Chy1G010880 (gene) Cucumber (hystrix) v1

Overview


Name	Chy1G010880
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	ABC transporter C family member 3
Location	chrH01: 12307881 .. 12309435 (+)
RNA-Seq Expression	Chy1G010880
Synteny	Chy1G010880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAGTTGTCTCAAAACAGAAGATCAAGTTGCAGACATTGTAACTAAACCGTTGCCTACTTGCAAGTTTGATTTTCTAAGGTCAAAACTTGGTGTTTGTAAACCATAAAGCAAGGAAGAGTGTTAAGAAAATGCTTTAGGATTGATTTCTTGTTATTTTGTTTATGTCCAAGTTTGTTCCTATTTTTTAGGAATTAGTTATTTCAATATTCATGATTTGTAATCATGGAGAAAGTTTAGGGTCATGTTATTAGTGGGTAGTTATTTTTAAGACTTTTAATATTGTAATTTTTGCTTTGAATGTATGTATCTGCATTTTTGTGTCTTCAATTTACTGTTGTAATCCTCATTTTAGAAAACAACAATCTGTTTCACTTAATCTATTTTTTACAATCATCGAAGAACTTTATCTTATAACTCTATACCCCAAACTTAATTACTAACTTCAACTTATTAACTTCACACAATGGGTGAAACGCTCCTAAAGCTTCTATAACTATATACTTACCTTAAATTGTGTTTTTGTTGCATAGCAATATTATATTCCATCAGCACGAGAGCTATCACGGTTGATAGGAGTATTCAAGGCTCCAGTGATACAACTTTTCTCCGAGACAATTTCTGGATCAACTACTATAAGGAGCTTCGAGCAAGAGTCGAGATTCAAGGATGCTAATATGAAATTGATTGATGCGTACTCTCGCCTCAGGTTTCACAATGCTACAGCAATGGAATGGCTTTGCTTTCGTCGCAATTTATTGTCTTCCATTGCATTTGCCTCGTTTTTAGTTTTCCAGATATCCATCCCTTTGGGAGTCATTGATCCAGGTACTTTTTCATGTTAATCCATCTTTAAACAATGATTTTCAAGTTTTTTATCTCTACATGCCTAACTCCTTTTACTGTCTACACTGAAGACATTGCTGGTTTGTCAGTAATCTATGGACTTAACCTCAATATGTTTCAAACTTGGCTAATATGGAACCTTTGCAATATGGAGAACAAAATGATATCAGTTGAGAGCATATTTCAAAATACTTCTATCCCAAGTGAGCCATCTGTAGTTATGGAAGAAATTTGACCAGACAGAAATTGGCCATCATTAAGAAAAATTGAACTTCATAACCTGCAGGTACTTTCAATCCTTTCAATATCAATTGATGCCAACAGATTCAAAATCTGATTTTTGTGATTTATTTAGAGCTTTTACTAAGTAATGTATATCATGTAGGTTCATTATGCACCACAACTCCTGCTTGTGTTGTGAGGTATTACATGTATCCAAGAGGAAAGAAAACAAGCATTGTTGGAAGAACAGGATGCGGCAAATCAACTTTAATACAAACACTTTTTTGGATAATTGATCCCGTAGCAGATCACATTGTGATAAATAACACTAACATAACCACAATTGGACTTATGATTTGCGATCTAGACTCAACATCGCCCCTCAAGATCCTACAATGTTTGAAGGCATCGTGCAGAGCAATCTTGATCCCCTTGAAGAATATGCAGATGAAGACATTTGGGAGATAACATGTTTCCTCTTCTAA

mRNA sequence

ATGGAGAGTTGTCTCAAAACAGAAGATCAAGTTGCAGACATTCAATATTATATTCCATCAGCACGAGAGCTATCACGGTTGATAGGAGTATTCAAGGCTCCAGTGATACAACTTTTCTCCGAGACAATTTCTGGATCAACTACTATAAGGAGCTTCGAGCAAGAGTCGAGATTCAAGGATGCTAATATGAAATTGATTGATGCGTACTCTCGCCTCAGGTTTCACAATGCTACAGCAATGGAATGGCTTTGCTTTCGTCGCAATTTATTGTCTTCCATTGCATTTGCCTCGTTTTTAGTTTTCCAGATATCCATCCCTTTGGGAGTCATTGATCCAGGTTCATTATGCACCACAACTCCTGCTTGTGTTGTGAGACTCAACATCGCCCCTCAAGATCCTACAATGTTTGAAGGCATCGTGCAGAGCAATCTTGATCCCCTTGAAGAATATGCAGATGAAGACATTTGGGAGATAACATGTTTCCTCTTCTAA

Coding sequence (CDS)

ATGGAGAGTTGTCTCAAAACAGAAGATCAAGTTGCAGACATTCAATATTATATTCCATCAGCACGAGAGCTATCACGGTTGATAGGAGTATTCAAGGCTCCAGTGATACAACTTTTCTCCGAGACAATTTCTGGATCAACTACTATAAGGAGCTTCGAGCAAGAGTCGAGATTCAAGGATGCTAATATGAAATTGATTGATGCGTACTCTCGCCTCAGGTTTCACAATGCTACAGCAATGGAATGGCTTTGCTTTCGTCGCAATTTATTGTCTTCCATTGCATTTGCCTCGTTTTTAGTTTTCCAGATATCCATCCCTTTGGGAGTCATTGATCCAGGTTCATTATGCACCACAACTCCTGCTTGTGTTGTGAGACTCAACATCGCCCCTCAAGATCCTACAATGTTTGAAGGCATCGTGCAGAGCAATCTTGATCCCCTTGAAGAATATGCAGATGAAGACATTTGGGAGATAACATGTTTCCTCTTCTAA

Protein sequence

MESCLKTEDQVADIQYYIPSARELSRLIGVFKAPVIQLFSETISGSTTIRSFEQESRFKDANMKLIDAYSRLRFHNATAMEWLCFRRNLLSSIAFASFLVFQISIPLGVIDPGSLCTTTPACVVRLNIAPQDPTMFEGIVQSNLDPLEEYADEDIWEITCFLF*

Homology

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BLAST of Chy1G010880 vs. ExPASy Swiss-Prot
Match: Q9LK64 (ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 5.7e-30
Identity = 66/98 (67.35%), Postives = 79/98 (80.61%), Query Frame = 0


Query: 15   QYYIPSARELSRLIGVFKAPVIQLFSETISGSTTIRSFEQESRFKDANMKLIDAYSRLRF 74
            +YYI +ARELSRL+GV KAP+IQ FSETISG+TTIRSF QE RF+  NM+L D YSR +F
Sbjct: 1106 RYYIAAARELSRLVGVCKAPLIQHFSETISGATTIRSFSQEFRFRSDNMRLSDGYSRPKF 1165

Query: 75   HNATAMEWLCFRRNLLSSIAFASFLVFQISIPLGVIDP 113
            + A AMEWLCFR ++LSS+ F   LVF +SIP GVIDP
Sbjct: 1166 YTAGAMEWLCFRLDMLSSLTFVFSLVFLVSIPTGVIDP 1203

HSP 2 Score: 60.8 bits (146), Expect = 1.6e-08
Identity = 25/34 (73.53%), Postives = 30/34 (88.24%), Query Frame = 0


Query: 124  VRLNIAPQDPTMFEGIVQSNLDPLEEYADEDIWE 158
            +RL+I PQDPTMFEG ++SNLDPLEEY D+ IWE
Sbjct: 1344 LRLSIIPQDPTMFEGTMRSNLDPLEEYTDDQIWE 1377

[Close]

BLAST of Chy1G010880 vs. ExPASy Swiss-Prot
Match: Q8VZZ4 (ABC transporter C family member 6 OS=Arabidopsis thaliana OX=3702 GN=ABCC6 PE=2 SV=3)

HSP 1 Score: 127.5 bits (319), Expect = 1.4e-28
Identity = 92/272 (33.82%), Postives = 112/272 (41.18%), Query Frame = 0


Query: 15   QYYIPSARELSRLIGVFKAPVIQLFSETISGSTTIRSFEQESRFKDANMKLIDAYSRLRF 74
            QYYI +AREL+RL G+ ++PV+  FSET+SG TTIRSF+QE RF+   M+L D YSRL+F
Sbjct: 1056 QYYISAARELARLAGISRSPVVHHFSETLSGITTIRSFDQEPRFRGDIMRLSDCYSRLKF 1115

Query: 75   HNATAMEWLCFRRNLLSSIAFASFLVFQISIPLGVIDPG--------------------- 134
            H+  AMEWLCFR  LLS+ AFAS LV  +S P GVI+P                      
Sbjct: 1116 HSTGAMEWLCFRLELLSTFAFASSLVILVSAPEGVINPSLAGLAITYALNLNTLQATLIW 1175

Query: 135  SLC---------------------------TTTP-------------------------- 158
            +LC                           TT P                          
Sbjct: 1176 TLCDLENKMISVERMLQYTNIPSEPPLVIETTRPEKSWPSRGEITICNLQVRYGPHLPMV 1235

[Close]

BLAST of Chy1G010880 vs. ExPASy Swiss-Prot
Match: Q9LK62 (ABC transporter C family member 7 OS=Arabidopsis thaliana OX=3702 GN=ABCC7 PE=1 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 9.1e-28
Identity = 61/98 (62.24%), Postives = 79/98 (80.61%), Query Frame = 0


Query: 15   QYYIPSARELSRLIGVFKAPVIQLFSETISGSTTIRSFEQESRFKDANMKLIDAYSRLRF 74
            QYYI +AREL+RL G+ ++P++Q FSET+SG TTIRSF+QE RF+   M+L D YSRLRF
Sbjct: 1078 QYYISAARELARLSGISRSPLVQHFSETLSGITTIRSFDQEPRFRTDIMRLNDCYSRLRF 1137

Query: 75   HNATAMEWLCFRRNLLSSIAFASFLVFQISIPLGVIDP 113
            H  +AMEWLCFR +LLS++AFA  LV  +S+P GVI+P
Sbjct: 1138 HAISAMEWLCFRLDLLSTVAFALSLVILVSVPEGVINP 1175

HSP 2 Score: 61.6 bits (148), Expect = 9.4e-09
Identity = 26/33 (78.79%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 125  RLNIAPQDPTMFEGIVQSNLDPLEEYADEDIWE 158
            RL+I PQ+PTMFEG V+SNLDPLEEYAD+ IWE
Sbjct: 1317 RLSIIPQEPTMFEGTVRSNLDPLEEYADDQIWE 1349

[Close]

BLAST of Chy1G010880 vs. ExPASy Swiss-Prot
Match: Q9M1C7 (ABC transporter C family member 9 OS=Arabidopsis thaliana OX=3702 GN=ABCC9 PE=2 SV=2)

HSP 1 Score: 109.4 bits (272), Expect = 4.0e-23
Identity = 53/98 (54.08%), Postives = 75/98 (76.53%), Query Frame = 0


Query: 15   QYYIPSARELSRLIGVFKAPVIQLFSETISGSTTIRSFEQESRFKDANMKLIDAYSRLRF 74
            +YY P+ARELSR+ GV +AP++  F+E+++G+TTIR+F+Q  RF  +N+ LID++SR  F
Sbjct: 1092 RYYTPTARELSRMSGVERAPILHHFAESLAGATTIRAFDQRDRFISSNLVLIDSHSRPWF 1151

Query: 75   HNATAMEWLCFRRNLLSSIAFASFLVFQISIPLGVIDP 113
            H A+AMEWL FR NLLS   FA  LV  +++P GVI+P
Sbjct: 1152 HVASAMEWLSFRLNLLSHFVFAFSLVLLVTLPEGVINP 1189

HSP 2 Score: 50.8 bits (120), Expect = 1.7e-05
Identity = 19/33 (57.58%), Postives = 25/33 (75.76%), Query Frame = 0


Query: 125  RLNIAPQDPTMFEGIVQSNLDPLEEYADEDIWE 158
            RL I PQDP +F+G ++ NLDPL +Y D +IWE
Sbjct: 1331 RLGIIPQDPALFDGTIRLNLDPLAQYTDHEIWE 1363

[Close]

BLAST of Chy1G010880 vs. ExPASy Swiss-Prot
Match: Q7FB56 (Putative ABC transporter C family member 15 OS=Arabidopsis thaliana OX=3702 GN=ABCC15 PE=5 SV=2)

HSP 1 Score: 107.5 bits (267), Expect = 1.5e-22
Identity = 52/98 (53.06%), Postives = 74/98 (75.51%), Query Frame = 0


Query: 15  QYYIPSARELSRLIGVFKAPVIQLFSETISGSTTIRSFEQESRFKDANMKLIDAYSRLRF 74
           +YY P+ RELSR+ GV +AP++  F+E+++G+TTIR+F+Q  RF  +N+ LID++SR  F
Sbjct: 639 RYYTPTERELSRMSGVERAPILHHFAESLAGATTIRAFDQRDRFISSNLVLIDSHSRPWF 698

Query: 75  HNATAMEWLCFRRNLLSSIAFASFLVFQISIPLGVIDP 113
           H A+AMEWL FR NLLS   FA  LV  +++P GVI+P
Sbjct: 699 HVASAMEWLSFRLNLLSHFVFAFSLVLLVTLPEGVINP 736

HSP 2 Score: 47.4 bits (111), Expect = 1.8e-04
Identity = 18/33 (54.55%), Postives = 24/33 (72.73%), Query Frame = 0


Query: 125 RLNIAPQDPTMFEGIVQSNLDPLEEYADEDIWE 158
           RL I PQD  +F+G ++ NLDPL +Y D +IWE
Sbjct: 878 RLGIIPQDNALFDGTIRLNLDPLAQYTDREIWE 910

[Close]

BLAST of Chy1G010880 vs. ExPASy TrEMBL
Match: A0A7N2LTM1 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 1.5e-46
Identity = 103/161 (63.98%), Postives = 118/161 (73.29%), Query Frame = 0


Query: 15  QYYIPSARELSRLIGVFKAPVIQLFSETISGSTTIRSFEQESRFKDANMKLIDAYSRLRF 74
           QYYIPSARELSRL+GV KAPVIQ F ETISG+T IRSF++ESRF+D NM+L DA SR RF
Sbjct: 698 QYYIPSARELSRLVGVCKAPVIQDFIETISGATAIRSFDEESRFRDTNMELADANSRPRF 757

Query: 75  HNATAMEWLCFRRNLLSSIAFASFLVFQISIPLGVIDPGSLCTTTPACVV---------- 134
           + + AMEWLCF  ++LSSI FA FLVF ISIP GVIDPG +C T  +C+           
Sbjct: 758 NISGAMEWLCFCLDMLSSITFAFFLVFLISIPEGVIDPGMVCPTLASCITWPHMYFHWRN 817

Query: 135 --------RLNIAPQDPTMFEGIVQSNLDPLEEYADEDIWE 158
                   RL+I PQDPTMFEG V+SNLDPLEEY DE IWE
Sbjct: 818 ENWHCRENRLSIIPQDPTMFEGTVRSNLDPLEEYTDEKIWE 858

[Close]

BLAST of Chy1G010880 vs. ExPASy TrEMBL
Match: A0A6A1UGX0 (ABC transporter C family member 3 OS=Morella rubra OX=262757 GN=CJ030_MR0G027305 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 9.7e-41
Identity = 99/200 (49.50%), Postives = 117/200 (58.50%), Query Frame = 0


Query: 15  QYYIPSARELSRLIGVFKAPVIQLFSETISGSTTIRSFEQESRFKDANMKLIDAYSRLRF 74
           QYY+PSAREL+RL+GV KAPVIQ F+ETISGSTTIRSF+++SRF  ANMKL DAY R +F
Sbjct: 377 QYYLPSARELARLVGVCKAPVIQHFAETISGSTTIRSFDEDSRFSGANMKLTDAYCRPKF 436

Query: 75  HNATAMEWLCFRRNLLSSIAFASFLVFQISIPLGVIDPGSLCTTTPACVV---------- 134
           + A AMEWLCFR ++LSSI F   L F ISIP G+IDPG++C +   C+           
Sbjct: 437 NIAGAMEWLCFRLDVLSSITFVFSLFFLISIPEGLIDPGTVCPSHANCIARSDMHFPWGM 496

Query: 135 -----------------------------------------------RLNIAPQDPTMFE 158
                                                          RL+I PQDPTMFE
Sbjct: 497 KTGIVGRTGSGKSTLIQALFRIVEPTAGQIVIDGINISLIGLHDLRSRLSIIPQDPTMFE 556

[Close]

BLAST of Chy1G010880 vs. ExPASy TrEMBL
Match: A0A5D3C8T3 (ABC transporter C family member 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00050 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.1e-39
Identity = 114/272 (41.91%), Postives = 127/272 (46.69%), Query Frame = 0


Query: 15   QYYIPSARELSRLIGVFKAPVIQLFSETISGSTTIRSFEQESRFKDANMKLIDAYSRLRF 74
            QYYIPSARELSRLIGV KAPVIQLFSETISGSTTIRSF+QESRF+D NMKL DAYSR +F
Sbjct: 1097 QYYIPSARELSRLIGVCKAPVIQLFSETISGSTTIRSFDQESRFQDTNMKLTDAYSRPKF 1156

Query: 75   HNATAMEWLCFRRNLLSSIAFASFLVFQISIPLGVIDPG--------------------- 134
            H A AMEWLCFR +LLSSI FAS L+F ISIP+GVIDPG                     
Sbjct: 1157 HTAAAMEWLCFRLDLLSSITFASSLIFLISIPVGVIDPGIAGLSVTYGLNLNMLQAWLIW 1216

Query: 135  SLCT------------------TTPACVV------------------------------- 158
            +LC                   + P  ++                               
Sbjct: 1217 NLCNMENKIISVERIFQYTSIPSEPPLIIEENRPDQSWPAFGEIELHNLQVRYAPQLPLV 1276

[Close]

BLAST of Chy1G010880 vs. ExPASy TrEMBL
Match: A0A1S3CIL2 (LOW QUALITY PROTEIN: ABC transporter C family member 3-like OS=Cucumis melo OX=3656 GN=LOC103501226 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.1e-39
Identity = 114/272 (41.91%), Postives = 127/272 (46.69%), Query Frame = 0


Query: 15   QYYIPSARELSRLIGVFKAPVIQLFSETISGSTTIRSFEQESRFKDANMKLIDAYSRLRF 74
            QYYIPSARELSRLIGV KAPVIQLFSETISGSTTIRSF+QESRF+D NMKL DAYSR +F
Sbjct: 1098 QYYIPSARELSRLIGVCKAPVIQLFSETISGSTTIRSFDQESRFQDTNMKLTDAYSRPKF 1157

Query: 75   HNATAMEWLCFRRNLLSSIAFASFLVFQISIPLGVIDPG--------------------- 134
            H A AMEWLCFR +LLSSI FAS L+F ISIP+GVIDPG                     
Sbjct: 1158 HTAAAMEWLCFRLDLLSSITFASSLIFLISIPVGVIDPGIAGLSVTYGLNLNMLQAWLIW 1217

Query: 135  SLCT------------------TTPACVV------------------------------- 158
            +LC                   + P  ++                               
Sbjct: 1218 NLCNMENKIISVERIFQYTSIPSEPPLIIEENRPDQSWPAFGEIELHNLQVRYAPQLPLV 1277

[Close]

BLAST of Chy1G010880 vs. ExPASy TrEMBL
Match: A0A118K6C4 (AAA+ ATPase domain-containing protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_011174 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 5.3e-39
Identity = 93/178 (52.25%), Postives = 115/178 (64.61%), Query Frame = 0


Query: 10   QVADIQYYIPSARELSRLIGVFKAPVIQLFSETISGSTTIRSFEQESRFKDANMKLIDAY 69
            Q++  QYYI +AREL+RL+GV KAP+IQ F+ET+SGSTTIRSF QE RF+D NMKL+D Y
Sbjct: 1367 QISWQQYYISTARELARLVGVCKAPIIQHFTETVSGSTTIRSFRQEDRFQDTNMKLLDGY 1426

Query: 70   SRLRFHNATAMEWLCFRRNLLSSIAFASFLVFQISIPLGVIDP---GSLCTTTPACVVR- 129
            SR  FH+A A EWL FR  LL+S+ FA FL+F + IP G IDP   GS  +T    + R 
Sbjct: 1427 SRPNFHSAAAREWLSFRVELLASVTFAFFLIFLLIIPNGTIDPRRTGSGKSTLIQTLFRI 1486

Query: 130  --------------------------LNIAPQDPTMFEGIVQSNLDPLEEYADEDIWE 158
                                      L+I PQDPTMF+G V+SN+DPLE+Y DE IWE
Sbjct: 1487 IEPTMGAIFIDEINISTIGLHDLRSKLSIIPQDPTMFQGTVRSNMDPLEQYTDEQIWE 1544

[Close]

BLAST of Chy1G010880 vs. NCBI nr
Match: KAF3946841.1 (hypothetical protein CMV_026937 [Castanea mollissima])

HSP 1 Score: 194 bits (492), Expect = 4.39e-56
Identity = 101/161 (62.73%), Postives = 118/161 (73.29%), Query Frame = 0


Query: 15  QYYIPSARELSRLIGVFKAPVIQLFSETISGSTTIRSFEQESRFKDANMKLIDAYSRLRF 74
           QYYI SARELSRL+GV KAPVIQ F+ETISG+TTIRSF++ESRF+D NMKL DA SR RF
Sbjct: 235 QYYIHSARELSRLVGVCKAPVIQHFTETISGATTIRSFDEESRFRDTNMKLADANSRPRF 294

Query: 75  HNATAMEWLCFRRNLLSSIAFASFLVFQISIPLGVIDPGSLCTTTPACVV---------- 134
           + A AMEWLCFR ++LSS+  A  L+F ISIP GVIDPG++C T   C+           
Sbjct: 295 NIAGAMEWLCFRLDMLSSVTIAFSLLFLISIPEGVIDPGTVCPTHATCITWPHMYFPWRN 354

Query: 135 --------RLNIAPQDPTMFEGIVQSNLDPLEEYADEDIWE 157
                   RL+  PQDPTMFEGIV++NLDPLEEY DE IWE
Sbjct: 355 ENWHCRANRLSTIPQDPTMFEGIVRTNLDPLEEYTDEQIWE 395

[Close]

BLAST of Chy1G010880 vs. NCBI nr
Match: KAB1199137.1 (ABC transporter C family member 3 [Morella rubra])

HSP 1 Score: 176 bits (447), Expect = 2.79e-48
Identity = 99/200 (49.50%), Postives = 117/200 (58.50%), Query Frame = 0


Query: 15  QYYIPSARELSRLIGVFKAPVIQLFSETISGSTTIRSFEQESRFKDANMKLIDAYSRLRF 74
           QYY+PSAREL+RL+GV KAPVIQ F+ETISGSTTIRSF+++SRF  ANMKL DAY R +F
Sbjct: 377 QYYLPSARELARLVGVCKAPVIQHFAETISGSTTIRSFDEDSRFSGANMKLTDAYCRPKF 436

Query: 75  HNATAMEWLCFRRNLLSSIAFASFLVFQISIPLGVIDPGSLCTTTPACVVR--------- 134
           + A AMEWLCFR ++LSSI F   L F ISIP G+IDPG++C +   C+ R         
Sbjct: 437 NIAGAMEWLCFRLDVLSSITFVFSLFFLISIPEGLIDPGTVCPSHANCIARSDMHFPWGM 496

Query: 135 ------------------------------------------------LNIAPQDPTMFE 157
                                                           L+I PQDPTMFE
Sbjct: 497 KTGIVGRTGSGKSTLIQALFRIVEPTAGQIVIDGINISLIGLHDLRSRLSIIPQDPTMFE 556

[Close]

BLAST of Chy1G010880 vs. NCBI nr
Match: XP_038897718.1 (ABC transporter C family member 3-like [Benincasa hispida])

HSP 1 Score: 173 bits (439), Expect = 1.34e-46
Identity = 116/272 (42.65%), Postives = 128/272 (47.06%), Query Frame = 0


Query: 15   QYYIPSARELSRLIGVFKAPVIQLFSETISGSTTIRSFEQESRFKDANMKLIDAYSRLRF 74
            QYYIPSARELSRLIGV KAPVIQLFSETISGSTTIRSF+QESRF+DANMKL DAYSR +F
Sbjct: 1098 QYYIPSARELSRLIGVCKAPVIQLFSETISGSTTIRSFDQESRFQDANMKLTDAYSRPKF 1157

Query: 75   HNATAMEWLCFRRNLLSSIAFASFLVFQISIPLGVIDPG--------------------- 134
            H A AMEWLCFR +LLSSI FAS L+F ISIP+GVIDPG                     
Sbjct: 1158 HTAAAMEWLCFRLDLLSSITFASCLIFLISIPVGVIDPGIAGLSVTYGLNLNMLQAWLIW 1217

Query: 135  SLCT------------------TTPACVV------------------------------- 157
            +LC                   + P  V+                               
Sbjct: 1218 NLCNMENKIISVERIFQYTSIPSEPPLVIEENRPDCSWPAFGEVELHNLQVRYAPQLPLV 1277

[Close]

BLAST of Chy1G010880 vs. NCBI nr
Match: KAA0048731.1 (ABC transporter C family member 3-like [Cucumis melo var. makuwa] >TYK07895.1 ABC transporter C family member 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 171 bits (434), Expect = 6.33e-46
Identity = 114/272 (41.91%), Postives = 127/272 (46.69%), Query Frame = 0


Query: 15   QYYIPSARELSRLIGVFKAPVIQLFSETISGSTTIRSFEQESRFKDANMKLIDAYSRLRF 74
            QYYIPSARELSRLIGV KAPVIQLFSETISGSTTIRSF+QESRF+D NMKL DAYSR +F
Sbjct: 1097 QYYIPSARELSRLIGVCKAPVIQLFSETISGSTTIRSFDQESRFQDTNMKLTDAYSRPKF 1156

Query: 75   HNATAMEWLCFRRNLLSSIAFASFLVFQISIPLGVIDPG--------------------- 134
            H A AMEWLCFR +LLSSI FAS L+F ISIP+GVIDPG                     
Sbjct: 1157 HTAAAMEWLCFRLDLLSSITFASSLIFLISIPVGVIDPGIAGLSVTYGLNLNMLQAWLIW 1216

Query: 135  SLCT------------------TTPACVV------------------------------- 157
            +LC                   + P  ++                               
Sbjct: 1217 NLCNMENKIISVERIFQYTSIPSEPPLIIEENRPDQSWPAFGEIELHNLQVRYAPQLPLV 1276

[Close]

BLAST of Chy1G010880 vs. NCBI nr
Match: XP_008462964.2 (PREDICTED: LOW QUALITY PROTEIN: ABC transporter C family member 3-like [Cucumis melo])

HSP 1 Score: 171 bits (434), Expect = 6.33e-46
Identity = 114/272 (41.91%), Postives = 127/272 (46.69%), Query Frame = 0


Query: 15   QYYIPSARELSRLIGVFKAPVIQLFSETISGSTTIRSFEQESRFKDANMKLIDAYSRLRF 74
            QYYIPSARELSRLIGV KAPVIQLFSETISGSTTIRSF+QESRF+D NMKL DAYSR +F
Sbjct: 1098 QYYIPSARELSRLIGVCKAPVIQLFSETISGSTTIRSFDQESRFQDTNMKLTDAYSRPKF 1157

Query: 75   HNATAMEWLCFRRNLLSSIAFASFLVFQISIPLGVIDPG--------------------- 134
            H A AMEWLCFR +LLSSI FAS L+F ISIP+GVIDPG                     
Sbjct: 1158 HTAAAMEWLCFRLDLLSSITFASSLIFLISIPVGVIDPGIAGLSVTYGLNLNMLQAWLIW 1217

Query: 135  SLCT------------------TTPACVV------------------------------- 157
            +LC                   + P  ++                               
Sbjct: 1218 NLCNMENKIISVERIFQYTSIPSEPPLIIEENRPDQSWPAFGEIELHNLQVRYAPQLPLV 1277

[Close]

BLAST of Chy1G010880 vs. TAIR 10
Match: AT3G13080.2 (multidrug resistance-associated protein 3 )

HSP 1 Score: 132.1 bits (331), Expect = 4.0e-31
Identity = 66/98 (67.35%), Postives = 79/98 (80.61%), Query Frame = 0


Query: 15   QYYIPSARELSRLIGVFKAPVIQLFSETISGSTTIRSFEQESRFKDANMKLIDAYSRLRF 74
            +YYI +ARELSRL+GV KAP+IQ FSETISG+TTIRSF QE RF+  NM+L D YSR +F
Sbjct: 1106 RYYIAAARELSRLVGVCKAPLIQHFSETISGATTIRSFSQEFRFRSDNMRLSDGYSRPKF 1165

Query: 75   HNATAMEWLCFRRNLLSSIAFASFLVFQISIPLGVIDP 113
            + A AMEWLCFR ++LSS+ F   LVF +SIP GVIDP
Sbjct: 1166 YTAGAMEWLCFRLDMLSSLTFVFSLVFLVSIPTGVIDP 1203

[Close]

BLAST of Chy1G010880 vs. TAIR 10
Match: AT3G13080.1 (multidrug resistance-associated protein 3 )

HSP 1 Score: 132.1 bits (331), Expect = 4.0e-31
Identity = 66/98 (67.35%), Postives = 79/98 (80.61%), Query Frame = 0


Query: 15   QYYIPSARELSRLIGVFKAPVIQLFSETISGSTTIRSFEQESRFKDANMKLIDAYSRLRF 74
            +YYI +ARELSRL+GV KAP+IQ FSETISG+TTIRSF QE RF+  NM+L D YSR +F
Sbjct: 1106 RYYIAAARELSRLVGVCKAPLIQHFSETISGATTIRSFSQEFRFRSDNMRLSDGYSRPKF 1165

Query: 75   HNATAMEWLCFRRNLLSSIAFASFLVFQISIPLGVIDP 113
            + A AMEWLCFR ++LSS+ F   LVF +SIP GVIDP
Sbjct: 1166 YTAGAMEWLCFRLDMLSSLTFVFSLVFLVSIPTGVIDP 1203

HSP 2 Score: 60.8 bits (146), Expect = 1.1e-09
Identity = 25/34 (73.53%), Postives = 30/34 (88.24%), Query Frame = 0


Query: 124  VRLNIAPQDPTMFEGIVQSNLDPLEEYADEDIWE 158
            +RL+I PQDPTMFEG ++SNLDPLEEY D+ IWE
Sbjct: 1344 LRLSIIPQDPTMFEGTMRSNLDPLEEYTDDQIWE 1377

[Close]

BLAST of Chy1G010880 vs. TAIR 10
Match: AT3G13090.1 (multidrug resistance-associated protein 8 )

HSP 1 Score: 127.5 bits (319), Expect = 1.0e-29
Identity = 92/272 (33.82%), Postives = 112/272 (41.18%), Query Frame = 0


Query: 15   QYYIPSARELSRLIGVFKAPVIQLFSETISGSTTIRSFEQESRFKDANMKLIDAYSRLRF 74
            QYYI +AREL+RL G+ ++PV+  FSET+SG TTIRSF+QE RF+   M+L D YSRL+F
Sbjct: 1056 QYYISAARELARLAGISRSPVVHHFSETLSGITTIRSFDQEPRFRGDIMRLSDCYSRLKF 1115

Query: 75   HNATAMEWLCFRRNLLSSIAFASFLVFQISIPLGVIDPG--------------------- 134
            H+  AMEWLCFR  LLS+ AFAS LV  +S P GVI+P                      
Sbjct: 1116 HSTGAMEWLCFRLELLSTFAFASSLVILVSAPEGVINPSLAGLAITYALNLNTLQATLIW 1175

Query: 135  SLC---------------------------TTTP-------------------------- 158
            +LC                           TT P                          
Sbjct: 1176 TLCDLENKMISVERMLQYTNIPSEPPLVIETTRPEKSWPSRGEITICNLQVRYGPHLPMV 1235

[Close]

BLAST of Chy1G010880 vs. TAIR 10
Match: AT3G13100.1 (multidrug resistance-associated protein 7 )

HSP 1 Score: 124.8 bits (312), Expect = 6.5e-29
Identity = 61/98 (62.24%), Postives = 79/98 (80.61%), Query Frame = 0


Query: 15   QYYIPSARELSRLIGVFKAPVIQLFSETISGSTTIRSFEQESRFKDANMKLIDAYSRLRF 74
            QYYI +AREL+RL G+ ++P++Q FSET+SG TTIRSF+QE RF+   M+L D YSRLRF
Sbjct: 1078 QYYISAARELARLSGISRSPLVQHFSETLSGITTIRSFDQEPRFRTDIMRLNDCYSRLRF 1137

Query: 75   HNATAMEWLCFRRNLLSSIAFASFLVFQISIPLGVIDP 113
            H  +AMEWLCFR +LLS++AFA  LV  +S+P GVI+P
Sbjct: 1138 HAISAMEWLCFRLDLLSTVAFALSLVILVSVPEGVINP 1175

HSP 2 Score: 61.6 bits (148), Expect = 6.7e-10
Identity = 26/33 (78.79%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 125  RLNIAPQDPTMFEGIVQSNLDPLEEYADEDIWE 158
            RL+I PQ+PTMFEG V+SNLDPLEEYAD+ IWE
Sbjct: 1317 RLSIIPQEPTMFEGTVRSNLDPLEEYADDQIWE 1349

[Close]

BLAST of Chy1G010880 vs. TAIR 10
Match: AT3G60160.1 (multidrug resistance-associated protein 9 )

HSP 1 Score: 109.4 bits (272), Expect = 2.8e-24
Identity = 53/98 (54.08%), Postives = 75/98 (76.53%), Query Frame = 0


Query: 15   QYYIPSARELSRLIGVFKAPVIQLFSETISGSTTIRSFEQESRFKDANMKLIDAYSRLRF 74
            +YY P+ARELSR+ GV +AP++  F+E+++G+TTIR+F+Q  RF  +N+ LID++SR  F
Sbjct: 1092 RYYTPTARELSRMSGVERAPILHHFAESLAGATTIRAFDQRDRFISSNLVLIDSHSRPWF 1151

Query: 75   HNATAMEWLCFRRNLLSSIAFASFLVFQISIPLGVIDP 113
            H A+AMEWL FR NLLS   FA  LV  +++P GVI+P
Sbjct: 1152 HVASAMEWLSFRLNLLSHFVFAFSLVLLVTLPEGVINP 1189

HSP 2 Score: 50.8 bits (120), Expect = 1.2e-06
Identity = 19/33 (57.58%), Postives = 25/33 (75.76%), Query Frame = 0


Query: 125  RLNIAPQDPTMFEGIVQSNLDPLEEYADEDIWE 158
            RL I PQDP +F+G ++ NLDPL +Y D +IWE
Sbjct: 1331 RLGIIPQDPALFDGTIRLNLDPLAQYTDHEIWE 1363

The following BLAST results are available for this feature:

BLAST of Chy1G010880 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LK64	5.7e-30	67.35	ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 ...	[more]
Q8VZZ4	1.4e-28	33.82	ABC transporter C family member 6 OS=Arabidopsis thaliana OX=3702 GN=ABCC6 PE=2 ...	[more]
Q9LK62	9.1e-28	62.24	ABC transporter C family member 7 OS=Arabidopsis thaliana OX=3702 GN=ABCC7 PE=1 ...	[more]
Q9M1C7	4.0e-23	54.08	ABC transporter C family member 9 OS=Arabidopsis thaliana OX=3702 GN=ABCC9 PE=2 ...	[more]
Q7FB56	1.5e-22	53.06	Putative ABC transporter C family member 15 OS=Arabidopsis thaliana OX=3702 GN=A...	[more]

BLAST of Chy1G010880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7N2LTM1	1.5e-46	63.98	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A6A1UGX0	9.7e-41	49.50	ABC transporter C family member 3 OS=Morella rubra OX=262757 GN=CJ030_MR0G027305...	[more]
A0A5D3C8T3	3.1e-39	41.91	ABC transporter C family member 3-like OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A1S3CIL2	3.1e-39	41.91	LOW QUALITY PROTEIN: ABC transporter C family member 3-like OS=Cucumis melo OX=3...	[more]
A0A118K6C4	5.3e-39	52.25	AAA+ ATPase domain-containing protein OS=Cynara cardunculus var. scolymus OX=598...	[more]

BLAST of Chy1G010880 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF3946841.1	4.39e-56	62.73	hypothetical protein CMV_026937 [Castanea mollissima]	[more]
KAB1199137.1	2.79e-48	49.50	ABC transporter C family member 3 [Morella rubra]	[more]
XP_038897718.1	1.34e-46	42.65	ABC transporter C family member 3-like [Benincasa hispida]	[more]
KAA0048731.1	6.33e-46	41.91	ABC transporter C family member 3-like [Cucumis melo var. makuwa] >TYK07895.1 AB...	[more]
XP_008462964.2	6.33e-46	41.91	PREDICTED: LOW QUALITY PROTEIN: ABC transporter C family member 3-like [Cucumis ...	[more]

BLAST of Chy1G010880 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G13080.2	4.0e-31	67.35	multidrug resistance-associated protein 3	[more]
AT3G13080.1	4.0e-31	67.35	multidrug resistance-associated protein 3	[more]
AT3G13090.1	1.0e-29	33.82	multidrug resistance-associated protein 8	[more]
AT3G13100.1	6.5e-29	62.24	multidrug resistance-associated protein 7	[more]
AT3G60160.1	2.8e-24	54.08	multidrug resistance-associated protein 9	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036640	ABC transporter type 1, transmembrane domain superfamily	GENE3D	1.20.1560.10	ABC transporter type 1, transmembrane domain	coord: 14..121 e-value: 3.1E-14 score: 54.7
IPR036640	ABC transporter type 1, transmembrane domain superfamily	SUPERFAMILY	90123	ABC transporter transmembrane region	coord: 15..111
None	No IPR available	PANTHER	PTHR24223	ATP-BINDING CASSETTE SUB-FAMILY C	coord: 124..158
None	No IPR available	PANTHER	PTHR24223:SF380	MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN	coord: 14..114
None	No IPR available	PANTHER	PTHR24223:SF380	MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN	coord: 124..158
None	No IPR available	PANTHER	PTHR24223	ATP-BINDING CASSETTE SUB-FAMILY C	coord: 14..114
IPR011527	ABC transporter type 1, transmembrane domain	PROSITE	PS50929	ABC_TM1F	coord: 14..101 score: 11.655581

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy1G010880.1	Chy1G010880.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0140359	ABC-type transporter activity
molecular_function	GO:0005524	ATP binding