Chy1G015630 (gene) Cucumber (hystrix) v1

Overview
NameChy1G015630
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionPentatricopeptide repeat-containing protein
LocationchrH01: 21603488 .. 21604227 (-)
RNA-Seq ExpressionChy1G015630
SyntenyChy1G015630
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTTCCAAGACCCTCCTCCCTTCCGCTTCTTTCAAACCTAACCTCTCCTCTTCATGTACTCACTCTTCCACTATTCCATCATCAATTCCCCAAACTTCCTCTACTAATCATCCTAATCCTATATTACCCGCTGCTTTCATCACAGAAGGATTTCGTTTCATCACCCTCTTTCATTGTTCCTACGCAATTGCAAGACTGGTAACATTACTGCAATTCGAGCATTTCATTTCTTTGACCTAATGTTGCGTTCATATCCTATCCCCCCCATTTCTTCTTTCAATCGTTTACTTGGTGGCCTTGCTAAGATTAACCATTGCTCTCAACTATTTTCTCACTATAATAAAACGCGCCTTGCTGGATCGGGTTAACGAAGGTCTTGCGGCCATGGCAGGGATTTTAAGGAGAGGTTATATTCCCAATAGTCACATATACGACCTTGATTGAGGGCTTGTGTATGGAGTATAGGATTAGTGAAGCCACGCGGTTATTTTTCAAAATGCAAAAATTAGGTTGTACGCCCGATGTGGTTACTTATAGGACTTTGATCAAGGGGCTATGCCAAACCGGAAATTTTAACATTGCACTTAAGTTGCTTTCAGCTCAATGACACTAGTCAATATGGGAATAATTGTAAGCCCGGTGTTATTACCCATAGTATCATCATAGATAGGCTTTGTAAGGTTGGACGTGAAGACGAGGCAAAAGAACATTTTGAGGAAATGAAAGCTCAGGAATGA

mRNA sequence

ATGCCTTCCAAGACCCTCCTCCCTTCCGCTTCTTTCAAACCTAACCTCTCCTCTTCATGTACTCACTCTTCCACTATTCCATCATCAATTCCCCAAACTTCCTCTACTAATCATCCTAATCCTATATTACCCGCTGCTTTCATCACAGAAGGATTTCGTTTCATCACCCTCTTTCATTGTTCCTACGCAATTGCAAGACTGCTCAATGACACTAGTCAATATGGGAATAATTGTAAGCCCGGTGTTATTACCCATAGTATCATCATAGATAGGCTTTGTAAGGTTGGACGTGAAGACGAGGCAAAAGAACATTTTGAGGAAATGAAAGCTCAGGAATGA

Coding sequence (CDS)

ATGCCTTCCAAGACCCTCCTCCCTTCCGCTTCTTTCAAACCTAACCTCTCCTCTTCATGTACTCACTCTTCCACTATTCCATCATCAATTCCCCAAACTTCCTCTACTAATCATCCTAATCCTATATTACCCGCTGCTTTCATCACAGAAGGATTTCGTTTCATCACCCTCTTTCATTGTTCCTACGCAATTGCAAGACTGCTCAATGACACTAGTCAATATGGGAATAATTGTAAGCCCGGTGTTATTACCCATAGTATCATCATAGATAGGCTTTGTAAGGTTGGACGTGAAGACGAGGCAAAAGAACATTTTGAGGAAATGAAAGCTCAGGAATGA

Protein sequence

MPSKTLLPSASFKPNLSSSCTHSSTIPSSIPQTSSTNHPNPILPAAFITEGFRFITLFHCSYAIARLLNDTSQYGNNCKPGVITHSIIIDRLCKVGREDEAKEHFEEMKAQE*
Homology
BLAST of Chy1G015630 vs. ExPASy TrEMBL
Match: A0A0A0K5M0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G387770 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 2.0e-13
Identity = 62/152 (40.79%), Postives = 71/152 (46.71%), Query Frame = 0

Query: 1   MPSKTLLPSASFKPNLSSSCTHSSTIPSSIPQTSSTNHPNPILPAAF------------- 60
           M SKTLLPSASFKPNLS  CT SSTIPSSIPQTSSTNHPN +LPAAF             
Sbjct: 1   MHSKTLLPSASFKPNLSPLCTLSSTIPSSIPQTSSTNHPNTVLPAAFNRKGISFHHPLSL 60

Query: 61  -----------ITEGFRFITLFHCSYAIARLLNDTSQYGNNCK----------------- 109
                       T+ F F  L   SY I  + +     G   K                 
Sbjct: 61  FLRNCKTGNITATQAFHFFDLMLRSYPIPPISSFNCLLGGLAKINHYSQLFSLYNKMRLA 120

BLAST of Chy1G015630 vs. ExPASy TrEMBL
Match: A0A0A0K784 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G380110 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 3.5e-13
Identity = 51/84 (60.71%), Postives = 54/84 (64.29%), Query Frame = 0

Query: 1  MPSKTLLPSASFKPNLSSSCTHSSTIPSSIPQTSSTNHPNPILPAAFITEGFRFITLFHC 60
          MPSKTLLPS SFKPNLS   THSSTIPSSIPQTSST+HPNPILPAAF  E   F      
Sbjct: 1  MPSKTLLPSPSFKPNLSPLSTHSSTIPSSIPQTSSTHHPNPILPAAFNREEISF------ 60

Query: 61 SYAIARLLNDTSQYGNNCKPGVIT 85
                  +  S +  NCK G IT
Sbjct: 61 -------HHPLSLFLRNCKTGNIT 71

BLAST of Chy1G015630 vs. ExPASy TrEMBL
Match: A0A5A7UUW8 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G00730 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 2.9e-12
Identity = 38/45 (84.44%), Postives = 41/45 (91.11%), Query Frame = 0

Query: 67  LLNDTSQYGNNCKPGVITHSIIIDRLCKVGREDEAKEHFEEMKAQ 112
           +LNDTSQYG NCKP VI++SIIID LCKVGREDEAKE FEEMKAQ
Sbjct: 171 MLNDTSQYGINCKPNVISYSIIIDGLCKVGREDEAKETFEEMKAQ 215

BLAST of Chy1G015630 vs. ExPASy TrEMBL
Match: A0A1S4DYL6 (pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103492586 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.2e-10
Identity = 35/45 (77.78%), Postives = 38/45 (84.44%), Query Frame = 0

Query: 67  LLNDTSQYGNNCKPGVITHSIIIDRLCKVGREDEAKEHFEEMKAQ 112
           +LNDTSQYG NCKP V  ++IIID LCKVGREDEA E FEEMKAQ
Sbjct: 171 MLNDTSQYGINCKPNVFNYNIIIDGLCKVGREDEANELFEEMKAQ 215

BLAST of Chy1G015630 vs. ExPASy TrEMBL
Match: A0A5D3C8J0 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold886G00440 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.2e-10
Identity = 35/45 (77.78%), Postives = 38/45 (84.44%), Query Frame = 0

Query: 67  LLNDTSQYGNNCKPGVITHSIIIDRLCKVGREDEAKEHFEEMKAQ 112
           +LNDTSQYG NCKP V  ++IIID LCKVGREDEA E FEEMKAQ
Sbjct: 171 MLNDTSQYGINCKPNVFNYNIIIDGLCKVGREDEANELFEEMKAQ 215

BLAST of Chy1G015630 vs. NCBI nr
Match: XP_031744845.1 (pentatricopeptide repeat-containing protein At3g22470, mitochondrial isoform X2 [Cucumis sativus])

HSP 1 Score: 104 bits (260), Expect = 8.34e-24
Identity = 67/111 (60.36%), Postives = 71/111 (63.96%), Query Frame = 0

Query: 1   MPSKTLLPSASFKPNLSSSCTHSSTIPSSIPQTSSTNHPNPILPAAFITEGFRFITLFHC 60
           M SKTLLPSASFKPNLS  CT SSTIPSSIPQTSSTNHPN +LPAAF  +G  F    H 
Sbjct: 1   MHSKTLLPSASFKPNLSPLCTLSSTIPSSIPQTSSTNHPNTVLPAAFNRKGISF----H- 60

Query: 61  SYAIARLLNDTSQYGNNCKPGVITHSIIIDRLCKVGREDEAKEHFEEMKAQ 111
                   +  S +  NCK          D LCKVG EDEAKE FEEMKAQ
Sbjct: 61  --------HPLSLFLRNCKT---------DGLCKVGHEDEAKEIFEEMKAQ 89

BLAST of Chy1G015630 vs. NCBI nr
Match: XP_011659273.2 (pentatricopeptide repeat-containing protein At3g22470, mitochondrial [Cucumis sativus] >KAE8646303.1 hypothetical protein Csa_016074 [Cucumis sativus])

HSP 1 Score: 96.3 bits (238), Expect = 2.11e-20
Identity = 89/266 (33.46%), Postives = 93/266 (34.96%), Query Frame = 0

Query: 1   MPSKTLLPSASFKPNLSSSCTHSSTIPSSIPQTSSTNHPNPILPAAFITEGFRF------ 60
           MPSKTLLPS SFKPNLS   THSSTIPSSIPQTSST+HPNPILPAAF  E   F      
Sbjct: 1   MPSKTLLPSPSFKPNLSPLSTHSSTIPSSIPQTSSTHHPNPILPAAFNREEISFHHPLSL 60

Query: 61  ------------ITLFH------------------------------------------- 111
                       I  FH                                           
Sbjct: 61  FLRNCKTGNITAIQAFHFFDLMMRSHPIPPISSFNRLLGGLAKINHYSQLFSLYNEMRLA 120

BLAST of Chy1G015630 vs. NCBI nr
Match: XP_011659291.1 (pentatricopeptide repeat-containing protein At1g62914, mitochondrial isoform X1 [Cucumis sativus])

HSP 1 Score: 85.1 bits (209), Expect = 1.60e-16
Identity = 83/266 (31.20%), Postives = 92/266 (34.59%), Query Frame = 0

Query: 1   MPSKTLLPSASFKPNLSSSCTHSSTIPSSIPQTSSTNHPNPILPAAFITEGFRF------ 60
           M SKTLLPSASFKPNLS  CT SSTIPSSIPQTSSTNHPN +LPAAF  +G  F      
Sbjct: 1   MHSKTLLPSASFKPNLSPLCTLSSTIPSSIPQTSSTNHPNTVLPAAFNRKGISFHHPLSL 60

Query: 61  ------------------------------ITLFHC------------------------ 111
                                         I+ F+C                        
Sbjct: 61  FLRNCKTGNITATQAFHFFDLMLRSYPIPPISSFNCLLGGLAKINHYSQLFSLYNKMRLA 120

BLAST of Chy1G015630 vs. NCBI nr
Match: KGN45331.2 (hypothetical protein Csa_015776 [Cucumis sativus])

HSP 1 Score: 85.1 bits (209), Expect = 1.80e-16
Identity = 83/266 (31.20%), Postives = 92/266 (34.59%), Query Frame = 0

Query: 1   MPSKTLLPSASFKPNLSSSCTHSSTIPSSIPQTSSTNHPNPILPAAFITEGFRF------ 60
           M SKTLLPSASFKPNLS  CT SSTIPSSIPQTSSTNHPN +LPAAF  +G  F      
Sbjct: 1   MHSKTLLPSASFKPNLSPLCTLSSTIPSSIPQTSSTNHPNTVLPAAFNRKGISFHHPLSL 60

Query: 61  ------------------------------ITLFHC------------------------ 111
                                         I+ F+C                        
Sbjct: 61  FLRNCKTGNITATQAFHFFDLMLRSYPIPPISSFNCLLGGLAKINHYSQLFSLYNKMRLA 120

BLAST of Chy1G015630 vs. NCBI nr
Match: KAA0059713.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK26151.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 80.9 bits (198), Expect = 5.30e-15
Identity = 38/45 (84.44%), Postives = 41/45 (91.11%), Query Frame = 0

Query: 67  LLNDTSQYGNNCKPGVITHSIIIDRLCKVGREDEAKEHFEEMKAQ 111
           +LNDTSQYG NCKP VI++SIIID LCKVGREDEAKE FEEMKAQ
Sbjct: 171 MLNDTSQYGINCKPNVISYSIIIDGLCKVGREDEAKETFEEMKAQ 215

BLAST of Chy1G015630 vs. TAIR 10
Match: AT2G17140.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 44.3 bits (103), Expect = 7.6e-05
Identity = 25/60 (41.67%), Postives = 33/60 (55.00%), Query Frame = 0

Query: 59  HCSYAIARLLN------DTSQYGNNCKPGVITHSIIIDRLCKVGREDEAKEHFEEMKAQE 113
           H S A+  L N      D S   NNC P +IT+S +++ LCK GR  EAK  F EM  ++
Sbjct: 495 HGSAALGNLGNSYIGLVDDSLIENNCLPDLITYSTLLNGLCKAGRFAEAKNLFAEMMGEK 554

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K5M02.0e-1340.79Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G387770 PE=4 SV=1[more]
A0A0A0K7843.5e-1360.71Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G380110 PE=4 SV=1[more]
A0A5A7UUW82.9e-1284.44Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A1S4DYL61.2e-1077.78pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like OS=Cuc... [more]
A0A5D3C8J01.2e-1077.78Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
Match NameE-valueIdentityDescription
XP_031744845.18.34e-2460.36pentatricopeptide repeat-containing protein At3g22470, mitochondrial isoform X2 ... [more]
XP_011659273.22.11e-2033.46pentatricopeptide repeat-containing protein At3g22470, mitochondrial [Cucumis sa... [more]
XP_011659291.11.60e-1631.20pentatricopeptide repeat-containing protein At1g62914, mitochondrial isoform X1 ... [more]
KGN45331.21.80e-1631.20hypothetical protein Csa_015776 [Cucumis sativus][more]
KAA0059713.15.30e-1584.44pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK26151... [more]
Match NameE-valueIdentityDescription
AT2G17140.17.6e-0541.67Pentatricopeptide repeat (PPR) superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 83..111
e-value: 5.5E-5
score: 21.1
IPR002885Pentatricopeptide repeatPFAMPF12854PPR_1coord: 77..109
e-value: 1.3E-9
score: 37.6
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 81..112
score: 9.382931
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 62..112
e-value: 9.7E-8
score: 33.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..39

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy1G015630.1Chy1G015630.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding