Chy1G016070 (gene) Cucumber (hystrix) v1

Overview
NameChy1G016070
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
Descriptionglutamic acid-rich protein
LocationchrH01: 22014617 .. 22015051 (+)
RNA-Seq ExpressionChy1G016070
SyntenyChy1G016070
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCCCATCTCCTCTCTTCTTCAACTTCTATCCTCACCATTTTGTTCATAACCAAGGCAATCACATTGAGGATATTTCCTCTTATTTTCTCTTTGAGGCCACTGGGGACTCCGAGGGTGCTGACTCCTCGGTCGACCTTCAGAGCTCGTCTCCCGCCTCCACGGAGTTCAACGACGCGGAATCATGCACCGATGACACTGATCGTATTATGCTATGTAATAATGAAAATGAAGATGATGAAGATGAAGAAGGGATGGGTGTTGAGAATGATGATGATGATGATGGGGGTGAAGAAGAAGAAGTAGTTGAAAGCAAGGCCATTGGGTTTTCAATAAAGTCAAATGCTTCTATTGATTCAACTAAGGATGAGTTCAAAATGTTGAATGAAGTTGATAAAAACAGGTTGTTTTGGGAGACTTGTTTGGCTTCATAG

mRNA sequence

ATGCTCCCATCTCCTCTCTTCTTCAACTTCTATCCTCACCATTTTGTTCATAACCAAGGCAATCACATTGAGGATATTTCCTCTTATTTTCTCTTTGAGGCCACTGGGGACTCCGAGGGTGCTGACTCCTCGGTCGACCTTCAGAGCTCGTCTCCCGCCTCCACGGAGTTCAACGACGCGGAATCATGCACCGATGACACTGATCGTATTATGCTATGTAATAATGAAAATGAAGATGATGAAGATGAAGAAGGGATGGGTGTTGAGAATGATGATGATGATGATGGGGGTGAAGAAGAAGAAGTAGTTGAAAGCAAGGCCATTGGGTTTTCAATAAAGTCAAATGCTTCTATTGATTCAACTAAGGATGAGTTCAAAATGTTGAATGAAGTTGATAAAAACAGGTTGTTTTGGGAGACTTGTTTGGCTTCATAG

Coding sequence (CDS)

ATGCTCCCATCTCCTCTCTTCTTCAACTTCTATCCTCACCATTTTGTTCATAACCAAGGCAATCACATTGAGGATATTTCCTCTTATTTTCTCTTTGAGGCCACTGGGGACTCCGAGGGTGCTGACTCCTCGGTCGACCTTCAGAGCTCGTCTCCCGCCTCCACGGAGTTCAACGACGCGGAATCATGCACCGATGACACTGATCGTATTATGCTATGTAATAATGAAAATGAAGATGATGAAGATGAAGAAGGGATGGGTGTTGAGAATGATGATGATGATGATGGGGGTGAAGAAGAAGAAGTAGTTGAAAGCAAGGCCATTGGGTTTTCAATAAAGTCAAATGCTTCTATTGATTCAACTAAGGATGAGTTCAAAATGTTGAATGAAGTTGATAAAAACAGGTTGTTTTGGGAGACTTGTTTGGCTTCATAG

Protein sequence

MLPSPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSEGADSSVDLQSSSPASTEFNDAESCTDDTDRIMLCNNENEDDEDEEGMGVENDDDDDGGEEEEVVESKAIGFSIKSNASIDSTKDEFKMLNEVDKNRLFWETCLAS*
Homology
BLAST of Chy1G016070 vs. ExPASy TrEMBL
Match: A0A0A0K519 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G390190 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 9.1e-59
Identity = 131/146 (89.73%), Postives = 132/146 (90.41%), Query Frame = 0

Query: 1   MLPSPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSEGADSSVDLQSSSPASTEFNDA 60
           ML SPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSE     VDLQSSSP STEFNDA
Sbjct: 1   MLSSPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSE-----VDLQSSSPVSTEFNDA 60

Query: 61  ESCTDDTDRIMLCNNENEDDEDEEGMGVENDDD--DDGGEEEEVVESKAIGFSIKSNASI 120
           ESCTDDTDRIMLCN  NEDDEDEE MGVENDDD  D+  EEEEVVESKAIGFSIKSNASI
Sbjct: 61  ESCTDDTDRIMLCN--NEDDEDEEEMGVENDDDDGDEEEEEEEVVESKAIGFSIKSNASI 120

Query: 121 DSTKDEFKMLNEVDKNRLFWETCLAS 145
           DSTKDEFKMLNEVDKNRLFWETCLAS
Sbjct: 121 DSTKDEFKMLNEVDKNRLFWETCLAS 139

BLAST of Chy1G016070 vs. ExPASy TrEMBL
Match: A0A1S3BRI2 (glutamic acid-rich protein OS=Cucumis melo OX=3656 GN=LOC103492721 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 6.8e-54
Identity = 127/148 (85.81%), Postives = 133/148 (89.86%), Query Frame = 0

Query: 4   SPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSEGADSSVDLQSSSPAS-TEFNDAES 63
           SPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSE ADSSVDL+SSS AS TEFNDAES
Sbjct: 5   SPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSE-ADSSVDLESSSSASTTEFNDAES 64

Query: 64  CTDDTDRIMLCNNENEDDEDEEGMG---VENDD---DDDGGEEEEVVESKAIGFSIKSNA 123
           CTDDT   MLCNNENEDD+D++G G   VENDD   DD+  EEEEVVESKAIGFSIKSNA
Sbjct: 65  CTDDTP-TMLCNNENEDDDDDDGDGEEMVENDDDDHDDEDEEEEEVVESKAIGFSIKSNA 124

Query: 124 SIDSTKDEFKMLNEVDKNRLFWETCLAS 145
           SIDSTKD+FKMLNEVDKNRLFWETCLAS
Sbjct: 125 SIDSTKDDFKMLNEVDKNRLFWETCLAS 150

BLAST of Chy1G016070 vs. ExPASy TrEMBL
Match: A0A5A7UVG0 (Glutamic acid-rich protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold497G00160 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 3.4e-53
Identity = 128/146 (87.67%), Postives = 132/146 (90.41%), Query Frame = 0

Query: 4   SPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSEGADSSVDLQSSSPAS-TEFNDAES 63
           SPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSE ADSSVDL+SSS AS TEFNDAES
Sbjct: 5   SPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSE-ADSSVDLESSSSASTTEFNDAES 64

Query: 64  CTDDTDRIMLCNNENEDDEDEEGMG---VENDDDD-DGGEEEEVVESKAIGFSIKSNASI 123
           CTDDT   MLCNNENEDD D++G G   VENDDDD D  EEEEVVESKAIGFSIKSNASI
Sbjct: 65  CTDDTP-TMLCNNENEDD-DDDGDGEEMVENDDDDHDNEEEEEVVESKAIGFSIKSNASI 124

Query: 124 DSTKDEFKMLNEVDKNRLFWETCLAS 145
           DSTKD+FKMLNEVDKNRLFWETCLAS
Sbjct: 125 DSTKDDFKMLNEVDKNRLFWETCLAS 147

BLAST of Chy1G016070 vs. ExPASy TrEMBL
Match: A0A6J1JVN0 (uncharacterized protein LOC111488264 OS=Cucurbita maxima OX=3661 GN=LOC111488264 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 9.9e-29
Identity = 90/144 (62.50%), Postives = 100/144 (69.44%), Query Frame = 0

Query: 1   MLPSPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSEGADSSVDLQSSSPASTEFNDA 60
           ML +P FFNF+PH F    GNHIED SS+ LFEATGDSE ADS V    SS  S EFNDA
Sbjct: 1   MLSTPFFFNFHPHQF----GNHIEDFSSHLLFEATGDSE-ADSLVG-HGSSTVSVEFNDA 60

Query: 61  ESCTDDTDRIMLCNNENEDDEDEEGMGVENDDDDDGGEEEEVVESKAIGFSIKSNASIDS 120
           ESCTDDT    +CN     + D+       DDDDD  E +E VESK IGF  +S+ASIDS
Sbjct: 61  ESCTDDTP--AMCNEFKTYENDD-------DDDDDDEENDEEVESKPIGFMTESSASIDS 120

Query: 121 TKDEFKMLNEVDKNRLFWETCLAS 145
             +EFKMLNEVDKNRLFWETCLAS
Sbjct: 121 A-EEFKMLNEVDKNRLFWETCLAS 128

BLAST of Chy1G016070 vs. ExPASy TrEMBL
Match: A0A6J1DA36 (uncharacterized protein LOC111018429 OS=Momordica charantia OX=3673 GN=LOC111018429 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.3e-25
Identity = 89/148 (60.14%), Postives = 99/148 (66.89%), Query Frame = 0

Query: 1   MLPSPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSEGADSSVDL--QSSSPASTEFN 60
           M  +PLFFN + HHF    G  ++D SSY LFEATGDSE   SSVD    S++P S E N
Sbjct: 1   MFKTPLFFNLHHHHFAPKDG-CLQDFSSYLLFEATGDSEADASSVDPGGSSAAPGSPECN 60

Query: 61  DAESCTDDT-DRIMLCNNENEDDED-EEGMGVENDDDDDGGEEEEVVESKAIGFSIKSNA 120
           DAESCTDDT D      +E+ED ED EEG   E +DD       EVVESKA     KS+A
Sbjct: 61  DAESCTDDTPDCDEFDMDEDEDHEDGEEGENYEKNDD-------EVVESKATKGFTKSSA 120

Query: 121 SIDSTKDEFKMLNEVDKNRLFWETCLAS 145
           SIDSTK EFKMLNEVDKNRLFWE CLAS
Sbjct: 121 SIDSTK-EFKMLNEVDKNRLFWEACLAS 139

BLAST of Chy1G016070 vs. NCBI nr
Match: XP_011659319.1 (nuclear polyadenylated RNA-binding protein 3 [Cucumis sativus] >KGN44840.1 hypothetical protein Csa_016864 [Cucumis sativus])

HSP 1 Score: 236 bits (603), Expect = 1.05e-77
Identity = 131/146 (89.73%), Postives = 132/146 (90.41%), Query Frame = 0

Query: 1   MLPSPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSEGADSSVDLQSSSPASTEFNDA 60
           ML SPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSE     VDLQSSSP STEFNDA
Sbjct: 1   MLSSPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSE-----VDLQSSSPVSTEFNDA 60

Query: 61  ESCTDDTDRIMLCNNENEDDEDEEGMGVENDDDD--DGGEEEEVVESKAIGFSIKSNASI 120
           ESCTDDTDRIMLCNNE  DDEDEE MGVENDDDD  +  EEEEVVESKAIGFSIKSNASI
Sbjct: 61  ESCTDDTDRIMLCNNE--DDEDEEEMGVENDDDDGDEEEEEEEVVESKAIGFSIKSNASI 120

Query: 121 DSTKDEFKMLNEVDKNRLFWETCLAS 144
           DSTKDEFKMLNEVDKNRLFWETCLAS
Sbjct: 121 DSTKDEFKMLNEVDKNRLFWETCLAS 139

BLAST of Chy1G016070 vs. NCBI nr
Match: XP_008451422.1 (PREDICTED: glutamic acid-rich protein [Cucumis melo])

HSP 1 Score: 221 bits (563), Expect = 1.88e-71
Identity = 127/148 (85.81%), Postives = 133/148 (89.86%), Query Frame = 0

Query: 4   SPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSEGADSSVDLQSSSPAST-EFNDAES 63
           SPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSE ADSSVDL+SSS AST EFNDAES
Sbjct: 5   SPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSE-ADSSVDLESSSSASTTEFNDAES 64

Query: 64  CTDDTDRIMLCNNENEDDEDEEGMG---VENDDDD---DGGEEEEVVESKAIGFSIKSNA 123
           CTDDT   MLCNNENEDD+D++G G   VENDDDD   +  EEEEVVESKAIGFSIKSNA
Sbjct: 65  CTDDT-PTMLCNNENEDDDDDDGDGEEMVENDDDDHDDEDEEEEEVVESKAIGFSIKSNA 124

Query: 124 SIDSTKDEFKMLNEVDKNRLFWETCLAS 144
           SIDSTKD+FKMLNEVDKNRLFWETCLAS
Sbjct: 125 SIDSTKDDFKMLNEVDKNRLFWETCLAS 150

BLAST of Chy1G016070 vs. NCBI nr
Match: KAA0057545.1 (glutamic acid-rich protein [Cucumis melo var. makuwa])

HSP 1 Score: 219 bits (558), Expect = 9.85e-71
Identity = 128/146 (87.67%), Postives = 132/146 (90.41%), Query Frame = 0

Query: 4   SPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSEGADSSVDLQSSSPAST-EFNDAES 63
           SPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSE ADSSVDL+SSS AST EFNDAES
Sbjct: 5   SPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSE-ADSSVDLESSSSASTTEFNDAES 64

Query: 64  CTDDTDRIMLCNNENEDDEDEEGMG---VENDDDD-DGGEEEEVVESKAIGFSIKSNASI 123
           CTDDT   MLCNNENEDD+D+ G G   VENDDDD D  EEEEVVESKAIGFSIKSNASI
Sbjct: 65  CTDDT-PTMLCNNENEDDDDD-GDGEEMVENDDDDHDNEEEEEVVESKAIGFSIKSNASI 124

Query: 124 DSTKDEFKMLNEVDKNRLFWETCLAS 144
           DSTKD+FKMLNEVDKNRLFWETCLAS
Sbjct: 125 DSTKDDFKMLNEVDKNRLFWETCLAS 147

BLAST of Chy1G016070 vs. NCBI nr
Match: XP_038896353.1 (uncharacterized protein LOC120084618 [Benincasa hispida])

HSP 1 Score: 172 bits (437), Expect = 1.77e-52
Identity = 111/148 (75.00%), Postives = 114/148 (77.03%), Query Frame = 0

Query: 1   MLPSPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSEGADSSVDLQSSSPASTEFNDA 60
           ML +PLFFNFYPH F H QGNHIEDISSYFL EATGDSE  DSSVDL   S ASTEFNDA
Sbjct: 1   MLSTPLFFNFYPHPFAHKQGNHIEDISSYFLLEATGDSE-IDSSVDL-GGSVASTEFNDA 60

Query: 61  ESCTDDTDRIMLCNNE----NEDDEDEEGMGVENDDDDDGGEEEEVVESKAIGFSIKSNA 120
           ESCTDDT  I  C NE      +DEDEE M VEND D       EVVESKAIGF+ KSNA
Sbjct: 61  ESCTDDTPTI--CTNEFGKYEYEDEDEEEM-VENDYD-------EVVESKAIGFTTKSNA 120

Query: 121 SIDSTKDEFKMLNEVDKNRLFWETCLAS 144
           SIDSTK EFKMLNEVDKNRLFWETCLAS
Sbjct: 121 SIDSTK-EFKMLNEVDKNRLFWETCLAS 135

BLAST of Chy1G016070 vs. NCBI nr
Match: XP_022991734.1 (uncharacterized protein LOC111488264 [Cucurbita maxima])

HSP 1 Score: 140 bits (354), Expect = 5.92e-40
Identity = 93/146 (63.70%), Postives = 101/146 (69.18%), Query Frame = 0

Query: 1   MLPSPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSEGADSSVDLQSSSPASTEFNDA 60
           ML +P FFNF+PH F    GNHIED SS+ LFEATGDSE ADS V    SS  S EFNDA
Sbjct: 1   MLSTPFFFNFHPHQF----GNHIEDFSSHLLFEATGDSE-ADSLVG-HGSSTVSVEFNDA 60

Query: 61  ESCTDDTDRIMLCNNENEDDEDEEGMGVENDDDDDGGEEE--EVVESKAIGFSIKSNASI 120
           ESCTDDT    +CN         E    ENDDDDD  +EE  E VESK IGF  +S+ASI
Sbjct: 61  ESCTDDT--PAMCN---------EFKTYENDDDDDDDDEENDEEVESKPIGFMTESSASI 120

Query: 121 DSTKDEFKMLNEVDKNRLFWETCLAS 144
           DS  +EFKMLNEVDKNRLFWETCLAS
Sbjct: 121 DSA-EEFKMLNEVDKNRLFWETCLAS 128

BLAST of Chy1G016070 vs. TAIR 10
Match: AT2G47950.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root, flower; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G62990.1); Has 22 Blast hits to 22 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 46.2 bits (108), Expect = 2.6e-05
Identity = 45/135 (33.33%), Postives = 66/135 (48.89%), Query Frame = 0

Query: 18  NQGNHIEDISSYFLFEATGDSEGADSSVD---LQSSSPASTEFNDAESCTDD--TDRIML 77
           N  N++ D+S + L EA+ DSE    SVD            E + A SC     + R  L
Sbjct: 2   NTTNNVFDVSPFLLLEASADSEAGHDSVDDDKCVKDYDLGHESSSASSCETSCVSQRTSL 61

Query: 78  CNNENEDD---EDEEGMGVENDDDDDGGEEEEVVESKAIGFSIKSNASIDSTKDEFKMLN 137
              + +DD    +E   G E D+D +G    EV      G S + N ++DS      +++
Sbjct: 62  LGFDLQDDTVNHEERDAGDEEDEDGEG----EVNSYIRCGRSQRENLAVDSA----AVVS 121

Query: 138 EVDKNRLFWETCLAS 145
           E+D+NR+FWE CLAS
Sbjct: 122 EMDQNRMFWEACLAS 128

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K5199.1e-5989.73Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G390190 PE=4 SV=1[more]
A0A1S3BRI26.8e-5485.81glutamic acid-rich protein OS=Cucumis melo OX=3656 GN=LOC103492721 PE=4 SV=1[more]
A0A5A7UVG03.4e-5387.67Glutamic acid-rich protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaff... [more]
A0A6J1JVN09.9e-2962.50uncharacterized protein LOC111488264 OS=Cucurbita maxima OX=3661 GN=LOC111488264... [more]
A0A6J1DA361.3e-2560.14uncharacterized protein LOC111018429 OS=Momordica charantia OX=3673 GN=LOC111018... [more]
Match NameE-valueIdentityDescription
XP_011659319.11.05e-7789.73nuclear polyadenylated RNA-binding protein 3 [Cucumis sativus] >KGN44840.1 hypot... [more]
XP_008451422.11.88e-7185.81PREDICTED: glutamic acid-rich protein [Cucumis melo][more]
KAA0057545.19.85e-7187.67glutamic acid-rich protein [Cucumis melo var. makuwa][more]
XP_038896353.11.77e-5275.00uncharacterized protein LOC120084618 [Benincasa hispida][more]
XP_022991734.15.92e-4063.70uncharacterized protein LOC111488264 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
AT2G47950.12.6e-0533.33unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 38..101
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 75..101
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 41..60
NoneNo IPR availablePANTHERPTHR35726GLUTAMIC ACID-RICH PROTEIN-LIKEcoord: 19..144
NoneNo IPR availablePANTHERPTHR35726:SF4GLUTAMIC ACID-RICH PROTEIN-LIKEcoord: 19..144

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy1G016070.1Chy1G016070.1mRNA