Chy1G011530 (gene) Cucumber (hystrix) v1

Overview
NameChy1G011530
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
Descriptionprotein FAR-RED ELONGATED HYPOCOTYL 3-like
LocationchrH01: 13478946 .. 13479528 (-)
RNA-Seq ExpressionChy1G011530
SyntenyChy1G011530
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATAGGTTTGAGCTACATGTGGAAAGTTAGGGCTATTAGAGTGAAAGATTCTGATATGTTAAAGTTTCAAAGTACGTTAGTGGACACATATGACAATTTTTTTTTAATGAAAACTAGGATCATAAGCAAGCTTAAAGTTGAGTTATAGTTGAATTAATTAATTCAAAGTACCAAGATGTTAGTCGTGGTTATAGGTCCAAGGAAATCATTCAAGACTTTTGTAAGAAGTATGAAGTGGATATTGCTTATGAAAAGGCATGGAGGGCCTGAGAAGTTGCACTGTCTATAGTACGAGGGTCACCTGGAAAATCTTTCAGCTTGGTACTCAGTATGAGTTGGAAACCGAGTCGGATGGCCATTTTAAATAAGTGTATATGACATTTGAAGTTGTCATTAGAGGTTTCTTGAAATGCATTCGACTAGTAATTGTTGTTGATGTTGAACATTGCAAGAGAAAGTATAAGAGTGTTATGCTTGTAGCGGTGTTAGTTGATGTTAATAAGAAAATATACTCACTTGCTCCGAGATTAGGGGTAAGAACAATGATGATTTGTGGACGTGTTCCATGAGAAGGTTGTAA

mRNA sequence

ATGGATAGGTTTGAGCTACATGTGGAAATTGAATTAATTAATTCAAAGTACCAAGATGTTAGTCGTGGTTATAGGTCCAAGGAAATCATTCAAGACTTTTGTAAGAAGTATGAAGTGGATATTGCTTATGAAAAGGCATGGAGGGCCTGAGAAGTTGCACTGTCTATATATGAGTTGGAAACCGAGTCGGATGGCCATTTTAAATAAGTGTATATGACATTTGAAGTTGTCATTAGAGGTTTCTTGAAATGCATTCGACTAGTAATTGTTGTTGATGTTGAACATTGCAAGAGAAAGTATAAGAGTGTTATGCTTGTAGCGGTGTTAGTTGATGTTAATAAGAAAATATACTCACTTGCTCCGAGATTAGGGGTAAGAACAATGATGATTTGTGGACGTGTTCCATGAGAAGGTTGTAA

Coding sequence (CDS)

ATGGATAGGTTTGAGCTACATGTGGAAATTGAATTAATTAATTCAAAGTACCAAGATGTTAGTCGTGGTTATAGGTCCAAGGAAATCATTCAAGACTTTTGTAAGAAGTATGAAGTGGATATTGCTTATGAAAAGGCATGGAGGGCCTGAGAAGTTGCACTGTCTATATATGAGTTGGAAACCGAGTCGGATGGCCATTTTAAATAAGTGTATATGACATTTGAAGTTGTCATTAGAGGTTTCTTGAAATGCATTCGACTAGTAATTGTTGTTGATGTTGAACATTGCAAGAGAAAGTATAAGAGTGTTATGCTTGTAGCGGTGTTAGTTGATGTTAATAAGAAAATATACTCACTTGCTCCGAGATTAGGGGTAAGAACAATGATGATTTGTGGACGTGTTCCATGAGAAGGTTGTAA

Protein sequence

MDRFELHVEIELINSKYQDVSRGYRSKEIIQDFCKKYEVDIAYEKAWRA*EVALSIYELETESDGHFK*VYMTFEVVIRGFLKCIRLVIVVDVEHCKRKYKSVMLVAVLVDVNKKIYSLAPRLGVRTMMICGRVP*EGCX
Homology
BLAST of Chy1G011530 vs. ExPASy TrEMBL
Match: A0A0A0K523 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G098770 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 2.9e-46
Identity = 103/122 (84.43%), Postives = 108/122 (88.52%), Query Frame = 0

Query: 1   MDRFELHVEIELINSKYQDVSRGYRSKEIIQDFCKKYEVDIAYEKAWRA*EVALSIYELE 60
           MDRFELHVEIE INSKYQDVSRGYRS EIIQDFCK+Y+VDIAYE AWR  EVAL IYELE
Sbjct: 1   MDRFELHVEIEFINSKYQDVSRGYRSTEIIQDFCKEYKVDIAYENAWRVWEVALCIYELE 60

Query: 61  TESDGHFK*VYMTFEVVIRGFLKCIRLVIVVDVEHCKRKYKSVMLVAVLVDVNKKIYSLA 120
           TES+ HFK +YMTFEVVI+ FLK IRLVIVV VEHCKRKYK VMLVAVLVD NKKIYSLA
Sbjct: 61  TESNDHFKYMYMTFEVVIKCFLKYIRLVIVV-VEHCKRKYKGVMLVAVLVDANKKIYSLA 120

Query: 121 PR 123
            R
Sbjct: 121 LR 121

BLAST of Chy1G011530 vs. ExPASy TrEMBL
Match: A0A6J1DL12 (uncharacterized protein LOC111022077 OS=Momordica charantia OX=3673 GN=LOC111022077 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 2.4e-16
Identity = 57/137 (41.61%), Postives = 75/137 (54.74%), Query Frame = 0

Query: 11  ELINSKYQDVSRGYRSKEIIQDFCKKYEVDIAYEKAWRA*EVAL---------------- 70
           +L+ +  +DVSR YR K+I+ D  K+Y V+I YEKAWRA EVAL                
Sbjct: 214 QLLKANLEDVSRLYRPKDIMTDMRKQYGVNIRYEKAWRAKEVALNILVGSPKESYNCLRR 273

Query: 71  -----------SIYELETESDGHFK*VYMTFEVVIRGFLKCIRLVIVVDVEHCKRKYKSV 121
                      +I+E+E E D +FK  +M     IRGF  CIR V+V+D  H K KYK V
Sbjct: 274 YEEALKVVNTGTIFEMELEEDKYFKYAFMALGCCIRGFSSCIRPVLVIDGAHLKGKYKGV 333

BLAST of Chy1G011530 vs. ExPASy TrEMBL
Match: A0A6J1DG46 (uncharacterized protein LOC111020756 OS=Momordica charantia OX=3673 GN=LOC111020756 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 3.2e-16
Identity = 57/136 (41.91%), Postives = 77/136 (56.62%), Query Frame = 0

Query: 12  LINSKYQDVSRGYRSKEIIQDFCKKYEVDIAYEKAWRA*EVAL----------------- 71
           L+  K+ DVSR YR K+IIQD  K+Y V+++Y++AWR+ E AL                 
Sbjct: 72  LVQEKFTDVSRTYRPKDIIQDMRKEYGVNLSYDRAWRSSEEALRLIRGDLASSYGLLAAY 131

Query: 72  ----------SIYELETESDGHFK*VYMTFEVVIRGFLKCIRLVIVVDVEHCKRKYKSVM 121
                     +I+ELE E   +FK V+MT    IRGFL CIR V+VVD  H K K++ V+
Sbjct: 132 GEALKIMNPGTIFELELEGGKYFKYVFMTLGQSIRGFLGCIRPVLVVDRAHLKGKFRGVL 191

BLAST of Chy1G011530 vs. ExPASy TrEMBL
Match: A0A6J1DLL7 (protein FAR1-RELATED SEQUENCE 4-like OS=Momordica charantia OX=3673 GN=LOC111022068 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 5.4e-16
Identity = 55/136 (40.44%), Postives = 77/136 (56.62%), Query Frame = 0

Query: 12  LINSKYQDVSRGYRSKEIIQDFCKKYEVDIAYEKAWRA*EVAL----------------- 71
           L+ SK+ DVSR YR K+I+QD  ++Y V+++Y+KAWR+ E AL                 
Sbjct: 25  LVQSKFTDVSRTYRPKDIMQDIREEYGVNMSYDKAWRSSEEALRLIRGDPASSYGLLPAY 84

Query: 72  ----------SIYELETESDGHFK*VYMTFEVVIRGFLKCIRLVIVVDVEHCKRKYKSVM 121
                     +I+ELE +   +FK V+M     IRGF+ CIR V+V+D  H K KY  V+
Sbjct: 85  GEAVKIMNPGTIFELELDDSKYFKYVFMAMGQSIRGFMCCIRPVLVIDGAHLKGKYGGVL 144

BLAST of Chy1G011530 vs. ExPASy TrEMBL
Match: A0A6J1DTG5 (uncharacterized protein LOC111023843 OS=Momordica charantia OX=3673 GN=LOC111023843 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 7.1e-16
Identity = 56/136 (41.18%), Postives = 76/136 (55.88%), Query Frame = 0

Query: 12  LINSKYQDVSRGYRSKEIIQDFCKKYEVDIAYEKAWRA*EVAL----------------- 71
           L+  K+ DVSR YR K+IIQD  K+Y V+++Y++AWR+ E AL                 
Sbjct: 218 LVQEKFTDVSRTYRPKDIIQDMRKEYGVNLSYDRAWRSSEEALRLIRGDPASSYGLLPAY 277

Query: 72  ----------SIYELETESDGHFK*VYMTFEVVIRGFLKCIRLVIVVDVEHCKRKYKSVM 121
                     +I+ELE E   +FK V+MT    IRGFL CIR V+VVD  H K K++ V+
Sbjct: 278 GKALKIMNPGTIFELELEGGKYFKYVFMTLGQSIRGFLDCIRPVLVVDGAHLKGKFRGVL 337

BLAST of Chy1G011530 vs. NCBI nr
Match: KGN44009.1 (hypothetical protein Csa_018207 [Cucumis sativus])

HSP 1 Score: 194 bits (492), Expect = 6.80e-61
Identity = 103/122 (84.43%), Postives = 108/122 (88.52%), Query Frame = 0

Query: 1   MDRFELHVEIELINSKYQDVSRGYRSKEIIQDFCKKYEVDIAYEKAWRA*EVALSIYELE 60
           MDRFELHVEIE INSKYQDVSRGYRS EIIQDFCK+Y+VDIAYE AWR  EVAL IYELE
Sbjct: 1   MDRFELHVEIEFINSKYQDVSRGYRSTEIIQDFCKEYKVDIAYENAWRVWEVALCIYELE 60

Query: 61  TESDGHFK*VYMTFEVVIRGFLKCIRLVIVVDVEHCKRKYKSVMLVAVLVDVNKKIYSLA 120
           TES+ HFK +YMTFEVVI+ FLK IRLVIVV VEHCKRKYK VMLVAVLVD NKKIYSLA
Sbjct: 61  TESNDHFKYMYMTFEVVIKCFLKYIRLVIVV-VEHCKRKYKGVMLVAVLVDANKKIYSLA 120

Query: 121 PR 122
            R
Sbjct: 121 LR 121

BLAST of Chy1G011530 vs. NCBI nr
Match: XP_022153200.1 (uncharacterized protein LOC111020756 [Momordica charantia])

HSP 1 Score: 94.4 bits (233), Expect = 9.06e-21
Identity = 57/136 (41.91%), Postives = 77/136 (56.62%), Query Frame = 0

Query: 12  LINSKYQDVSRGYRSKEIIQDFCKKYEVDIAYEKAWRA*EVAL----------------- 71
           L+  K+ DVSR YR K+IIQD  K+Y V+++Y++AWR+ E AL                 
Sbjct: 72  LVQEKFTDVSRTYRPKDIIQDMRKEYGVNLSYDRAWRSSEEALRLIRGDLASSYGLLAAY 131

Query: 72  ----------SIYELETESDGHFK*VYMTFEVVIRGFLKCIRLVIVVDVEHCKRKYKSVM 120
                     +I+ELE E   +FK V+MT    IRGFL CIR V+VVD  H K K++ V+
Sbjct: 132 GEALKIMNPGTIFELELEGGKYFKYVFMTLGQSIRGFLGCIRPVLVVDRAHLKGKFRGVL 191

BLAST of Chy1G011530 vs. NCBI nr
Match: XP_022154923.1 (protein FAR1-RELATED SEQUENCE 4-like [Momordica charantia])

HSP 1 Score: 93.6 bits (231), Expect = 1.08e-19
Identity = 55/136 (40.44%), Postives = 77/136 (56.62%), Query Frame = 0

Query: 12  LINSKYQDVSRGYRSKEIIQDFCKKYEVDIAYEKAWRA*EVAL----------------- 71
           L+ SK+ DVSR YR K+I+QD  ++Y V+++Y+KAWR+ E AL                 
Sbjct: 25  LVQSKFTDVSRTYRPKDIMQDIREEYGVNMSYDKAWRSSEEALRLIRGDPASSYGLLPAY 84

Query: 72  ----------SIYELETESDGHFK*VYMTFEVVIRGFLKCIRLVIVVDVEHCKRKYKSVM 120
                     +I+ELE +   +FK V+M     IRGF+ CIR V+V+D  H K KY  V+
Sbjct: 85  GEAVKIMNPGTIFELELDDSKYFKYVFMAMGQSIRGFMCCIRPVLVIDGAHLKGKYGGVL 144

BLAST of Chy1G011530 vs. NCBI nr
Match: XP_022154930.1 (uncharacterized protein LOC111022077 [Momordica charantia])

HSP 1 Score: 94.7 bits (234), Expect = 1.98e-19
Identity = 57/137 (41.61%), Postives = 75/137 (54.74%), Query Frame = 0

Query: 11  ELINSKYQDVSRGYRSKEIIQDFCKKYEVDIAYEKAWRA*EVALSI-------------- 70
           +L+ +  +DVSR YR K+I+ D  K+Y V+I YEKAWRA EVAL+I              
Sbjct: 214 QLLKANLEDVSRLYRPKDIMTDMRKQYGVNIRYEKAWRAKEVALNILVGSPKESYNCLRR 273

Query: 71  -------------YELETESDGHFK*VYMTFEVVIRGFLKCIRLVIVVDVEHCKRKYKSV 120
                        +E+E E D +FK  +M     IRGF  CIR V+V+D  H K KYK V
Sbjct: 274 YEEALKVVNTGTIFEMELEEDKYFKYAFMALGCCIRGFSSCIRPVLVIDGAHLKGKYKGV 333

BLAST of Chy1G011530 vs. NCBI nr
Match: XP_022157017.1 (uncharacterized protein LOC111023843 [Momordica charantia])

HSP 1 Score: 93.2 bits (230), Expect = 4.00e-19
Identity = 56/136 (41.18%), Postives = 76/136 (55.88%), Query Frame = 0

Query: 12  LINSKYQDVSRGYRSKEIIQDFCKKYEVDIAYEKAWRA*EVAL----------------- 71
           L+  K+ DVSR YR K+IIQD  K+Y V+++Y++AWR+ E AL                 
Sbjct: 218 LVQEKFTDVSRTYRPKDIIQDMRKEYGVNLSYDRAWRSSEEALRLIRGDPASSYGLLPAY 277

Query: 72  ----------SIYELETESDGHFK*VYMTFEVVIRGFLKCIRLVIVVDVEHCKRKYKSVM 120
                     +I+ELE E   +FK V+MT    IRGFL CIR V+VVD  H K K++ V+
Sbjct: 278 GKALKIMNPGTIFELELEGGKYFKYVFMTLGQSIRGFLDCIRPVLVVDGAHLKGKFRGVL 337

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K5232.9e-4684.43Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G098770 PE=4 SV=1[more]
A0A6J1DL122.4e-1641.61uncharacterized protein LOC111022077 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A6J1DG463.2e-1641.91uncharacterized protein LOC111020756 OS=Momordica charantia OX=3673 GN=LOC111020... [more]
A0A6J1DLL75.4e-1640.44protein FAR1-RELATED SEQUENCE 4-like OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A6J1DTG57.1e-1641.18uncharacterized protein LOC111023843 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
Match NameE-valueIdentityDescription
KGN44009.16.80e-6184.43hypothetical protein Csa_018207 [Cucumis sativus][more]
XP_022153200.19.06e-2141.91uncharacterized protein LOC111020756 [Momordica charantia][more]
XP_022154923.11.08e-1940.44protein FAR1-RELATED SEQUENCE 4-like [Momordica charantia][more]
XP_022154930.11.98e-1941.61uncharacterized protein LOC111022077 [Momordica charantia][more]
XP_022157017.14.00e-1941.18uncharacterized protein LOC111023843 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy1G011530.1Chy1G011530.1mRNA