Chy1G013820 (gene) Cucumber (hystrix) v1

Overview
NameChy1G013820
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH01: 18672551 .. 18677660 (-)
RNA-Seq ExpressionChy1G013820
SyntenyChy1G013820
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATACCCATATTTTCAAAGGCCCCCTTCTTCGTCGTCTTCTTCATGCCCAGCCCACTACTCGCAGAGGTCGCATAGTCCCTCATTTTCAACTCCATCGAAACCAACCTCGACGTTGGAGACTCAGTGTGACAGAAATTAGGGACAAATAGGGTTTCTCAACGATGCTTCATGGCTGACATTTGCAGGGACGTGCTGTGTTCTTGGCCAATTTTCCTTCCATTTTAATACAACCAACTTTTTTTCCCTCGCACAAAACCCTAGGGCACACCAAGCTGAGGGAACCAACTGTCTGTCTTCTCCAATAATAGCCTTCCCAGCTTCCAATTTCTTCACTCTCTTGGAAATTCAGGTGATTATTTTCTTGCTTGCTGGTTTTCGGTTCAATTCTCCGAAACCCTAGAATTTTAAATTTGGGGATTTGCCAGGGGTGCAATGATTTTGGGTTATTCGACGTTAGGGGATTTAATGATTATGTGATTGTGTTTCGTATGGGTTATGCAATGTGATTGCGTGCATCGAGGCTAGTGTTGCTGCCCTGTTAATTCATGATTAATTGACATGGGCACGAAAATTTATCGTGTTTGACGCATATGTGTAGAAAATTCCATTGAGTTTTTTGAAATGGTAAGTTTATTGTGTCTGAATCTTCATTTCATTCGTCATGGACACACACGTTTGGAAATTTACAAGACAATTAGTTGTAGCTGCCATGCTTTAGCTCCCACGGTAGCTGGTTTTCATATTAAATATTATGCTTGTAACCTTACCTCTTTATATAATTCATTTCATCTGTCTATTTAGTTTACTCGTTGTCATATAGTTGGTGGTGCTACAGATGCTGGCTTCAGAGTATCCGTCTTTCGCTCAAATCCTTTTGTGTCTGTGTATGCTCTGTACTGACGTATATTACCTTTTAGCTATTTTAAGCAATGGCGTTGTGCTTATTAGAACAGCTCAGTTGTCTTTTGTTCCTTTTCTATGTGGCGTTTCCTGTTAAAGGTATATCTTAAAGTTTTAACCAAACTAGACTTGGTAAAAGGATGGAGCACATTTTAAGGATGGGAGGCATCATTGATATTGGAAATTAAGTCTAAGTTGATTAGGTACCTACTTGCTTTTCCATGGTTGGGATGGTGATCAATAGAGACAATTAGAAAATGTAAATGGCTTAGGGGGTTGGATTTGAATTTGTTGGCAACCAGATGTAGAAGAGTTTGGTGGTTGTCTTGTGAGTTTGCTAGTATAATCAAGGTGCACTTAAGTTGGTATGGACACACATAGACATCTAGTTTAATCAAATCCGAGCTTAGGGTTTTAGACCCCTTGAAACTACATGCTAGATATTTTCTAATATTGAAAGATCTAGTATAGGTTTATAGGCTATTCTCTGTTAGGAACTTTAGACTAGTTTTTCTACCAAACATCATAATACCTTCTGAATCTAGTTCAGTGGTAGAAGGACCTGCTACCCAAGCTACCAGTCGTGGGTTCCAATCTCGCCCCTTCCAAACATCATAATCTGTGTATATAAAATATATTCCCCCGACAAAATACATAATTTAGTCCCTAATGCTTGTTTCATTTTTTAGCTTCATCACCGATTTTTTAGAATTGCAATTTGATCTTTCATATATTGAACCTTTTCAAGTAAGTCATTAACACTTAAGAATAGTGAAGTATAAATAGTTAGTATAATTGCATTTCAATGGGTTCATTTTCTAACAGCAAGCTTTTTGATTTTGAGTTGGATAAGTTGCTCTCTAAGAAGCATTGACACGGATACGAGACACGAATACGACACGGATGCGGCGACACACCATATTCTAAAAATCTAGGATATGACACGTTTATTAAAATATTCTTTTTAAAAATATATATATCATTCTTACAGTAAATGAATTGATGCATTTATATGCTTAAAAGACTTAGTTTGATGTGTTTCATGACCAAAAGTTATTATTATTGTCATATGTGTCTATTTGGTCTACTTAACAAGTGTTCTATGCATGTCTAGTATATTTGTTGCACTAGCAAGGGTGGGTGTCCACCAAGTGCCAGAGTGTCCAAGTGTCCGACACGTGTTGGACACTGACATGCTATCCAAAAATGAAGTGTCCGTTCTTCTTAGGTTGCTCTGTTCCAGGTTTTAAAGGTGTGAGTAGGTTTTAACGTAATGAATTTCTGCCACTTTTTTGTTTTGTTTTGTTTTGTTTCTTTGTTTTAGTTTTTTAAATTTTTTTAAAAAAGTAAATAGGAACAATTCGTTGATTAAATGAAATGATACAAGATTTCTTTTTTTGGATATGGAAGAATTTAAGCTGAGCAATATTACACGTACAACAATATAGAGCATTAACTGAGGCTTTTAGGTCTTCAAATTCGGGAGCATTCTTTGTCATGAAAATTCTAGAGTTTCTTTCATTCGAAATCTTCCAAGTAACTGCTCGCCTAAGACTGGTGGATTAAAAAAAAGGATCTTCAAATACTGACTTGAGTAACAGGGAGTATAATATAATAGGATTTTAGTGGATCTATGATGAGAAGCAATTTCATGTTGGGAAAGTTACTACATTCCAAGTCGTATGAATTTAGTAGGTTTTCTTTTTTGTTTTATTAGGTGATTGTGGTATGCTTATTAGTTATTTCTTTAAATGTAGAGACTTTTTTTTTAAAAATTCAATAACACTAATATCTGGGTGTTTGTTTTTAAAATTTTAAAATTAATAATAAAAATAATTTAGTCCCTATCATTTTGGAAGTTTCAATTTAGTTCCTGACGTTTTAACGTTTTTCAATTATATCCTTCTTGCTAGTGATTGTTAAATATTGGTTGGTGATAACCTAACATGACCTTATATTCAGTGAAATGATAACAATTTAGAGGAGTTAGGCCTCTTCAGAGAGCTAAATTGCTACTTCAAATTTATAAGAAGTTGAGGTACATTTTGACTTTTCTTCTCTTTGGTAAAGATCTCCAAACTCTCTATGTGCCATGCCATGTTGGTTCACCAATGATCATTTCTTAACATTCACTTACGATGAGGGTACAATTGAAAAATGTAAGAATGTAAGGGGCTACATTGAAATTTGTTATTAGTTGGGAGGAACTATACTGAAAACTACACTTGAAAGTTAGGGACTACAAATATTTAATTAAGTGTAAAAAATAAAATGTGTTTTGACCTTACAGTCATTTTATCTGTGAATTTTAATGTTACTTGATAGTAAGGTTTTAATTGAAAACAAATCTATATGTTGAACAATGGAGTTTTCTTCAAAGATTGGGGACATAATCATAAGGAAAAAGAAATATGTTTAGCCTACTTATTTAGCAATCCTGGAATGATATTTTGTCTTTTCCTATTTTTTACATGATATTTTCATTATTTATTTGCCTATGATTTTTTCTTGTTTACTGAAGATAAAATAAGGTAACCATCGTGGATTGGTCTAGTGGTAAATAAGGAAACATCCTTTTAATAAAGAGCTAAGAGGTTATGGATTCAATCCATGGTGGCCACCTACCTAGTATAATACCTTATGAGTTTCCTTGAAACCTAAATGTTGTAGGGTCAGATGAATTGTTTTGTGAGATTAGTCAAGGTGCACGTAAGCTGACTTTTGAACATTCATGTATATAAAAGAAAAGATAAATAAGGAAATGTCTCTCTCTCGCTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTTCATTAATGTTTAAGGCAAGATCAAAGGAAAAGCCACGTAAGGGCCAGGGAAGAGAGAACCCCCTCCCCTAGGAACCAATTATATTTTTTCCCAAATTGTTTTATATCAATTCAATTGGGTAATTAAAAAATAATTGGTTATATCTATGACCAATTTTTCTATAGTGTGGTTGGTGTATTTTCGGGAAGATTAGTGGGTGGGAGGTAGTCCCTTTGCTCTGTGTTCCTCGTCTTTATCATCTTTCCTCCTTTAAAAGTTTGTTTGATTTTTTATCTTCGTGGTGGAGTTCGGTGTCCTTTTGTTTTGGGGTTATTCGCTTTTTGATCGATAGGAAAGCGACTAATGGCATTTCGTTGTTGGCATTATTGGAAGTTTAACACTAGGTGTGGGAGAAGGCATAGGCTTATTTGGAATCCCTTTGGATGGTTTCTCTTCAAACTCCTTTTTGTTTGTTGTCTGGTGGACCCTTCTTTTTCTAGGGAGTTTCTTTTCTTTGCTTGTTGGAGGATTGAGATTGCTAAGAAAGTGAAGTTTTTATTTGGCAAGTTTTACATGGATGCGTGAACACCTTGGATCGACTCTCAAGGAGGATATTGTTGTTATGGGGTCCATTTTGTTGTATTTTGTACAGGAAGGAGAAGGAGACTTGGATCACATCTTTTGTAGATCGATTTTACATTTTCGGTGCAGAATCTGTTTTTCTATTTTGGCTTGCATAGGTCTGTCAGTGATATGATCAGGGAGTTCCTCCTCCATCCGCCTTGCTGTGAGAAGCTTGCTGCTCCTTATGGTTGGCGGCGTGTGTGTTATCATACAGAATTTTTGGGGTGAATGACCAATGGAGTGTTTGGATAAGGAGCCTAGATTCTTGGGCCCTTATTAGGTTTCTTTTTCTCTTCGAAGTTTCTATTAGATAGGCATTCTTTTGCTTGCTTGGTCTCATTTTTTGTGGAGAGGGCCTCTTTTTGTGGGCTTTTTTTTAATGTGTGTATGTTCTTTTATTTTTACTCGATGAAAGTAGTTAAGTAGTTATGTTCTTTTGTGACTGCAGTCATTCATCACACACTGGACAATGGAATTGCTTTCTGTAATCTTCATTGCTATATATGCCTTATTGACAATGGTTTGCTCCACTATGTTGTGTGCTTACATTTCTGTTGGAAATAGTTCAAGTCATCATGTGCATAGATTTGACTAGTTCCATGTGGTGGTTGATGCTGAACTTATGCACATCTCCAAACTTGATTTAGTGTCTGATTTTTTATTGTATTCTACTATTTATTTTCAAGTTTTGAGCATTTTCTTTATTGATTTTGATGGGTTTGATTGATGAGAGAAAATTATTGTAGGTAATGATGCAGGAATGCATGGATGCTGCTGAAGCTCTGCTTTCTTAG

mRNA sequence

ATGAATACCCATATTTTCAAAGGCCCCCTTCTTCGTCGTCTTCTTCATGCCCAGCCCACTACTCGCAGAGGGACGTGCTGTGTTCTTGGCCAATTTTCCTTCCATTTTAATACAACCAACTTTTTTTCCCTCGCACAAAACCCTAGGGCACACCAAGCTGAGGGAACCAACTGTCTGTCTTCTCCAATAATAGCCTTCCCAGCTTCCAATTTCTTCACTCTCTTGGAAATTCAGGTAATGATGCAGGAATGCATGGATGCTGCTGAAGCTCTGCTTTCTTAG

Coding sequence (CDS)

ATGAATACCCATATTTTCAAAGGCCCCCTTCTTCGTCGTCTTCTTCATGCCCAGCCCACTACTCGCAGAGGGACGTGCTGTGTTCTTGGCCAATTTTCCTTCCATTTTAATACAACCAACTTTTTTTCCCTCGCACAAAACCCTAGGGCACACCAAGCTGAGGGAACCAACTGTCTGTCTTCTCCAATAATAGCCTTCCCAGCTTCCAATTTCTTCACTCTCTTGGAAATTCAGGTAATGATGCAGGAATGCATGGATGCTGCTGAAGCTCTGCTTTCTTAG

Protein sequence

MNTHIFKGPLLRRLLHAQPTTRRGTCCVLGQFSFHFNTTNFFSLAQNPRAHQAEGTNCLSSPIIAFPASNFFTLLEIQVMMQECMDAAEALLS*
Homology
[Close]
BLAST of Chy1G013820 vs. ExPASy TrEMBL
Match: A0A0A0K9W9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G342000 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.1e-44
Identity = 91/93 (97.85%), Postives = 92/93 (98.92%), Query Frame = 0 

Query: 1  MNTHIFKGPLLRRLLHAQPTTRRGTCCVLGQFSFHFNTTNFFSLAQNPRAHQAEGTNCLS 60
          MNTHIFKGPLLRRLLHAQPTTRRGTCCVLGQFSFHFN+TNFFSLAQNPRAHQAEGTN LS
Sbjct: 1  MNTHIFKGPLLRRLLHAQPTTRRGTCCVLGQFSFHFNSTNFFSLAQNPRAHQAEGTNSLS 60

Query: 61 SPIIAFPASNFFTLLEIQVMMQECMDAAEALLS 94
          SPIIAFPASNFFTLLEIQVMMQECMDAAEALLS
Sbjct: 61 SPIIAFPASNFFTLLEIQVMMQECMDAAEALLS 93

[Close]
BLAST of Chy1G013820 vs. NCBI nr
Match: KGN44606.1 (hypothetical protein Csa_016766 [Cucumis sativus])

HSP 1 Score: 189 bits (480), Expect = 1.68e-60
Identity = 91/93 (97.85%), Postives = 92/93 (98.92%), Query Frame = 0 

Query: 1  MNTHIFKGPLLRRLLHAQPTTRRGTCCVLGQFSFHFNTTNFFSLAQNPRAHQAEGTNCLS 60
          MNTHIFKGPLLRRLLHAQPTTRRGTCCVLGQFSFHFN+TNFFSLAQNPRAHQAEGTN LS
Sbjct: 1  MNTHIFKGPLLRRLLHAQPTTRRGTCCVLGQFSFHFNSTNFFSLAQNPRAHQAEGTNSLS 60

Query: 61 SPIIAFPASNFFTLLEIQVMMQECMDAAEALLS 93
          SPIIAFPASNFFTLLEIQVMMQECMDAAEALLS
Sbjct: 61 SPIIAFPASNFFTLLEIQVMMQECMDAAEALLS 93

[Close]
BLAST of Chy1G013820 vs. NCBI nr
Match: KAG7025407.1 (hypothetical protein SDJN02_11902, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 96.3 bits (238), Expect = 1.28e-23
Identity = 56/94 (59.57%), Postives = 59/94 (62.77%), Query Frame = 0 

Query: 1  MNTHIFKGPLLRRLLHAQPTTRRGTCCVLGQF-SFHFNTTNFFSLAQNPRAHQAEGTNCL 60
          M+THIFKGP       + P    G    L  F S   + T   SLAQNPRAHQAEG N  
Sbjct: 1  MDTHIFKGPFFIVFFMSSPLLAEGRAVFLPNFHSILIHPT--ISLAQNPRAHQAEGINSP 60

Query: 61 SSPIIAFPASNFFTLLEIQVMMQECMDAAEALLS 93
           SPIIA   SNF TL EIQVMMQECMDAAEALLS
Sbjct: 61 GSPIIALLPSNFITLFEIQVMMQECMDAAEALLS 92

The following BLAST results are available for this feature:
BLAST of Chy1G013820 vs.
Match NameE-valueIdentityDescription
BLAST of Chy1G013820 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K9W91.1e-4497.85Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G342000 PE=4 SV=1[more]
BLAST of Chy1G013820 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN44606.11.68e-6097.85hypothetical protein Csa_016766 [Cucumis sativus][more]
KAG7025407.11.28e-2359.57hypothetical protein SDJN02_11902, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Chy1G013820 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy1G013820.1Chy1G013820.1mRNA