Chy1G012490 (gene) Cucumber (hystrix) v1

Overview


Name	Chy1G012490
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Cytoplasmic tRNA 2-thiolation protein 1
Location	chrH01: 15467527 .. 15468729 (+)
RNA-Seq Expression	Chy1G012490
Synteny	Chy1G012490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGTATAAATAATGATTGATTTTTTCCCTTATAATCTCCTTTCTCTAAATTTCTACCAAGTATTTGGTTCACACTTTCAGATCGATCCTTTAATGTTTTCACTCCTCCATTTTTCAAAAAAAAAAAAAAAATCTTTTGTTTTTTCAGATTTCAAAGGTTTCAGAAGAGTTTTATATATTTTCTTTAATAGTCTTCCTCAGTCGTAGATTCACAAATTTGCAATAAGCTTAACAAGTGATTTCAATATTAATTGGGGAGGAAATAACTTTAGATAAATTCCAAATTTTTACTTGATGGCTTTGATATATCAAATACTTTAACAAAGTTCATGGAGGATATTGTGTATCCAGATGTCTATTGCTTTTACAGGTTTGCAGACAATGTTTCCATGAGGTCTTTGAGAAGGAGATTCATCAAGTTATTGTGAAGAATTCAGTTGTTCAAACATGGGAAATGCATTCCTGCTGGTGCATCTGGTGGAAAAGGTGAACACTGATTCTTCCTAGTTCTAAAGCACTTGCAAATCATATACTATACCCTTGTGTTCTTATGACTGTTCTGGTTATGGAGATTTTCTTCAAATAAGATTCTTTTTTATGCTAAGTATCTAGAAACATCCTTGTTGAATCCTTTGTTTTGTTTCTTCTCGGCATTGACATCCTTGACAAGTGAATTTCTAAAGGATGACGAGAGATGGTTTTGCTAGCTATTTCCAAAGTCACTTGAAAAATTATTGTAGTCCTTCAAAGCATTTTAAATAGTATGAAAATGAGGCTTAAAAGTGTAAAATTAAAAGTGATACTTTTGTGATTTAGAATGATTTTTGAACAATTTCAAAATTGTTTTTAAACATGCACTTGATATGTTATGTTAATGATGTATGTTCCAAGGTACAAGGTGGTTAAAGTTGGAGCAGGGAGAAATCATATTGATGTGGTCACTGAGGATGAAAATGTAGCTTTGATTGGACCATTGGGTATTTTACACTAAAAATTGAAATGGGTTTAACTCTCAATTTTCCAAAATTTCATTCTATGTTTTGCTTACCCAATTTTGTGTTGAAAAGATACCATTTTTATTTGCTAGATTGTGCTTGTAGGTTTGTGGGTGTCATCAATCTTGAATCTTCCCTTTTCGTAGTTGGCAAGGGAAGTGGAGATGAGGAGAAATGTCTTGAATATCAAGTTGATGATGCTAAG

mRNA sequence

ATGAAGGTTTGCAGACAATGTTTCCATGAGGTCTTTGAGAAGGAGATTCATCAAGTTATTGTGAAGAATTCAGTTGTTCAAACATGGGAAATGCATTCCTGCTGGTGCATCTGGTGGAAAAGGTTTGTGGGTGTCATCAATCTTGAATCTTCCCTTTTCGTAGTTGGCAAGGGAAGTGGAGATGAGGAGAAATGTCTTGAATATCAAGTTGATGATGCTAAG

Coding sequence (CDS)

ATGAAGGTTTGCAGACAATGTTTCCATGAGGTCTTTGAGAAGGAGATTCATCAAGTTATTGTGAAGAATTCAGTTGTTCAAACATGGGAAATGCATTCCTGCTGGTGCATCTGGTGGAAAAGGTTTGTGGGTGTCATCAATCTTGAATCTTCCCTTTTCGTAGTTGGCAAGGGAAGTGGAGATGAGGAGAAATGTCTTGAATATCAAGTTGATGATGCTAAG

Protein sequence

MKVCRQCFHEVFEKEIHQVIVKNSVVQTWEMHSCWCIWWKRFVGVINLESSLFVVGKGSGDEEKCLEYQVDDAK

Homology

[Close]

BLAST of Chy1G012490 vs. ExPASy Swiss-Prot
Match: O64862 (Cytoplasmic tRNA 2-thiolation protein 1 OS=Arabidopsis thaliana OX=3702 GN=NCS6 PE=2 SV=2)

HSP 1 Score: 44.3 bits (103), Expect = 7.0e-04
Identity = 17/29 (58.62%), Postives = 26/29 (89.66%), Query Frame = 0


Query: 2  KVCRQCFHEVFEKEIHQVIVKNSVVQTWE 31
          ++CR+CF+EVFE+EIHQVIV+N + ++ E
Sbjct: 32 QICRECFYEVFEEEIHQVIVQNRLFKSGE 60

[Close]

BLAST of Chy1G012490 vs. NCBI nr
Match: KAF2566594.1 (hypothetical protein F2Q68_00023909 [Brassica cretica])

HSP 1 Score: 45.4 bits (106), Expect = 4.84e-04
Identity = 17/29 (58.62%), Postives = 26/29 (89.66%), Query Frame = 0


Query: 2  KVCRQCFHEVFEKEIHQVIVKNSVVQTWE 30
          ++C++CF+EVFE+EIHQVIVKN + ++ E
Sbjct: 35 QICKECFYEVFEEEIHQVIVKNGLFKSGE 63

[Close]

BLAST of Chy1G012490 vs. NCBI nr
Match: XP_034901904.1 (cytoplasmic tRNA 2-thiolation protein 1 isoform X1 [Populus alba])

HSP 1 Score: 47.4 bits (111), Expect = 7.31e-04
Identity = 19/29 (65.52%), Postives = 25/29 (86.21%), Query Frame = 0


Query: 2  KVCRQCFHEVFEKEIHQVIVKNSVVQTWE 30
          K+CR+CF+EVFE+EIHQVIVKN + +  E
Sbjct: 32 KICRECFYEVFEEEIHQVIVKNQLFKPGE 60

[Close]

BLAST of Chy1G012490 vs. TAIR 10
Match: AT2G44270.1 (repressor of lrx1 )

HSP 1 Score: 44.3 bits (103), Expect = 5.0e-05
Identity = 17/29 (58.62%), Postives = 26/29 (89.66%), Query Frame = 0


Query: 2  KVCRQCFHEVFEKEIHQVIVKNSVVQTWE 31
          ++CR+CF+EVFE+EIHQVIV+N + ++ E
Sbjct: 32 QICRECFYEVFEEEIHQVIVQNRLFKSGE 60

The following BLAST results are available for this feature:

BLAST of Chy1G012490 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O64862	7.0e-04	58.62	Cytoplasmic tRNA 2-thiolation protein 1 OS=Arabidopsis thaliana OX=3702 GN=NCS6 ...	[more]

BLAST of Chy1G012490 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Chy1G012490 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF2566594.1	4.84e-04	58.62	hypothetical protein F2Q68_00023909 [Brassica cretica]	[more]
XP_034901904.1	7.31e-04	65.52	cytoplasmic tRNA 2-thiolation protein 1 isoform X1 [Populus alba]	[more]

BLAST of Chy1G012490 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G44270.1	5.0e-05	58.62	repressor of lrx1	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy1G012490.1	Chy1G012490.1	mRNA