Chy1G012260 (gene) Cucumber (hystrix) v1

Overview


Name	Chy1G012260
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH01: 14621056 .. 14621316 (+)
RNA-Seq Expression	Chy1G012260
Synteny	Chy1G012260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGAGTGCATTACTGGCCAATCCACAAGGAGAGGAAGAAGCACCCAAAGAGGCACACTTGGGAGGGATGCAATACCTCAGTGCCATGAAAACGGGCCCTTCTTCAAAAGAACCCTTGGAGAGGTTTATTGTACGTGGACGCCACACCCAACGACCAGGCTGCCTTAGCATTGCTGGATACAGGTGCAACCAGCAACATCATAGATCTAGAAGAGGCGAAGCAGCTAGGTCTCAGGATCACGAGGAGGGACGACATTGA

mRNA sequence

ATGTTGAGTGCATTACTGGCCAATCCACAAGGAGAGGAAGAAGCACCCAAAGAGGCACACTTGGGAGGGATGCAATACCTCAGTGCCATGAAAACGGGCCCTTCTTCAAAAGAACCCTTGGAGAGGTTTATTGTACGTGGACGCCACACCCAACGACCAGGCTGCCTTAGCATTGCTGGATACAGGTGCAACCAGCAACATCATAGATCTAGAAGAGGCGAAGCAGCTAGGTCTCAGGATCACGAGGAGGGACGACATTGA

Coding sequence (CDS)

ATGTTGAGTGCATTACTGGCCAATCCACAAGGAGAGGAAGAAGCACCCAAAGAGGCACACTTGGGAGGGATGCAATACCTCAGTGCCATGAAAACGGGCCCTTCTTCAAAAGAACCCTTGGAGAGGTTTATTGTACGTGGACGCCACACCCAACGACCAGGCTGCCTTAGCATTGCTGGATACAGGTGCAACCAGCAACATCATAGATCTAGAAGAGGCGAAGCAGCTAGGTCTCAGGATCACGAGGAGGGACGACATTGA

Protein sequence

MLSALLANPQGEEEAPKEAHLGGMQYLSAMKTGPSSKEPLERFIVRGRHTQRPGCLSIAGYRCNQQHHRSRRGEAARSQDHEEGRH*

Homology

[Close]

BLAST of Chy1G012260 vs. NCBI nr
Match: KAE8646027.1 (hypothetical protein Csa_015729, partial [Cucumis sativus])

HSP 1 Score: 55.5 bits (132), Expect = 3.29e-07
Identity = 30/40 (75.00%), Postives = 32/40 (80.00%), Query Frame = 0


Query: 1  MLSALLA--NPQGEEEAPKEAHLGGMQYLSAMKTGPSSKE 38
          MLSAL+A  +   EEEAPKEAHLG MQYL AMK GPSSKE
Sbjct: 2  MLSALVAKLHEGEEEEAPKEAHLGEMQYLDAMKVGPSSKE 41

[Close]

BLAST of Chy1G012260 vs. NCBI nr
Match: KAE8646814.1 (hypothetical protein Csa_005402 [Cucumis sativus])

HSP 1 Score: 49.7 bits (117), Expect = 1.81e-04
Identity = 26/49 (53.06%), Postives = 34/49 (69.39%), Query Frame = 0


Query: 1   MLSALLANPQGEEEA----PKEAHLGGMQYLSAMKTGPSSKEPLERFIV 45
           +LSAL+A     EE     P+EAHLGG+QYL AMK  PSSKEP+ + ++
Sbjct: 106 VLSALMAKLHKREEEEVPIPEEAHLGGIQYLGAMKVVPSSKEPIGKGLL 154

[Close]

BLAST of Chy1G012260 vs. NCBI nr
Match: KAE8637433.1 (hypothetical protein CSA_004611, partial [Cucumis sativus])

HSP 1 Score: 49.7 bits (117), Expect = 1.83e-04
Identity = 26/49 (53.06%), Postives = 34/49 (69.39%), Query Frame = 0


Query: 1   MLSALLANPQGEEEA----PKEAHLGGMQYLSAMKTGPSSKEPLERFIV 45
           +LSAL+A     EE     P+EAHLGG+QYL AMK  PSSKEP+ + ++
Sbjct: 213 VLSALMAKLHKREEEEVPIPEEAHLGGIQYLGAMKVVPSSKEPIGKGLL 261

The following BLAST results are available for this feature:

BLAST of Chy1G012260 vs.


Match Name	E-value	Identity	Description

BLAST of Chy1G012260 vs.


Match Name	E-value	Identity	Description

BLAST of Chy1G012260 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8646027.1	3.29e-07	75.00	hypothetical protein Csa_015729, partial [Cucumis sativus]	[more]
KAE8646814.1	1.81e-04	53.06	hypothetical protein Csa_005402 [Cucumis sativus]	[more]
KAE8637433.1	1.83e-04	53.06	hypothetical protein CSA_004611, partial [Cucumis sativus]	[more]

BLAST of Chy1G012260 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..86
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy1G012260.1	Chy1G012260.1	mRNA