Chy1G011600 (gene) Cucumber (hystrix) v1

Overview


Name	Chy1G011600
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	PMD domain-containing protein
Location	chrH01: 13510529 .. 13511333 (-)
RNA-Seq Expression	Chy1G011600
Synteny	Chy1G011600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCCTACCCTCGAGAAGGATGTGGCGGAGCATAAAGAGGAGAGTGACAACAGCAAAAGTGATCGTCATTGGAAAAGACCTTTGAAGAAAGCGAAGGTGTCAGGTGATGACTCTGGCGAAAGGGGCTCGAGTGCTATGGGAATTCTTGATGTCCCACCACTAGTTTGCATATTTTCCTTCTTTAATAATTTTCTTTAATTGTTAATCTTCTTCATGAATGATTTATCCATTGCTTATTTTTGCAGTCACCTTTGGATAATCATCTTGAAGGACTCATAGATGTAGACAATGATGAATCACTAACTAGTCCTCATATGACTGATACGACTATTGAGGAAGTTGGTATTTCGAAGACACCAGCTGCAAAACCAATCGAACTATCTTTACGTCCCTCTGCTCTTCTCGAGGAGATTCGTCGAGGCAAGATGAAAGTGGGCGGCCAAGACATCGAGAATCCTCCCTCTAGAGGAGGTGCCTGTCCTACAGTGCGAGTCCTACAGTGCCTTCAACGAAGGCTACATCCATGCATGCTCCTCTCAAGATTTCCGAGCCGCCTCTAGGCACCTCTATGAAACAGGCAGCAGAACACCCTGAGCCTTCTCAGTGGGTTGTTGAAAATGTAGTTTCAAATTTCTTTCAGAAAACAGCCATGTGTATGTGGAGGGACATTCAAGACAAGATCATACGCACCCTTTTTGAATATATCTCAAGACTTAGGCCAGAAATAGCAATAGTTCTCTCAGGAATTGCGAAGATTCATGCAGACGACTTGACTCCTCTTGAAGAATACTTGAATAGTTAT

mRNA sequence

ATGGCTCCTACCCTCGAGAAGGATGTGGCGGAGCATAAAGAGGAGAGTGACAACAGCAAAAGTGATCGTCATTGGAAAAGACCTTTGAAGAAAGCGAAGACACCAGCTGCAAAACCAATCGAACTATCTTTACGTCCCTCTGCTCTTCTCGAGGAGATTCGTCGAGGCAAGATGAAAGTGGGCGGCCAAGACATCGAGAATCCTCCCTCTAGAGGAGGTGCCTGTCCTACAGTGCGAGTCCTACAGTGCCTTCAACGAAGGCTACATCCATGCATGCTCCTCTCAAGATTTCCGAGCCGCCTCTAGGCACCTCTATGAAACAGGCAGCAGAACACCCTGAGCCTTCTCAACTTAGGCCAGAAATAGCAATAGTTCTCTCAGGAATTGCGAAGATTCATGCAGACGACTTGACTCCTCTTGAAGAATACTTGAATAGTTAT

Coding sequence (CDS)

ATGGCTCCTACCCTCGAGAAGGATGTGGCGGAGCATAAAGAGGAGAGTGACAACAGCAAAAGTGATCGTCATTGGAAAAGACCTTTGAAGAAAGCGAAGACACCAGCTGCAAAACCAATCGAACTATCTTTACGTCCCTCTGCTCTTCTCGAGGAGATTCGTCGAGGCAAGATGAAAGTGGGCGGCCAAGACATCGAGAATCCTCCCTCTAGAGGAGGTGCCTGTCCTACAGTGCGAGTCCTACAGTGCCTTCAACGAAGGCTACATCCATGCATGCTCCTCTCAAGATTTCCGAGCCGCCTCTAGGCACCTCTATGAAACAGGCAGCAGAACACCCTGAGCCTTCTCAACTTAGGCCAGAAATAGCAATAGTTCTCTCAGGAATTGCGAAGATTCATGCAGACGACTTGACTCCTCTTGAAGAATACTTGAATAGTTAT

Protein sequence

MAPTLEKDVAEHKEESDNSKSDRHWKRPLKKAKTPAAKPIELSLRPSALLEEIRRGKMKVGGQDIENPPSRGGACPTVRVLQCLQRRLHPCMLLSRFPSRL*APL*NRQQNTLSLLNLGQK*Q*FSQELRRFMQTT*LLLKNT*IVX

Homology

[Close]

BLAST of Chy1G011600 vs. ExPASy TrEMBL
Match: A0A0A0KQU9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G264300 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 2.4e-30
Identity = 72/98 (73.47%), Postives = 83/98 (84.69%), Query Frame = 0


Query: 1  MAPTLEKDVAEHKEESDNSKSDRHWKRPLKKAKTPAAKPIELSLRPSALLEEIRRGKMKV 60
          MAPTLEKDVAEHK+ESDN+KSDRHWKRPLKKAKTPAAKP+++SLRPSALLEEIRRGKMKV
Sbjct: 1  MAPTLEKDVAEHKDESDNNKSDRHWKRPLKKAKTPAAKPVKVSLRPSALLEEIRRGKMKV 60

Query: 61 GGQDIENPPSRGGACPTVRVLQCLQRRLHPCMLLSRFP 99
          GG+DIEN PSRGGA P V  ++     +H  + +S  P
Sbjct: 61 GGKDIENLPSRGGAYPIVSSMKATS--MHAPLKISEPP 96

[Close]

BLAST of Chy1G011600 vs. ExPASy TrEMBL
Match: A0A5D3E1Q2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3607G00180 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 5.1e-17
Identity = 52/98 (53.06%), Postives = 63/98 (64.29%), Query Frame = 0


Query: 1  MAPTLEKDVAEHKEESDNSKSDRHWKRPLKKAK----------------------TPAAK 60
          +A TLE+++ EHK+ESD+SKSD HWK+PLKKAK                      TP +K
Sbjct: 2  IAATLEEEIKEHKDESDSSKSDHHWKKPLKKAKVSGDDLDKKGSSALGVPNVPPLTPVSK 61

Query: 61 PIELSLRPSALLEEIRRGKMKVGGQDIENPPSRGGACP 77
          P E  LRPSALLEEI R KM VGG+ I +PPS+G ACP
Sbjct: 62 PTEQFLRPSALLEEIHRSKMTVGGKSIGSPPSKGDACP 99

[Close]

BLAST of Chy1G011600 vs. ExPASy TrEMBL
Match: A0A5D3C3D7 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G001360 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 6.7e-17
Identity = 56/114 (49.12%), Postives = 64/114 (56.14%), Query Frame = 0


Query: 1   MAPTLEKDVAEHKEESDNSKSDRHWKRPLKKA---------------------------- 60
           MAP LE++V EHK+ESD+SKSDRHWKRPLKKA                            
Sbjct: 626 MAPNLEEEVKEHKDESDSSKSDRHWKRPLKKAKVSGDHPDWFARLIEPDSDESLTGPHVV 685

Query: 61  ----------KTPAAKPIELSLRPSALLEEIRRGKMKVGGQDIENPPSRGGACP 77
                     KTP  KP E SLRPSAL EEIRRGKM VGG+D+E+  S+ G CP
Sbjct: 686 DSAFEEVGTSKTPVNKPAEQSLRPSALFEEIRRGKMTVGGKDLESHSSKEGVCP 739

[Close]

BLAST of Chy1G011600 vs. ExPASy TrEMBL
Match: A0A5A7SQC9 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold506G00140 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.5e-16
Identity = 59/134 (44.03%), Postives = 67/134 (50.00%), Query Frame = 0


Query: 1   MAPTLEKDVAEHKEESDNSKSDRHWKRPLKKAK--------------------------- 60
           MAP LE++V EHK+ESD+SKSDRHWKRPLKKAK                           
Sbjct: 258 MAPNLEEEVKEHKDESDSSKSDRHWKRPLKKAKVSGDHPDGRGLSALEVPDVPPLSPLND 317

Query: 61  -------------------------------TPAAKPIELSLRPSALLEEIRRGKMKVGG 77
                                          TP  KP E SLRPSALLEEIRRGKM VGG
Sbjct: 318 HLEGLIEPDSDESLTGPHAVDSAFEEVGTSRTPVNKPTEQSLRPSALLEEIRRGKMTVGG 377

[Close]

BLAST of Chy1G011600 vs. ExPASy TrEMBL
Match: A0A5A7UVX0 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold970G00390 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 3.3e-16
Identity = 59/134 (44.03%), Postives = 67/134 (50.00%), Query Frame = 0


Query: 1   MAPTLEKDVAEHKEESDNSKSDRHWKRPLKKA---------------------------- 60
           MAP LE++V EHK+ESD+SKSDRHWKRPLKKA                            
Sbjct: 264 MAPNLEEEVNEHKDESDSSKSDRHWKRPLKKAKVSGDNPDGRGLSALIVPDVPPLSPLND 323

Query: 61  ------------------------------KTPAAKPIELSLRPSALLEEIRRGKMKVGG 77
                                         KTP  KP E SLRPSALLEEIRRGKM VGG
Sbjct: 324 HLEGLIALDSDESLMGPHAVDSAFEEVGTSKTPVNKPTEQSLRPSALLEEIRRGKMIVGG 383

[Close]

BLAST of Chy1G011600 vs. NCBI nr
Match: KAE8648075.1 (hypothetical protein Csa_018860, partial [Cucumis sativus])

HSP 1 Score: 141 bits (356), Expect = 4.72e-40
Identity = 72/98 (73.47%), Postives = 83/98 (84.69%), Query Frame = 0


Query: 1  MAPTLEKDVAEHKEESDNSKSDRHWKRPLKKAKTPAAKPIELSLRPSALLEEIRRGKMKV 60
          MAPTLEKDVAEHK+ESDN+KSDRHWKRPLKKAKTPAAKP+++SLRPSALLEEIRRGKMKV
Sbjct: 1  MAPTLEKDVAEHKDESDNNKSDRHWKRPLKKAKTPAAKPVKVSLRPSALLEEIRRGKMKV 60

Query: 61 GGQDIENPPSRGGACPTVRVLQCLQRRLHPCMLLSRFP 98
          GG+DIEN PSRGGA P V  ++     +H  + +S  P
Sbjct: 61 GGKDIENLPSRGGAYPIVSSMKATS--MHAPLKISEPP 96

[Close]

BLAST of Chy1G011600 vs. NCBI nr
Match: TYK29708.1 (hypothetical protein E5676_scaffold3607G00180 [Cucumis melo var. makuwa])

HSP 1 Score: 97.4 bits (241), Expect = 3.89e-21
Identity = 52/98 (53.06%), Postives = 63/98 (64.29%), Query Frame = 0


Query: 1  MAPTLEKDVAEHKEESDNSKSDRHWKRPLKKAK----------------------TPAAK 60
          +A TLE+++ EHK+ESD+SKSD HWK+PLKKAK                      TP +K
Sbjct: 2  IAATLEEEIKEHKDESDSSKSDHHWKKPLKKAKVSGDDLDKKGSSALGVPNVPPLTPVSK 61

Query: 61 PIELSLRPSALLEEIRRGKMKVGGQDIENPPSRGGACP 76
          P E  LRPSALLEEI R KM VGG+ I +PPS+G ACP
Sbjct: 62 PTEQFLRPSALLEEIHRSKMTVGGKSIGSPPSKGDACP 99

[Close]

BLAST of Chy1G011600 vs. NCBI nr
Match: KAA0050984.1 (hypothetical protein E6C27_scaffold3608G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 92.4 bits (228), Expect = 2.42e-20
Identity = 51/98 (52.04%), Postives = 62/98 (63.27%), Query Frame = 0


Query: 1  MAPTLEKDVAEHKEESDNSKSDRHWKRPLKKAK----------------------TPAAK 60
          M   LE+++ EHK+ES++ KSDRHWKRPLKKAK                      TP +K
Sbjct: 1  MDAALEEEIKEHKDESESIKSDRHWKRPLKKAKVSSDDLDGRVSSALGVPDVPPLTPVSK 60

Query: 61 PIELSLRPSALLEEIRRGKMKVGGQDIENPPSRGGACP 76
          P + SLRPS LLEEIRRGKM V G+DI +P S+G ACP
Sbjct: 61 PAKQSLRPSTLLEEIRRGKMIVVGKDIGSPSSKGDACP 98

[Close]

BLAST of Chy1G011600 vs. NCBI nr
Match: TYK06433.1 (hypothetical protein E5676_scaffold163G001360 [Cucumis melo var. makuwa])

HSP 1 Score: 97.1 bits (240), Expect = 4.13e-20
Identity = 56/114 (49.12%), Postives = 64/114 (56.14%), Query Frame = 0


Query: 1   MAPTLEKDVAEHKEESDNSKSDRHWKRPLKKAK--------------------------- 60
           MAP LE++V EHK+ESD+SKSDRHWKRPLKKAK                           
Sbjct: 626 MAPNLEEEVKEHKDESDSSKSDRHWKRPLKKAKVSGDHPDWFARLIEPDSDESLTGPHVV 685

Query: 61  -----------TPAAKPIELSLRPSALLEEIRRGKMKVGGQDIENPPSRGGACP 76
                      TP  KP E SLRPSAL EEIRRGKM VGG+D+E+  S+ G CP
Sbjct: 686 DSAFEEVGTSKTPVNKPAEQSLRPSALFEEIRRGKMTVGGKDLESHSSKEGVCP 739

[Close]

BLAST of Chy1G011600 vs. NCBI nr
Match: KAA0031751.1 (hypothetical protein E6C27_scaffold506G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 95.9 bits (237), Expect = 9.82e-20
Identity = 59/134 (44.03%), Postives = 67/134 (50.00%), Query Frame = 0


Query: 1   MAPTLEKDVAEHKEESDNSKSDRHWKRPLKKAK--------------------------- 60
           MAP LE++V EHK+ESD+SKSDRHWKRPLKKAK                           
Sbjct: 258 MAPNLEEEVKEHKDESDSSKSDRHWKRPLKKAKVSGDHPDGRGLSALEVPDVPPLSPLND 317

Query: 61  -------------------------------TPAAKPIELSLRPSALLEEIRRGKMKVGG 76
                                          TP  KP E SLRPSALLEEIRRGKM VGG
Sbjct: 318 HLEGLIEPDSDESLTGPHAVDSAFEEVGTSRTPVNKPTEQSLRPSALLEEIRRGKMTVGG 377

The following BLAST results are available for this feature:

BLAST of Chy1G011600 vs.


Match Name	E-value	Identity	Description

BLAST of Chy1G011600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQU9	2.4e-30	73.47	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G264300 PE=4 SV=1	[more]
A0A5D3E1Q2	5.1e-17	53.06	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3C3D7	6.7e-17	49.12	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5A7SQC9	1.5e-16	44.03	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7UVX0	3.3e-16	44.03	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]

BLAST of Chy1G011600 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8648075.1	4.72e-40	73.47	hypothetical protein Csa_018860, partial [Cucumis sativus]	[more]
TYK29708.1	3.89e-21	53.06	hypothetical protein E5676_scaffold3607G00180 [Cucumis melo var. makuwa]	[more]
KAA0050984.1	2.42e-20	52.04	hypothetical protein E6C27_scaffold3608G00010 [Cucumis melo var. makuwa]	[more]
TYK06433.1	4.13e-20	49.12	hypothetical protein E5676_scaffold163G001360 [Cucumis melo var. makuwa]	[more]
KAA0031751.1	9.82e-20	44.03	hypothetical protein E6C27_scaffold506G00140 [Cucumis melo var. makuwa]	[more]

BLAST of Chy1G011600 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..41

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy1G011600.1	Chy1G011600.1	mRNA