Chy1G009490 (gene) Cucumber (hystrix) v1

Overview
NameChy1G009490
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionGlutamate-gated kainate-type ion channel receptor subunit GluR5
LocationchrH01: 9324060 .. 9324548 (+)
RNA-Seq ExpressionChy1G009490
SyntenyChy1G009490
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTACTTTCTTTCAAGTTTAGATTCATTCTCTTCTTAACACTTGTTCTCGCTCTCACCTCCATTTCCTCAGACTCTGCGAGACTTCCGACACCGTATTGGGAGCAGATGTTGCCTAAGAAGTTGCCCTCTCCATCGTCTGCGCCGTCCAAAGGGACAAACACCGTCGCTCCGTCTTCTTCTAAACCTATGAAAGTTAATGGGAATCTGCCAGCAAAGGACGGTAACGTTTAGGTTTCCGGTGGTACGAGGAAGTTGATACTTTTTGCTTGTTGAGCAAATTATTCAGTCAGACCGTCGTAATGCAGGTCGCTTCCTTATGTTTAAAATGTAGTTTTTAATTTCTCTCCTGCGTCGGTCTGTTCCAGGCCTGACGAATAATTTCTCACCCGGAACGAAGGGAAAATTGAGGGACTGAAGGATGAGCGGGGCAACGTGGTGGTTTACGATCGTGCCGGAGCTGCCACAGTTCAGTGGCATGAGCTCTGA

mRNA sequence

ATGTTACTTTCTTTCAAGTTTAGATTCATTCTCTTCTTAACACTTGTTCTCGCTCTCACCTCCATTTCCTCAGACTCTGCGAGACTTCCGACACCGTATTGGGAGCAGATGTTGCCTAAGAAGTTGCCCTCTCCATCGTCTGCGCCGTCCAAAGGGACAAACACCGTCGCTCCGTCTTCTTCTAAACCTATGAAAGTTAATGGGAATCTGCCAGCAAAGGACGGGAAAATTGAGGGACTGAAGGATGAGCGGGGCAACGTGGTGGTTTACGATCGTGCCGGAGCTGCCACAGTTCAGTGGCATGAGCTCTGA

Coding sequence (CDS)

ATGTTACTTTCTTTCAAGTTTAGATTCATTCTCTTCTTAACACTTGTTCTCGCTCTCACCTCCATTTCCTCAGACTCTGCGAGACTTCCGACACCGTATTGGGAGCAGATGTTGCCTAAGAAGTTGCCCTCTCCATCGTCTGCGCCGTCCAAAGGGACAAACACCGTCGCTCCGTCTTCTTCTAAACCTATGAAAGTTAATGGGAATCTGCCAGCAAAGGACGGGAAAATTGAGGGACTGAAGGATGAGCGGGGCAACGTGGTGGTTTACGATCGTGCCGGAGCTGCCACAGTTCAGTGGCATGAGCTCTGA

Protein sequence

MLLSFKFRFILFLTLVLALTSISSDSARLPTPYWEQMLPKKLPSPSSAPSKGTNTVAPSSSKPMKVNGNLPAKDGKIEGLKDERGNVVVYDRAGAATVQWHEL*
Homology
BLAST of Chy1G009490 vs. ExPASy TrEMBL
Match: A0A5D3DI56 (Glutamate-gated kainate-type ion channel receptor subunit GluR5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G003180 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 7.1e-29
Identity = 70/77 (90.91%), Postives = 75/77 (97.40%), Query Frame = 0

Query: 1  MLLSFKFRFILFLTLVLALTSISSDSARLPTPYWEQMLPKKLPSPSSAPSKGTNTVAPSS 60
          MLL+F FRFILFLTL+LALTSISSD+AR+PTPYWEQMLPKKLPSPSSAPSKGTNTVAPSS
Sbjct: 1  MLLAFNFRFILFLTLILALTSISSDAARVPTPYWEQMLPKKLPSPSSAPSKGTNTVAPSS 60

Query: 61 SKPMKVNGNLPAKDGKI 78
          SKPMKVNGNLPAKDG +
Sbjct: 61 SKPMKVNGNLPAKDGNV 77

BLAST of Chy1G009490 vs. ExPASy TrEMBL
Match: A0A7N2MJW9 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 5.1e-11
Identity = 42/77 (54.55%), Postives = 57/77 (74.03%), Query Frame = 0

Query: 1  MLLSFKFRFILFLTLVLALTSISSDSARLPTPYWEQMLPKKLPSPSSAPSKGTNTVAPSS 60
          ML S++ + +LF  L      + S+++RLP  YWEQMLPKKLP PSS+PSKGTN+++ SS
Sbjct: 1  MLGSWRHKCLLFTLLAFI---VLSEASRLPKEYWEQMLPKKLPCPSSSPSKGTNSLSKSS 60

Query: 61 SKPMKVNGNLPAKDGKI 78
          SK +K N NLP+ DGK+
Sbjct: 61 SKALKANRNLPSSDGKV 74

BLAST of Chy1G009490 vs. ExPASy TrEMBL
Match: W9S9P5 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_012616 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.1e-10
Identity = 43/68 (63.24%), Postives = 55/68 (80.88%), Query Frame = 0

Query: 11 LFLTLVLALTSISSDSARLPTPYWEQMLPKKLPSPSSAPSKGTNTVA-PSSSKPMKVNGN 70
          LFLTL+ AL  I S+++RLP   WEQMLPKKLPSP+S+PSKGTN+V+  SSSK + V+ N
Sbjct: 10 LFLTLIFALV-ILSEASRLPKSSWEQMLPKKLPSPNSSPSKGTNSVSTSSSSKEVNVDKN 69

Query: 71 LPAKDGKI 78
          LP+ DGK+
Sbjct: 70 LPSSDGKV 76

BLAST of Chy1G009490 vs. ExPASy TrEMBL
Match: A0A803PR73 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.5e-10
Identity = 41/77 (53.25%), Postives = 60/77 (77.92%), Query Frame = 0

Query: 1   MLLSFKFRFILFLTLVLALTSISSDSARLPTPYWEQMLPKKLPSPSSAPSKGTNTVAPSS 60
           ML S++ ++ LF  L++A   + S+++RLP  Y++QM+PKKLPSPSS+PSKGTN+V  SS
Sbjct: 37  MLGSWRQKYCLFFILLIAFIDL-SEASRLPKEYFKQMMPKKLPSPSSSPSKGTNSVTTSS 96

Query: 61  SKPMKVNGNLPAKDGKI 78
           SK +K + NLP+ DGK+
Sbjct: 97  SKAVKADANLPSFDGKV 112

BLAST of Chy1G009490 vs. ExPASy TrEMBL
Match: A0A0S3RNK5 (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.03G214100 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 5.6e-10
Identity = 44/77 (57.14%), Postives = 54/77 (70.13%), Query Frame = 0

Query: 1  MLLSFKFRFILFLTLVLALTSISSDSARLPTPYWEQMLPKKLPSPSSAPSKGTNTVAPSS 60
          M  S+K + +LF  L + L    S+ +RLP  YWEQMLPKKLPSPSS+PSKGTN+V PSS
Sbjct: 1  MKASWKHQCLLFTLLAIVLL---SEGSRLPKEYWEQMLPKKLPSPSSSPSKGTNSVTPSS 60

Query: 61 SKPMKVNGNLPAKDGKI 78
          S  M+ N  LP  DGK+
Sbjct: 61 SSTME-NHGLPTSDGKV 73

BLAST of Chy1G009490 vs. NCBI nr
Match: KAE8646070.1 (hypothetical protein Csa_015561 [Cucumis sativus])

HSP 1 Score: 137 bits (344), Expect = 8.76e-40
Identity = 71/77 (92.21%), Postives = 75/77 (97.40%), Query Frame = 0

Query: 1  MLLSFKFRFILFLTLVLALTSISSDSARLPTPYWEQMLPKKLPSPSSAPSKGTNTVAPSS 60
          MLLSF FRFILFLTLVLALTSIS+D+AR+PTPYWEQMLPKKLPSPSSAPSKGTNTVAPSS
Sbjct: 1  MLLSFNFRFILFLTLVLALTSISTDAARVPTPYWEQMLPKKLPSPSSAPSKGTNTVAPSS 60

Query: 61 SKPMKVNGNLPAKDGKI 77
          SKPMKVNGNLPAKDG +
Sbjct: 61 SKPMKVNGNLPAKDGNV 77

BLAST of Chy1G009490 vs. NCBI nr
Match: TYK23265.1 (glutamate-gated kainate-type ion channel receptor subunit GluR5 [Cucumis melo var. makuwa])

HSP 1 Score: 136 bits (343), Expect = 1.25e-39
Identity = 70/77 (90.91%), Postives = 75/77 (97.40%), Query Frame = 0

Query: 1  MLLSFKFRFILFLTLVLALTSISSDSARLPTPYWEQMLPKKLPSPSSAPSKGTNTVAPSS 60
          MLL+F FRFILFLTL+LALTSISSD+AR+PTPYWEQMLPKKLPSPSSAPSKGTNTVAPSS
Sbjct: 1  MLLAFNFRFILFLTLILALTSISSDAARVPTPYWEQMLPKKLPSPSSAPSKGTNTVAPSS 60

Query: 61 SKPMKVNGNLPAKDGKI 77
          SKPMKVNGNLPAKDG +
Sbjct: 61 SKPMKVNGNLPAKDGNV 77

BLAST of Chy1G009490 vs. NCBI nr
Match: KAG6607702.1 (hypothetical protein SDJN03_01044, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 103 bits (256), Expect = 8.28e-26
Identity = 60/91 (65.93%), Postives = 71/91 (78.02%), Query Frame = 0

Query: 1   MLLSFKFRFILFLTLVLALTSISSDSARLPTPYWEQMLPKKLPSPSSAPSKGTNTVAPSS 60
           M LSF+ RFI  L LVLAL S+SS++AR+PT YWEQMLPKKLP+PSSAPSKGTN+VA SS
Sbjct: 22  MFLSFRPRFIFILLLVLALASMSSEAARVPTKYWEQMLPKKLPTPSSAPSKGTNSVASSS 81

Query: 61  SKPMKVNGNLPAKDGKIEGLKDERGNVVVYD 91
            K +KV+GNLPAK  K  G +   G+V  YD
Sbjct: 82  FKTVKVDGNLPAKV-KDGGFRGGGGDVADYD 111

BLAST of Chy1G009490 vs. NCBI nr
Match: BAT82172.1 (hypothetical protein VIGAN_03214100 [Vigna angularis var. angularis])

HSP 1 Score: 75.9 bits (185), Expect = 1.26e-15
Identity = 43/74 (58.11%), Postives = 54/74 (72.97%), Query Frame = 0

Query: 4  SFKFRFILFLTLVLALTSISSDSARLPTPYWEQMLPKKLPSPSSAPSKGTNTVAPSSSKP 63
          S+K + +LF  L + L S   + +RLP  YWEQMLPKKLPSPSS+PSKGTN+V PSSS  
Sbjct: 4  SWKHQCLLFTLLAIVLLS---EGSRLPKEYWEQMLPKKLPSPSSSPSKGTNSVTPSSSST 63

Query: 64 MKVNGNLPAKDGKI 77
          M+ +G LP  DGK+
Sbjct: 64 MENHG-LPTSDGKV 73

BLAST of Chy1G009490 vs. NCBI nr
Match: KAF9855135.1 (hypothetical protein H0E87_006638 [Populus deltoides])

HSP 1 Score: 75.9 bits (185), Expect = 1.32e-15
Identity = 42/77 (54.55%), Postives = 59/77 (76.62%), Query Frame = 0

Query: 1  MLLSFKFRFILFLTLVLALTSISSDSARLPTPYWEQMLPKKLPSPSSAPSKGTNTVAPSS 60
          ML+S++ + +LF   +LA   +SSD++RLP  YWEQMLPKKLP+PSS+PSKGTN+V+ S 
Sbjct: 1  MLVSWRQKCLLFT--LLAFVVLSSDASRLPKAYWEQMLPKKLPAPSSSPSKGTNSVSRSY 60

Query: 61 SKPMKVNGNLPAKDGKI 77
          S  +K + NL + DGK+
Sbjct: 61 STTVKSDSNLSSSDGKV 75

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DI567.1e-2990.91Glutamate-gated kainate-type ion channel receptor subunit GluR5 OS=Cucumis melo ... [more]
A0A7N2MJW95.1e-1154.55Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
W9S9P51.1e-1063.24Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_012616 PE=4 SV=1[more]
A0A803PR732.5e-1053.25Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A0S3RNK55.6e-1057.14Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.03G... [more]
Match NameE-valueIdentityDescription
KAE8646070.18.76e-4092.21hypothetical protein Csa_015561 [Cucumis sativus][more]
TYK23265.11.25e-3990.91glutamate-gated kainate-type ion channel receptor subunit GluR5 [Cucumis melo va... [more]
KAG6607702.18.28e-2665.93hypothetical protein SDJN03_01044, partial [Cucurbita argyrosperma subsp. sorori... [more]
BAT82172.11.26e-1558.11hypothetical protein VIGAN_03214100 [Vigna angularis var. angularis][more]
KAF9855135.11.32e-1554.55hypothetical protein H0E87_006638 [Populus deltoides][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..66
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 40..77

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy1G009490.1Chy1G009490.1mRNA