Chy1G012570 (gene) Cucumber (hystrix) v1

Overview
NameChy1G012570
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionMediator of RNA polymerase II transcription subunit 12-like isoform X1
LocationchrH01: 15592192 .. 15592614 (-)
RNA-Seq ExpressionChy1G012570
SyntenyChy1G012570
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAACATACATTATATGTATGATGCATCTATTGTACCTGCTTTAGTTCAAAGGAGACGTGCCCGAGTGCAAGAGCCTGATGAATTGAAAGAAGTTGATCAACACATGGAAGAAGTACCTCCCGTGACACAAACATAGAGCGAGACTAGTTACGTTAGTCCACTGATGATGATACCAACATTTGTAACGAGATATTATGATTCAGGAGTCGGTCAATCGTCAGACTTTGAAACATAATATTACAATTTAGAGGCAGGTCCATCATCATCAAACTTTGGGCAAGAATACTATAATTTAGGGTTCGATCCATCATCTTTATACATGCATGGTCACGGGCGCCGTCGTGGAGAACATAAGGAATATTTGTATTACGAAGCATCTGCAGCAATACCCGACCAACTAGATAAGCAACAACTATAA

mRNA sequence

ATGGAGAACATACATTATATGTATGATGCATCTATTGTACCTGCTTTAGTTCAAAGGAGACGTGCCCGAGTGCAAGAGCCTGATGAATTGAAAGAAGTTGATCAACACATGGAAGAAGTACCTCCCGTGACACAAACATAGAGCGAGACTAGTTACGTTAGTCCACTGATGATGATACCAACATTTGTAACGAGATATTATGATTCAGGAGTCGGTCAATCGTCAGACTTTGAAACATAATATTACAATTTAGAGGCAGGTCCATCATCATCAAACTTTGGGCAAGAATACTATAATTTAGGGTTCGATCCATCATCTTTATACATGCATGGTCACGGGCGCCGTCGTGGAGAACATAAGGAATATTTGTATTACGAAGCATCTGCAGCAATACCCGACCAACTAGATAAGCAACAACTATAA

Coding sequence (CDS)

ATGGAGAACATACATTATATGTATGATGCATCTATTGTACCTGCTTTAGTTCAAAGGAGACGTGCCCGAGTGCAAGAGCCTGATGAATTGAAAGAAGTTGATCAACACATGGAAGAAGTACCTCCCGTGACACAAACATAGAGCGAGACTAGTTACGTTAGTCCACTGATGATGATACCAACATTTGTAACGAGATATTATGATTCAGGAGTCGGTCAATCGTCAGACTTTGAAACATAATATTACAATTTAGAGGCAGGTCCATCATCATCAAACTTTGGGCAAGAATACTATAATTTAGGGTTCGATCCATCATCTTTATACATGCATGGTCACGGGCGCCGTCGTGGAGAACATAAGGAATATTTGTATTACGAAGCATCTGCAGCAATACCCGACCAACTAGATAAGCAACAACTATAA

Protein sequence

MENIHYMYDASIVPALVQRRRARVQEPDELKEVDQHMEEVPPVTQT*SETSYVSPLMMIPTFVTRYYDSGVGQSSDFET*YYNLEAGPSSSNFGQEYYNLGFDPSSLYMHGHGRRRGEHKEYLYYEASAAIPDQLDKQQL*
Homology
[Close]
BLAST of Chy1G012570 vs. ExPASy TrEMBL
Match: A0A5A7UKC7 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold222G001140 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 8.9e-51
Identity = 103/139 (74.10%), Postives = 116/139 (83.45%), Query Frame = 0 

Query: 1   MENIHYMYDASIVPALVQRRRARVQEPDELKEVDQHMEEVPPVTQT*SETSYVSPLMMIP 60
           MENIHYMYD  IVPA VQRRR  VQEPD+L+EVDQH EEVPP+TQT SE +YVSP+MM+P
Sbjct: 599 MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTKSEHNYVSPVMMMP 658

Query: 61  TFVTRYYDSGVGQSSDFET*YYNLEAGPSSSNFGQEYYNLGFDPSSLYMHGHGRRRGEHK 120
           TF T YYDSGVGQSSDF   YYN EAG SS++FGQ+YY+LG DPSS YMHGHGR RGEH 
Sbjct: 659 TFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGEHN 718

Query: 121 EYLYYEASAAIPDQLDKQQ 140
           EYLYYE  AA+P+Q D+ Q
Sbjct: 719 EYLYYEVPAAVPEQSDELQ 737

[Close]
BLAST of Chy1G012570 vs. ExPASy TrEMBL
Match: A0A5A7SU33 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold400G00810 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 3.4e-50
Identity = 102/139 (73.38%), Postives = 116/139 (83.45%), Query Frame = 0 

Query: 1   MENIHYMYDASIVPALVQRRRARVQEPDELKEVDQHMEEVPPVTQT*SETSYVSPLMMIP 60
           MENIHYMYD  IVPA VQRRR  VQEPD+L+EVDQH EEVPP+TQT SE +YVSP+MM+P
Sbjct: 591 MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQSEHNYVSPVMMMP 650

Query: 61  TFVTRYYDSGVGQSSDFET*YYNLEAGPSSSNFGQEYYNLGFDPSSLYMHGHGRRRGEHK 120
           TF T YYDSGVGQSSDF   YYN EAG SS++FGQ+YY+LG DPSS YMHGHGR RGEH 
Sbjct: 651 TFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGEHN 710

Query: 121 EYLYYEASAAIPDQLDKQQ 140
           EYLYYE  AA+P+Q ++ Q
Sbjct: 711 EYLYYEVPAAVPEQSNELQ 729

[Close]
BLAST of Chy1G012570 vs. ExPASy TrEMBL
Match: A0A5D3BAB0 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001240 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 2.2e-49
Identity = 100/139 (71.94%), Postives = 116/139 (83.45%), Query Frame = 0 

Query: 1    MENIHYMYDASIVPALVQRRRARVQEPDELKEVDQHMEEVPPVTQT*SETSYVSPLMMIP 60
            MENIHYMYD  IVPA VQRRR  VQEPD+L+EVDQH +EVPP+TQT SE +YVSP+MM+P
Sbjct: 1090 MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGKEVPPMTQTQSEHNYVSPVMMMP 1149

Query: 61   TFVTRYYDSGVGQSSDFET*YYNLEAGPSSSNFGQEYYNLGFDPSSLYMHGHGRRRGEHK 120
            TF T YYDSGVGQSSDF   YYN +AG SS++FGQ+YY+LG DPSS YMHGHGR RG+H 
Sbjct: 1150 TFGTTYYDSGVGQSSDFGRGYYNSKAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGKHN 1209

Query: 121  EYLYYEASAAIPDQLDKQQ 140
            EYLYYE  AA+P+Q D+ Q
Sbjct: 1210 EYLYYEVPAAVPEQSDELQ 1228

[Close]
BLAST of Chy1G012570 vs. ExPASy TrEMBL
Match: A0A5A7T598 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G00500 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 2.2e-49
Identity = 100/139 (71.94%), Postives = 116/139 (83.45%), Query Frame = 0 

Query: 1   MENIHYMYDASIVPALVQRRRARVQEPDELKEVDQHMEEVPPVTQT*SETSYVSPLMMIP 60
           MENIHYMYD  IVPA VQRRR  VQEPD+L+EVDQH +EVPP+TQT SE +YVSP+MM+P
Sbjct: 329 MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGKEVPPMTQTQSEHNYVSPVMMMP 388

Query: 61  TFVTRYYDSGVGQSSDFET*YYNLEAGPSSSNFGQEYYNLGFDPSSLYMHGHGRRRGEHK 120
           TF T YYDSGVGQSSDF   YYN +AG SS++FGQ+YY+LG DPSS YMHGHGR RG+H 
Sbjct: 389 TFGTTYYDSGVGQSSDFGRGYYNSKAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGKHN 448

Query: 121 EYLYYEASAAIPDQLDKQQ 140
           EYLYYE  AA+P+Q D+ Q
Sbjct: 449 EYLYYEVPAAVPEQSDELQ 467

[Close]
BLAST of Chy1G012570 vs. ExPASy TrEMBL
Match: A0A5A7VIP6 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold38G001330 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 2.9e-49
Identity = 101/139 (72.66%), Postives = 115/139 (82.73%), Query Frame = 0 

Query: 1   MENIHYMYDASIVPALVQRRRARVQEPDELKEVDQHMEEVPPVTQT*SETSYVSPLMMIP 60
           MENIHYMYD  IVPA VQRRR  VQEPD+L+EVDQH EEVPP+TQT SE +YVSP+MM+P
Sbjct: 442 MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQSEHNYVSPVMMMP 501

Query: 61  TFVTRYYDSGVGQSSDFET*YYNLEAGPSSSNFGQEYYNLGFDPSSLYMHGHGRRRGEHK 120
           TF T YYDS VGQSSDF   YYN EAG SS++FGQ+YY+LG DPSS YMHGHGR RGEH 
Sbjct: 502 TFGTTYYDSEVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGEHN 561

Query: 121 EYLYYEASAAIPDQLDKQQ 140
           EYLYYE  AA+P+Q ++ Q
Sbjct: 562 EYLYYEVPAAVPEQSNELQ 580

[Close]
BLAST of Chy1G012570 vs. NCBI nr
Match: KAA0051233.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 202 bits (515), Expect = 7.96e-62
Identity = 103/141 (73.05%), Postives = 115/141 (81.56%), Query Frame = 0 

Query: 1   MENIHYMYDASIVPALVQRRRARVQEPDELKEVDQHMEEVPPVTQT*--SETSYVSPLMM 60
           MENIHYMYD  IVPA VQRRR  VQEPD+L+EVDQH EEVPP+TQT   SE +YVSP+MM
Sbjct: 141 MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM 200

Query: 61  IPTFVTRYYDSGVGQSSDFET*YYNLEAGPSSSNFGQEYYNLGFDPSSLYMHGHGRRRGE 120
           +PTF T YYDSGVGQSSDF   YYN EAG SS++FGQ+YY+LG DPSS YMH HGR RGE
Sbjct: 201 MPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHDHGRGRGE 260

Query: 121 HKEYLYYEASAAIPDQLDKQQ 139
           H EYLYYE  AA+P Q D+QQ
Sbjct: 261 HNEYLYYEVPAAVPKQSDEQQ 281

[Close]
BLAST of Chy1G012570 vs. NCBI nr
Match: XP_016900498.1 (PREDICTED: GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo])

HSP 1 Score: 199 bits (507), Expect = 1.09e-61
Identity = 101/141 (71.63%), Postives = 115/141 (81.56%), Query Frame = 0 

Query: 1   MENIHYMYDASIVPALVQRRRARVQEPDELKEVDQHMEEVPPVTQT*--SETSYVSPLMM 60
           MENIHYMYD  IVPA VQRRR  VQE D+L+EVDQH EEVPP+TQT   SE +YVSP+MM
Sbjct: 57  MENIHYMYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM 116

Query: 61  IPTFVTRYYDSGVGQSSDFET*YYNLEAGPSSSNFGQEYYNLGFDPSSLYMHGHGRRRGE 120
           +PTF   YYDSGVGQSSDF   YYN EAG SS++FGQ+YY+LG DPSS YMHGHGR RGE
Sbjct: 117 MPTFGMTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGE 176

Query: 121 HKEYLYYEASAAIPDQLDKQQ 139
           H EYLYY+  AA+P+Q D+QQ
Sbjct: 177 HNEYLYYKVPAAVPEQSDEQQ 197

[Close]
BLAST of Chy1G012570 vs. NCBI nr
Match: TYK18891.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 202 bits (513), Expect = 1.59e-61
Identity = 102/141 (72.34%), Postives = 116/141 (82.27%), Query Frame = 0 

Query: 1   MENIHYMYDASIVPALVQRRRARVQEPDELKEVDQHMEEVPPVTQT*--SETSYVSPLMM 60
           MENIHYMYD  IVPA VQRRR  VQEPD+L+EVDQH EEVPP+TQT   SE +YVSP+MM
Sbjct: 141 MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM 200

Query: 61  IPTFVTRYYDSGVGQSSDFET*YYNLEAGPSSSNFGQEYYNLGFDPSSLYMHGHGRRRGE 120
           +PTF T YYDSGVGQSSDF   YYN EAG SS++FGQ+YY+LG DPSS YMHGHGR RGE
Sbjct: 201 MPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGE 260

Query: 121 HKEYLYYEASAAIPDQLDKQQ 139
           H EYLYYE  AA+P+Q ++ Q
Sbjct: 261 HNEYLYYEVPAAVPEQSNELQ 281

[Close]
BLAST of Chy1G012570 vs. NCBI nr
Match: TYK09816.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 201 bits (512), Expect = 1.75e-61
Identity = 102/141 (72.34%), Postives = 115/141 (81.56%), Query Frame = 0 

Query: 1   MENIHYMYDASIVPALVQRRRARVQEPDELKEVDQHMEEVPPVTQT*--SETSYVSPLMM 60
           +ENIHYMYD SIVPA VQR+R  VQE D+L+EVDQH+EEVPPVTQT   SE SYVSPLMM
Sbjct: 141 IENIHYMYDVSIVPAPVQRKRPLVQELDQLEEVDQHVEEVPPVTQTQTQSEHSYVSPLMM 200

Query: 61  IPTFVTRYYDSGVGQSSDFET*YYNLEAGPSSSNFGQEYYNLGFDPSSLYMHGHGRRRGE 120
           +PTF T YYD GVGQSSDF   YYN EAGPSS++FGQ+YY+LG +PSS YMHGHGR RGE
Sbjct: 201 MPTFGTTYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNPSSSYMHGHGRGRGE 260

Query: 121 HKEYLYYEASAAIPDQLDKQQ 139
           H EYLYYE    +P Q D+QQ
Sbjct: 261 HNEYLYYEVPTTVPKQSDEQQ 281

[Close]
BLAST of Chy1G012570 vs. NCBI nr
Match: XP_008449513.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo])

HSP 1 Score: 199 bits (507), Expect = 2.00e-61
Identity = 101/141 (71.63%), Postives = 115/141 (81.56%), Query Frame = 0 

Query: 1   MENIHYMYDASIVPALVQRRRARVQEPDELKEVDQHMEEVPPVTQT*--SETSYVSPLMM 60
           MENIHYMYD  IVPA VQRRR  VQE D+L+EVDQH EEVPP+TQT   SE +YVSP+MM
Sbjct: 77  MENIHYMYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM 136

Query: 61  IPTFVTRYYDSGVGQSSDFET*YYNLEAGPSSSNFGQEYYNLGFDPSSLYMHGHGRRRGE 120
           +PTF   YYDSGVGQSSDF   YYN EAG SS++FGQ+YY+LG DPSS YMHGHGR RGE
Sbjct: 137 MPTFGMTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGE 196

Query: 121 HKEYLYYEASAAIPDQLDKQQ 139
           H EYLYY+  AA+P+Q D+QQ
Sbjct: 197 HNEYLYYKVPAAVPEQSDEQQ 217

The following BLAST results are available for this feature:
BLAST of Chy1G012570 vs.
Match NameE-valueIdentityDescription
BLAST of Chy1G012570 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UKC78.9e-5174.10Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... [more]
A0A5A7SU333.4e-5073.38Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... [more]
A0A5D3BAB02.2e-4971.94Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... [more]
A0A5A7T5982.2e-4971.94Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... [more]
A0A5A7VIP62.9e-4972.66Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
BLAST of Chy1G012570 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0051233.17.96e-6273.05mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
XP_016900498.11.09e-6171.63PREDICTED: GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumi... [more]
TYK18891.11.59e-6172.34mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
TYK09816.11.75e-6172.34mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
XP_008449513.12.00e-6171.63PREDICTED: mediator of RNA polymerase II transcription subunit 12-like isoform X... [more]
BLAST of Chy1G012570 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy1G012570.1Chy1G012570.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010073 meristem maintenance
molecular_function GO:0008270 zinc ion binding