNA 120
Query: 121 SIDSTKDEFKMLNEVDKNRLFWETCLAS 144
SIDSTK EFKMLNEVDKNRLFWETCLAS
Sbjct: 121 SIDSTK-EFKMLNEVDKNRLFWETCLAS 135
BLAST of Chy1G016070 vs. NCBI nr
Match:
XP_022991734.1 (uncharacterized protein LOC111488264 [Cucurbita maxima])
HSP 1 Score: 140 bits (354), Expect = 5.92e-40
Identity = 93/146 (63.70%), Postives = 101/146 (69.18%), Query Frame = 0
Query: 1 MLPSPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSEGADSSVDLQSSSPASTEFNDA 60
ML +P FFNF+PH F GNHIED SS+ LFEATGDSE ADS V SS S EFNDA
Sbjct: 1 MLSTPFFFNFHPHQF----GNHIEDFSSHLLFEATGDSE-ADSLVG-HGSSTVSVEFNDA 60
Query: 61 ESCTDDTDRIMLCNNENEDDEDEEGMGVENDDDDDGGEEE--EVVESKAIGFSIKSNASI 120
ESCTDDT +CN E ENDDDDD +EE E VESK IGF +S+ASI
Sbjct: 61 ESCTDDT--PAMCN---------EFKTYENDDDDDDDDEENDEEVESKPIGFMTESSASI 120
Query: 121 DSTKDEFKMLNEVDKNRLFWETCLAS 144
DS +EFKMLNEVDKNRLFWETCLAS
Sbjct: 121 DSA-EEFKMLNEVDKNRLFWETCLAS 128
BLAST of Chy1G016070 vs. TAIR 10
Match:
AT2G47950.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root, flower; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G62990.1); Has 22 Blast hits to 22 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 46.2 bits (108), Expect = 2.6e-05
Identity = 45/135 (33.33%), Postives = 66/135 (48.89%), Query Frame = 0
Query: 18 NQGNHIEDISSYFLFEATGDSEGADSSVD---LQSSSPASTEFNDAESCTDD--TDRIML 77
N N++ D+S + L EA+ DSE SVD E + A SC + R L
Sbjct: 2 NTTNNVFDVSPFLLLEASADSEAGHDSVDDDKCVKDYDLGHESSSASSCETSCVSQRTSL 61
Query: 78 CNNENEDD---EDEEGMGVENDDDDDGGEEEEVVESKAIGFSIKSNASIDSTKDEFKMLN 137
+ +DD +E G E D+D +G EV G S + N ++DS +++
Sbjct: 62 LGFDLQDDTVNHEERDAGDEEDEDGEG----EVNSYIRCGRSQRENLAVDSA----AVVS 121
Query: 138 EVDKNRLFWETCLAS 145
E+D+NR+FWE CLAS
Sbjct: 122 EMDQNRMFWEACLAS 128
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0K519 | 9.1e-59 | 89.73 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G390190 PE=4 SV=1 | [more] |
A0A1S3BRI2 | 6.8e-54 | 85.81 | glutamic acid-rich protein OS=Cucumis melo OX=3656 GN=LOC103492721 PE=4 SV=1 | [more] |
A0A5A7UVG0 | 3.4e-53 | 87.67 | Glutamic acid-rich protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaff... | [more] |
A0A6J1JVN0 | 9.9e-29 | 62.50 | uncharacterized protein LOC111488264 OS=Cucurbita maxima OX=3661 GN=LOC111488264... | [more] |
A0A6J1DA36 | 1.3e-25 | 60.14 | uncharacterized protein LOC111018429 OS=Momordica charantia OX=3673 GN=LOC111018... | [more] |
Match Name | E-value | Identity | Description | |
XP_011659319.1 | 1.05e-77 | 89.73 | nuclear polyadenylated RNA-binding protein 3 [Cucumis sativus] >KGN44840.1 hypot... | [more] |
XP_008451422.1 | 1.88e-71 | 85.81 | PREDICTED: glutamic acid-rich protein [Cucumis melo] | [more] |
KAA0057545.1 | 9.85e-71 | 87.67 | glutamic acid-rich protein [Cucumis melo var. makuwa] | [more] |
XP_038896353.1 | 1.77e-52 | 75.00 | uncharacterized protein LOC120084618 [Benincasa hispida] | [more] |
XP_022991734.1 | 5.92e-40 | 63.70 | uncharacterized protein LOC111488264 [Cucurbita maxima] | [more] |
Match Name | E-value | Identity | Description | |
AT2G47950.1 | 2.6e-05 | 33.33 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... | [more] |