Chy1G012780 (gene) Cucumber (hystrix) v1

Overview


Name	Chy1G012780
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Myb_DNA-bind_3 domain-containing protein
Location	chrH01: 15973739 .. 15974336 (-)
RNA-Seq Expression	Chy1G012780
Synteny	Chy1G012780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCACAAAAATCATCTGCACAACGTTGTGTCAATGAGGTTGTTGAGATTGATGGATTAGGAAGTGAGGGACCATACTCAGACAAGAGTGAAGCTCTGTTTATAGACTTAATGGATGAAGAGGTTGCAAAAGGAAATGGACCAACTACAACATTTACAAAGACTAGTTGGAATTATATAAGAAGCCAACTAAATGCTAGTACATGATATAATTATTCTCATAATCAATTGAAAAACAAGTTCAATAAACTAAGACAATGGTTGGGACCCATTCTTAGGCACCATCAACCTTGAAGAGGTGGAACGAGCTTTTTAAGGTATAATACTTACATTTATTTTCTTTCTAATCATCTGTAAGCAAATAAGAGACCTAAAAAATCTTCATTTTCTGAGCTGATTAAGAGAGCTAAAAAGTTTAGAAAAAGTGGTTTCCCACATTGTGAAAAGCTCGTGAGGATTTTTGGAGATACTACTGCAACAGGTATAAATGCTTGCCAATCAACAAGACTTATTTCAAATTATGAAAATAAAAATGATGTTGCAAACAATACAAACTTTGGTGTTGAAGAGAATGATAAAGGAAAAAGCAAAAAACAAG

mRNA sequence

ATGTCACAAAAATCATCTGCACAACGTTGTGTCAATGAGGTTGTTGAGATTGATGGATTAGGAAGTGAGGGACCATACTCAGACAAGAGTGAAGCTCTGTTTATAGACTTAATGGATGAAGAGGTTGCAAAAGGAAATGGACCAACTACAACATTTACAAAGACTAGTTGGAATTATATAAGAAGCCAACTAAATGCTAGCACCATCAACCTTGAAGAGGTGGAACGAGCTTTTTAAGCTGATTAAGAGAGCTAAAAAGTTTAGAAAAAGTGGTTTCCCACATTGTGAAAAGCTCGTGAGGATTTTTGGAGATACTACTGCAACAGGTATAAATGCTTGCCAATCAACAAGACTTATTTCAAATTATGAAAATAAAAATGATGTTGCAAACAATACAAACTTTGGTGTTGAAGAGAATGATAAAGGAAAAAGCAAAAAACAAG

Coding sequence (CDS)

ATGTCACAAAAATCATCTGCACAACGTTGTGTCAATGAGGTTGTTGAGATTGATGGATTAGGAAGTGAGGGACCATACTCAGACAAGAGTGAAGCTCTGTTTATAGACTTAATGGATGAAGAGGTTGCAAAAGGAAATGGACCAACTACAACATTTACAAAGACTAGTTGGAATTATATAAGAAGCCAACTAAATGCTAGCACCATCAACCTTGAAGAGGTGGAACGAGCTTTTTAAGCTGATTAAGAGAGCTAAAAAGTTTAGAAAAAGTGGTTTCCCACATTGTGAAAAGCTCGTGAGGATTTTTGGAGATACTACTGCAACAGGTATAAATGCTTGCCAATCAACAAGACTTATTTCAAATTATGAAAATAAAAATGATGTTGCAAACAATACAAACTTTGGTGTTGAAGAGAATGATAAAGGAAAAAGCAAAAAACAAG

Protein sequence

MSQKSSAQRCVNEVVEIDGLGSEGPYSDKSEALFIDLMDEEVAKGNGPTTTFTKTSWNYIRSQLNASTINLEEVERAF*AD*ES*KV*KKWFPTL*KAREDFWRYYCNRYKCLPINKTYFKL*K*K*CCKQYKLWC*RE**RKKQKTX

Homology

[Close]

BLAST of Chy1G012780 vs. ExPASy TrEMBL
Match: A0A1S3CFA7 (L10-interacting MYB domain-containing protein-like OS=Cucumis melo OX=3656 GN=LOC103500275 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.4e-14
Identity = 42/54 (77.78%), Postives = 49/54 (90.74%), Query Frame = 0


Query: 15 VEIDGLGSEGPYSDKSEALFIDLMDEEVAKGNGPTTTFTKTSWNYIRSQLNAST 69
          V+IDGL  E  +S+KSEALF+DLMDEEVAKGN PTTTFTKTSWNY+RS+LNA+T
Sbjct: 3  VDIDGLKGERLWSNKSEALFVDLMDEEVAKGNRPTTTFTKTSWNYMRSELNANT 56

[Close]

BLAST of Chy1G012780 vs. ExPASy TrEMBL
Match: A0A1S4DUG7 (L10-interacting MYB domain-containing protein-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487000 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.8e-09
Identity = 33/58 (56.90%), Postives = 44/58 (75.86%), Query Frame = 0


Query: 11 VNEVVEIDGLGSEGPYSDKSEALFIDLMDEEVAKGNGPTTTFTKTSWNYIRSQLNAST 69
          + +V +ID    +GP+S K+E +FI+LM++EVAKGN PTTTFTKTSW YI+ QL   T
Sbjct: 6  IEDVHQIDVSRFDGPWSFKNETIFINLMEDEVAKGNRPTTTFTKTSWTYIKEQLYVKT 63

[Close]

BLAST of Chy1G012780 vs. ExPASy TrEMBL
Match: A0A1S3B8P1 (uncharacterized protein LOC103487000 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487000 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.8e-09
Identity = 33/58 (56.90%), Postives = 44/58 (75.86%), Query Frame = 0


Query: 11 VNEVVEIDGLGSEGPYSDKSEALFIDLMDEEVAKGNGPTTTFTKTSWNYIRSQLNAST 69
          + +V +ID    +GP+S K+E +FI+LM++EVAKGN PTTTFTKTSW YI+ QL   T
Sbjct: 32 IEDVHQIDVSRFDGPWSFKNETIFINLMEDEVAKGNRPTTTFTKTSWTYIKEQLYVKT 89

[Close]

BLAST of Chy1G012780 vs. ExPASy TrEMBL
Match: A0A6J5WJY6 (SRP54 domain-containing protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS15296 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.4e-06
Identity = 28/53 (52.83%), Postives = 39/53 (73.58%), Query Frame = 0


Query: 13  EVVEIDGLGSEGPYSDKSEALFIDLMDEEVAKGNGPTTTFTKTSWNYIRSQLN 66
           +VVEID  G +GP+   +E +FIDLMDEE++K N  TT F+KTSW  + S+L+
Sbjct: 511 DVVEIDEKGKDGPWPKNNEVIFIDLMDEEISKDNRSTTIFSKTSWQTMISELH 563

[Close]

BLAST of Chy1G012780 vs. ExPASy TrEMBL
Match: A0A5P1FHJ2 (Myb_DNA-bind_3 domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C02F7900 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.8e-06
Identity = 33/64 (51.56%), Postives = 40/64 (62.50%), Query Frame = 0


Query: 5  SSAQRCVNEVVEIDGLGSEGPYSDKSEALFIDLMDEEVAKGNGPTTTFTKTSWNYIRSQL 64
          SS  R VNEVVEI      G +S+  E  FIDLM EEV KGN  TTTFT++SW ++  +L
Sbjct: 2  SSENRDVNEVVEISPSQGVGFWSENVELYFIDLMVEEVKKGNRHTTTFTRSSWKFMEHEL 61

Query: 65 NAST 69
             T
Sbjct: 62 KKKT 65

[Close]

BLAST of Chy1G012780 vs. NCBI nr
Match: XP_008461742.1 (PREDICTED: L10-interacting MYB domain-containing protein-like [Cucumis melo])

HSP 1 Score: 89.4 bits (220), Expect = 1.79e-18
Identity = 42/54 (77.78%), Postives = 49/54 (90.74%), Query Frame = 0


Query: 15 VEIDGLGSEGPYSDKSEALFIDLMDEEVAKGNGPTTTFTKTSWNYIRSQLNAST 68
          V+IDGL  E  +S+KSEALF+DLMDEEVAKGN PTTTFTKTSWNY+RS+LNA+T
Sbjct: 3  VDIDGLKGERLWSNKSEALFVDLMDEEVAKGNRPTTTFTKTSWNYMRSELNANT 56

[Close]

BLAST of Chy1G012780 vs. NCBI nr
Match: XP_038904554.1 (L10-interacting MYB domain-containing protein-like isoform X3 [Benincasa hispida])

HSP 1 Score: 81.3 bits (199), Expect = 4.47e-15
Identity = 36/59 (61.02%), Postives = 46/59 (77.97%), Query Frame = 0


Query: 10 CVNEVVEIDGLGSEGPYSDKSEALFIDLMDEEVAKGNGPTTTFTKTSWNYIRSQLNAST 68
          C+ +V +ID    +GP+S K+E++FIDLM+EEVAKGN PTTTFTKTSW YI+ QL   T
Sbjct: 5  CIEDVTQIDASKFDGPWSFKNESIFIDLMEEEVAKGNRPTTTFTKTSWTYIKEQLYVRT 63

[Close]

BLAST of Chy1G012780 vs. NCBI nr
Match: XP_038904553.1 (L10-interacting MYB domain-containing protein-like isoform X2 [Benincasa hispida])

HSP 1 Score: 81.3 bits (199), Expect = 4.73e-15
Identity = 36/59 (61.02%), Postives = 46/59 (77.97%), Query Frame = 0


Query: 10 CVNEVVEIDGLGSEGPYSDKSEALFIDLMDEEVAKGNGPTTTFTKTSWNYIRSQLNAST 68
          C+ +V +ID    +GP+S K+E++FIDLM+EEVAKGN PTTTFTKTSW YI+ QL   T
Sbjct: 10 CIEDVTQIDASKFDGPWSFKNESIFIDLMEEEVAKGNRPTTTFTKTSWTYIKEQLYVRT 68

[Close]

BLAST of Chy1G012780 vs. NCBI nr
Match: XP_038904552.1 (L10-interacting MYB domain-containing protein-like isoform X1 [Benincasa hispida])

HSP 1 Score: 81.3 bits (199), Expect = 5.85e-15
Identity = 36/59 (61.02%), Postives = 46/59 (77.97%), Query Frame = 0


Query: 10 CVNEVVEIDGLGSEGPYSDKSEALFIDLMDEEVAKGNGPTTTFTKTSWNYIRSQLNAST 68
          C+ +V +ID    +GP+S K+E++FIDLM+EEVAKGN PTTTFTKTSW YI+ QL   T
Sbjct: 31 CIEDVTQIDASKFDGPWSFKNESIFIDLMEEEVAKGNRPTTTFTKTSWTYIKEQLYVRT 89

[Close]

BLAST of Chy1G012780 vs. NCBI nr
Match: XP_031738598.1 (L10-interacting MYB domain-containing protein [Cucumis sativus])

HSP 1 Score: 72.4 bits (176), Expect = 8.20e-12
Identity = 33/58 (56.90%), Postives = 44/58 (75.86%), Query Frame = 0


Query: 11 VNEVVEIDGLGSEGPYSDKSEALFIDLMDEEVAKGNGPTTTFTKTSWNYIRSQLNAST 68
          + +V +ID    +GP+S K+E +FI+LM++EVAKGN PTTTFTKTSW YI+ QL   T
Sbjct: 6  IEDVNQIDVSRFDGPWSFKNETIFINLMEDEVAKGNRPTTTFTKTSWTYIKEQLYVKT 63

[Close]

BLAST of Chy1G012780 vs. TAIR 10
Match: AT3G11290.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11310.1); Has 720 Blast hits to 435 proteins in 28 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 32; Plants - 682; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). )

HSP 1 Score: 41.6 bits (96), Expect = 6.5e-04
Identity = 18/47 (38.30%), Postives = 28/47 (59.57%), Query Frame = 0


Query: 22  SEGPYSDKSEALFIDLMDEEVAKGNGPTTTFTKTSWNYIRSQLNAST 69
           S+G +S  S  LF+DL+ +E  KGN P + + K +W  I   +N +T
Sbjct: 164 SKGYWSPSSHELFVDLLFQEALKGNRPDSHYPKETWKMILETINQNT 210

[Close]

BLAST of Chy1G012780 vs. TAIR 10
Match: AT5G05800.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11290.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 41.2 bits (95), Expect = 8.5e-04
Identity = 18/47 (38.30%), Postives = 27/47 (57.45%), Query Frame = 0


Query: 22  SEGPYSDKSEALFIDLMDEEVAKGNGPTTTFTKTSWNYIRSQLNAST 69
           ++G +S  +  LF+DL+ +E  KGN P T F K  W  I   +N +T
Sbjct: 166 TKGYWSPSTHKLFLDLLVQETLKGNRPDTHFNKEGWKTILGTINENT 212

[Close]

BLAST of Chy1G012780 vs. TAIR 10
Match: AT5G05800.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11290.1); Has 881 Blast hits to 512 proteins in 30 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 38; Plants - 833; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). )

HSP 1 Score: 41.2 bits (95), Expect = 8.5e-04
Identity = 18/47 (38.30%), Postives = 27/47 (57.45%), Query Frame = 0


Query: 22  SEGPYSDKSEALFIDLMDEEVAKGNGPTTTFTKTSWNYIRSQLNAST 69
           ++G +S  +  LF+DL+ +E  KGN P T F K  W  I   +N +T
Sbjct: 166 TKGYWSPSTHKLFLDLLVQETLKGNRPDTHFNKEGWKTILGTINENT 212

The following BLAST results are available for this feature:

BLAST of Chy1G012780 vs.


Match Name	E-value	Identity	Description

BLAST of Chy1G012780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CFA7	1.4e-14	77.78	L10-interacting MYB domain-containing protein-like OS=Cucumis melo OX=3656 GN=LO...	[more]
A0A1S4DUG7	1.8e-09	56.90	L10-interacting MYB domain-containing protein-like isoform X2 OS=Cucumis melo OX...	[more]
A0A1S3B8P1	1.8e-09	56.90	uncharacterized protein LOC103487000 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J5WJY6	1.4e-06	52.83	SRP54 domain-containing protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS1...	[more]
A0A5P1FHJ2	1.8e-06	51.56	Myb_DNA-bind_3 domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U...	[more]

BLAST of Chy1G012780 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008461742.1	1.79e-18	77.78	PREDICTED: L10-interacting MYB domain-containing protein-like [Cucumis melo]	[more]
XP_038904554.1	4.47e-15	61.02	L10-interacting MYB domain-containing protein-like isoform X3 [Benincasa hispida...	[more]
XP_038904553.1	4.73e-15	61.02	L10-interacting MYB domain-containing protein-like isoform X2 [Benincasa hispida...	[more]
XP_038904552.1	5.85e-15	61.02	L10-interacting MYB domain-containing protein-like isoform X1 [Benincasa hispida...	[more]
XP_031738598.1	8.20e-12	56.90	L10-interacting MYB domain-containing protein [Cucumis sativus]	[more]

BLAST of Chy1G012780 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G11290.1	6.5e-04	38.30	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G05800.1	8.5e-04	38.30	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G05800.2	8.5e-04	38.30	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024752	Myb/SANT-like domain	PFAM	PF12776	Myb_DNA-bind_3	coord: 27..70 e-value: 2.3E-5 score: 25.3

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy1G012780.1	Chy1G012780.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane
molecular_function	GO:0000166	nucleotide binding