Chy1G009780 (gene) Cucumber (hystrix) v1

Overview


Name	Chy1G009780
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Plant transposase
Location	chrH01: 9947563 .. 9947902 (-)
RNA-Seq Expression	Chy1G009780
Synteny	Chy1G009780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTAGATTATGGAGAGCAAGCAAATCTCATATGGTGAGTAAGATTAGTGAAGCTTCAAATGACGATGAGTTGAATAAACTCAAGCCAGATAACATTTCTTCAATGCATGATTGGAATGACTTTGTCAAAAATAAAACCAGTGCAACATTCAAGGTATGTTTGTAGTATGAAAGTTGGTGGCATTTATTTCTTTTGTTCAAGGTATGGAAACAAGTTTAGTCTTAACCTTTATTGATATCTCGTTGAGTATGAATTTCAGGCAAAAAGCAAGATGTTTAAAGATATGAAAAAAAGCAACTTCCTCACACTTGTAGTCGTAGAGGCTATGCTCGGCTAG

mRNA sequence

ATGGGTAGATTATGGAGAGCAAGCAAATCTCATATGGTGAGTAAGATTAGTGAAGCTTCAAATGACGATGAGTTGAATAAACTCAAGCCAGATAACATTTCTTCAATGCATGATTGGAATGACTTTGTCAAAAATAAAACCAGTGCAACATTCAAGGCAAAAAGCAAGATGTTTAAAGATATGAAAAAAAGCAACTTCCTCACACTTGTAGTCGTAGAGGCTATGCTCGGCTAG

Coding sequence (CDS)

ATGGGTAGATTATGGAGAGCAAGCAAATCTCATATGGTGAGTAAGATTAGTGAAGCTTCAAATGACGATGAGTTGAATAAACTCAAGCCAGATAACATTTCTTCAATGCATGATTGGAATGACTTTGTCAAAAATAAAACCAGTGCAACATTCAAGGCAAAAAGCAAGATGTTTAAAGATATGAAAAAAAGCAACTTCCTCACACTTGTAGTCGTAGAGGCTATGCTCGGCTAG

Protein sequence

MGRLWRASKSHMVSKISEASNDDELNKLKPDNISSMHDWNDFVKNKTSATFKAKSKMFKDMKKSNFLTLVVVEAMLG*

Homology

[Close]

BLAST of Chy1G009780 vs. ExPASy TrEMBL
Match: A0A5A7TIU1 (Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G002550 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.8e-22
Identity = 55/63 (87.30%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 1   MGRLWRASKSHMVSKISEASNDDELNKLKPDNISSMHDWNDFVKNKTSATFKAKSKMFKD 60
           MG LWRASKSH+VSKI EASND+ELNKLKPDNISSMHDWNDF+K+KTSATFKAKSK FKD
Sbjct: 195 MGGLWRASKSHLVSKIGEASNDEELNKLKPDNISSMHDWNDFIKHKTSATFKAKSKKFKD 254

Query: 61  MKK 64
           MK+
Sbjct: 255 MKQ 257

[Close]

BLAST of Chy1G009780 vs. ExPASy TrEMBL
Match: A0A5A7UI65 (Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold11091G00020 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.4e-21
Identity = 54/63 (85.71%), Postives = 59/63 (93.65%), Query Frame = 0


Query: 1   MGRLWRASKSHMVSKISEASNDDELNKLKPDNISSMHDWNDFVKNKTSATFKAKSKMFKD 60
           MG LWRASKS +VSKI EASND+ELNKLKPDNISSMHDWNDF+K+KTSATFKAKSK FKD
Sbjct: 195 MGGLWRASKSRLVSKIGEASNDEELNKLKPDNISSMHDWNDFIKHKTSATFKAKSKTFKD 254

Query: 61  MKK 64
           MK+
Sbjct: 255 MKQ 257

[Close]

BLAST of Chy1G009780 vs. ExPASy TrEMBL
Match: A0A5A7SRN7 (Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G00120 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.4e-21
Identity = 54/63 (85.71%), Postives = 59/63 (93.65%), Query Frame = 0


Query: 1   MGRLWRASKSHMVSKISEASNDDELNKLKPDNISSMHDWNDFVKNKTSATFKAKSKMFKD 60
           MG LWRASKS +VSKI EASND+ELNKLKPDNISSMHDWNDF+K+KTSATFKAKSK FKD
Sbjct: 195 MGGLWRASKSRLVSKIGEASNDEELNKLKPDNISSMHDWNDFIKHKTSATFKAKSKKFKD 254

Query: 61  MKK 64
           MK+
Sbjct: 255 MKQ 257

[Close]

BLAST of Chy1G009780 vs. ExPASy TrEMBL
Match: A0A5A7UNU1 (Transposase_23 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold226G00350 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.4e-21
Identity = 54/63 (85.71%), Postives = 59/63 (93.65%), Query Frame = 0


Query: 1   MGRLWRASKSHMVSKISEASNDDELNKLKPDNISSMHDWNDFVKNKTSATFKAKSKMFKD 60
           MG LWRASKS +VSKI EASND+ELNKLKPDNISSMHDWNDF+K+KTSATFKAKSK FKD
Sbjct: 179 MGGLWRASKSRLVSKIGEASNDEELNKLKPDNISSMHDWNDFIKHKTSATFKAKSKKFKD 238

Query: 61  MKK 64
           MK+
Sbjct: 239 MKQ 241

[Close]

BLAST of Chy1G009780 vs. ExPASy TrEMBL
Match: A0A5D3CTK4 (Transposase_23 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1610G00080 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 4.1e-21
Identity = 53/63 (84.13%), Postives = 59/63 (93.65%), Query Frame = 0


Query: 1   MGRLWRASKSHMVSKISEASNDDELNKLKPDNISSMHDWNDFVKNKTSATFKAKSKMFKD 60
           MG LWRASKS +VSKI EASND+ELNK+KPDNISSMHDWNDF+K+KTSATFKAKSK FKD
Sbjct: 239 MGGLWRASKSRLVSKIGEASNDEELNKIKPDNISSMHDWNDFIKHKTSATFKAKSKKFKD 298

Query: 61  MKK 64
           MK+
Sbjct: 299 MKQ 301

[Close]

BLAST of Chy1G009780 vs. NCBI nr
Match: KAA0041269.1 (Plant transposase [Cucumis melo var. makuwa])

HSP 1 Score: 112 bits (279), Expect = 4.66e-28
Identity = 55/62 (88.71%), Postives = 59/62 (95.16%), Query Frame = 0


Query: 1   MGRLWRASKSHMVSKISEASNDDELNKLKPDNISSMHDWNDFVKNKTSATFKAKSKMFKD 60
           MG LWRASKSH+VSKI EASND+ELNKLKPDNISSMHDWNDF+K+KTSATFKAKSK FKD
Sbjct: 195 MGGLWRASKSHLVSKIGEASNDEELNKLKPDNISSMHDWNDFIKHKTSATFKAKSKKFKD 254

Query: 61  MK 62
           MK
Sbjct: 255 MK 256

[Close]

BLAST of Chy1G009780 vs. NCBI nr
Match: TYK01589.1 (Plant transposase [Cucumis melo var. makuwa])

HSP 1 Score: 103 bits (258), Expect = 6.27e-27
Identity = 52/63 (82.54%), Postives = 56/63 (88.89%), Query Frame = 0


Query: 1  MGRLWRASKSHMVSKISEASNDDELNKLKPDNISSMHDWNDFVKNKTSATFKAKSKMFKD 60
          MGRLW+ASKS +VSKI EASND+ELNKLKPDNISSMHDWNDFVK KTS  FKAK K FKD
Sbjct: 1  MGRLWKASKSRLVSKIGEASNDEELNKLKPDNISSMHDWNDFVKYKTSVIFKAKRKKFKD 60

Query: 61 MKK 63
          M+K
Sbjct: 61 MEK 63

[Close]

BLAST of Chy1G009780 vs. NCBI nr
Match: KAA0053956.1 (Plant transposase [Cucumis melo var. makuwa])

HSP 1 Score: 108 bits (271), Expect = 8.45e-27
Identity = 54/62 (87.10%), Postives = 58/62 (93.55%), Query Frame = 0


Query: 1   MGRLWRASKSHMVSKISEASNDDELNKLKPDNISSMHDWNDFVKNKTSATFKAKSKMFKD 60
           MG LWRASKS +VSKI EASND+ELNKLKPDNISSMHDWNDF+K+KTSATFKAKSK FKD
Sbjct: 195 MGGLWRASKSRLVSKIGEASNDEELNKLKPDNISSMHDWNDFIKHKTSATFKAKSKTFKD 254

Query: 61  MK 62
           MK
Sbjct: 255 MK 256

[Close]

BLAST of Chy1G009780 vs. NCBI nr
Match: KAA0056267.1 (uncharacterized protein E6C27_scaffold226G00350 [Cucumis melo var. makuwa])

HSP 1 Score: 108 bits (271), Expect = 6.24e-26
Identity = 54/62 (87.10%), Postives = 58/62 (93.55%), Query Frame = 0


Query: 1   MGRLWRASKSHMVSKISEASNDDELNKLKPDNISSMHDWNDFVKNKTSATFKAKSKMFKD 60
           MG LWRASKS +VSKI EASND+ELNKLKPDNISSMHDWNDF+K+KTSATFKAKSK FKD
Sbjct: 179 MGGLWRASKSRLVSKIGEASNDEELNKLKPDNISSMHDWNDFIKHKTSATFKAKSKKFKD 238

Query: 61  MK 62
           MK
Sbjct: 239 MK 240

[Close]

BLAST of Chy1G009780 vs. NCBI nr
Match: KAA0032201.1 (Plant transposase [Cucumis melo var. makuwa])

HSP 1 Score: 108 bits (271), Expect = 1.26e-25
Identity = 54/62 (87.10%), Postives = 58/62 (93.55%), Query Frame = 0


Query: 1   MGRLWRASKSHMVSKISEASNDDELNKLKPDNISSMHDWNDFVKNKTSATFKAKSKMFKD 60
           MG LWRASKS +VSKI EASND+ELNKLKPDNISSMHDWNDF+K+KTSATFKAKSK FKD
Sbjct: 195 MGGLWRASKSRLVSKIGEASNDEELNKLKPDNISSMHDWNDFIKHKTSATFKAKSKKFKD 254

Query: 61  MK 62
           MK
Sbjct: 255 MK 256

The following BLAST results are available for this feature:

BLAST of Chy1G009780 vs.


Match Name	E-value	Identity	Description

BLAST of Chy1G009780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TIU1	2.8e-22	87.30	Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G00...	[more]
A0A5A7UI65	2.4e-21	85.71	Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold11091G...	[more]
A0A5A7SRN7	2.4e-21	85.71	Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G00...	[more]
A0A5A7UNU1	2.4e-21	85.71	Transposase_23 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3CTK4	4.1e-21	84.13	Transposase_23 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]

BLAST of Chy1G009780 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0041269.1	4.66e-28	88.71	Plant transposase [Cucumis melo var. makuwa]	[more]
TYK01589.1	6.27e-27	82.54	Plant transposase [Cucumis melo var. makuwa]	[more]
KAA0053956.1	8.45e-27	87.10	Plant transposase [Cucumis melo var. makuwa]	[more]
KAA0056267.1	6.24e-26	87.10	uncharacterized protein E6C27_scaffold226G00350 [Cucumis melo var. makuwa]	[more]
KAA0032201.1	1.26e-25	87.10	Plant transposase [Cucumis melo var. makuwa]	[more]

BLAST of Chy1G009780 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy1G009780.1	Chy1G009780.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane