Chy1G009300 (gene) Cucumber (hystrix) v1

Overview


Name	Chy1G009300
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Retrotrans_gag domain-containing protein
Location	chrH01: 8798145 .. 8800532 (+)
RNA-Seq Expression	Chy1G009300
Synteny	Chy1G009300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTAGGTTGTCAAATGCATCTAGATTAGAATTTAAAGAAGACATAACCTTGCATGAAAGAAGACTAAGGAAAGAAAAGAAAAAGTTAGTAAGTTCATCCTTAGAGCCTCACATTTTCACATTTGAACCATCCCTTGAAGAACCCCTAGAGCCTTCCTTAGAGAACAATTTAAATAATCTAATGGGAGAAGAGGCACCCGAAAAAACACTTAGGGAATTATATAAGCCCGATATTCACCAAAGACCAATAGGGATAGTAATTCCACCTACCACGACCAATTTTCACCTTAGGTCGGATTTAATCTCAAACTTACCTATCTTTAGAGGATCCAATGGAGAAGACCCACATAAACATCTTAGGGATTTTTCTTGGACATGTGACCTCCTTAGACCACATGGGGTAACCGAGGAACAATTGAACCTTAGGGCATTTCCCTTTTCCCTTGCCGATAGTGCCAAAAGATGGCTTATAAACTTAGAGCCTCAAACCATCACCACTTGGGAACAACTTAAGAAAAGGTTCTTAGAAAAATTCTTCCCAATAACTAGAGCCCAAACGGTCTTAAAAGAAATCTATGGTGCTAGGCAATCCAATAAAGAAACTTTGTTTGAATATTGGGAGAGGTATAATGAACTTTGTGCAAGGTTGCCTTACAACCAATTAAGTGAGAGAGACATTGTGCAATATTTCTATTCGGGGTTGTTACCATCGGTTAGGGACTCCATAGATGCCGCTTCGGGAGGAGCCTTGATTGATAAAACTCCCTCCGAAGCTAGGAGGTTAGTTTCTAGAATGGCCGAAAATTCTCAAAACTTTACTACTAGTAGAACACTTGATTTGAACTCTTCTTTGTCTTCTGATAACTCTGTTAAAGAGCAAGTGAATCTACTTACTAAAATGTTTACTTCTTTTGTGAAAGGAGAGGTACCCAAAGTAGTTTCATGTGGAGTATGTGGCTTGCTTGGCCACCATAATGACCAATGTCCTGAGATAAAAGAGGTAAGTGCCTTGGGAGGATATAGAAGGAATGATTCACAGAGTAATGCTTACAACTCTGGATGGAGGGACGATCCAAGTCTTAGATGGGGTCCACAACAACCCAAACATAACAACACTCCTTCACCATCATCATCAAAAGGTACGTACTTAGAAGAGATAGTTTCCAAGTTAGCTTTTAGCTCAAATAGCTTTAAAAATGATTTTGAGAAGAATCTAGCTAAATTGAGTGATTATACCGTTAGTTCAACCGGAGACATTAAAAATAATGTGCAAAACATGAAAACATCTATCTCAGAGTTAGGAAACAAGTTAGACCAATTGGCAATCCAATTTCTTAAAACGGAGGGGAAAGGCAAACTTCCCGCCCAACCAAATCATGCTAATGTAAGTGCCATCACCTTGAGAAGTGGTAAGGTTTTAAATGAAAATGATGATGTTCCTTTACCTCATTCTGACCCTAACTGGAAAAAAAGTGATTCAAATAACAAAGAAGAAAACAAGGTACATACTAACCCTTCTCGTTCTAATGCTTCTTCTTCTAACAATGATTCAAACAACCATATTGATAATCCTCCACCTCCTTTTCCTTCTAGGTTATCTCAACCAAGGAAAGAACTCAAGAATGATGAAGAACTCCTTGAAGTTTTCAAGAAGGTAGAAGTGAACCTACCCCTCTTGACGGCAATCAAAAGCATACCAAGGTACGCAAAATTTCTTAAGGAGTTATGCACTAACAAGAGGAGAAGTAGAATCCAAGAAAAGGTAACGGTTAGTAAAAATGTCTCTTCACTCATAAAGAAGAATCTTCCGGAAAAATGTGTTGATCCGGGTATGTTTTCACTTGCTTGCACTATAGGAAATAGAGACATATCTAGTGCCATGCTTGATTTAGGTGCTTCCATTAATGTCATGCCACTTAGTGTTTTCAAAGACCTAGGATTGAATGGACTTGAAAGGACTAGCATTTGTATTCAACTTGCCGATAGATCTTTTATTTCGCCATTAGGGGTTGTAGAAGATGTCCTAGTTAAGGTAGGAAATCTAATATTCCCCGCTGATTTTTACATAATTGAAATGAACAATGAATTTGCACGTACATCTCCTACCATACTTTTAGGAAGACCATTTTTGAAAACCGCTAAAGCCATAATTAATGTTGATAAAGGTCTTCTTAGTGTTGAGTTTGATGGTGATGTTGTGTCTTTCAATATTTTTGATGATATAAAGTCCTCTAATGATCATGTTTCATTGTGTGCACTTGATACTTTAGAATCATTAGAAACATTAGAAGAGCATGATAAACTCAATGAGCTTATAGACCAAGCAACTTTAGAATATGTTGATAATGAATTTTCTAAAGAGAAACCTAATGATGATGATCTTTCA

mRNA sequence

ATGACTAGGTTGTCAAATGCATCTAGATTAGAATTTAAAGAAGACATAACCTTGCATGAAAGAAGACTAAGGAAAGAAAAGAAAAAGTTAGTAAGTTCATCCTTAGAGCCTCACATTTTCACATTTGAACCATCCCTTGAAGAACCCCTAGAGCCTTCCTTAGAGAACAATTTAAATAATCTAATGGGAGAAGAGGCACCCGAAAAAACACTTAGGGAATTATATAAGCCCGATATTCACCAAAGACCAATAGGGATAGTAATTCCACCTACCACGACCAATTTTCACCTTAGGTCGGATTTAATCTCAAACTTACCTATCTTTAGAGGATCCAATGGAGAAGACCCACATAAACATCTTAGGGATTTTTCTTGGACATGTGACCTCCTTAGACCACATGGGGTAACCGAGGAACAATTGAACCTTAGGGCATTTCCCTTTTCCCTTGCCGATAGTGCCAAAAGATGGCTTATAAACTTAGAGCCTCAAACCATCACCACTTGGGAACAACTTAAGAAAAGGTTCTTAGAAAAATTCTTCCCAATAACTAGAGCCCAAACGGTCTTAAAAGAAATCTATGGTGCTAGGCAATCCAATAAAGAAACTTTGTTTGAATATTGGGAGAGGTATAATGAACTTTGTGCAAGGTTGCCTTACAACCAATTAAGTGAGAGAGACATTGTGCAATATTTCTATTCGGGGTTGTTACCATCGGTTAGGGACTCCATAGATGCCGCTTCGGGAGGAGCCTTGATTGATAAAACTCCCTCCGAAGCTAGGAGTAGTTTCATGTGGAGTATGTGGCTTGCTTGGCCACCATAATGACCAATGTCCTGAGATAAAAGAGGGACGATCCAAGTCTTAGATGGGGTCCACAACAACCCAAACATAACAACACTCCTTCACCATCATCATCAAAAGAGTTAGGAAACAAGTTAGACCAATTGGCAATCCAATTTCTTAAAACGGAGGGGAAAGGCAAACTTCCCGCCCAACCAAATCATGCTAATGTAAGTGCCATCACCTTGAGAAGTGGTAAGGTTTTAAATGAAAATGATGATGTTCCTTTACCTCATTCTGACCCTAACTGGAAAAAAAGTGATTCAAATAACAAAGAAGAAAACAAGGTACATACTAACCCTTCTCGTTCTAATGCTTCTTCTTCTAACAATGATTCAAACAACCATATTGATAATCCTCCACCTCCTTTTCCTTCTAGGTTATCTCAACCAAGGAAAGAACTCAAGAATGATGAAGAACTCCTTGAAGTTTTCAAGAAGGTAGAAGTGAACCTACCCCTCTTGACGGCAATCAAAAGCATACCAAGTGTTGAGTTTGATGGTGATGTTGTGTCTTTCAATATTTTTGATGATATAAAGTCCTCTAATGATCATGTTTCATTGTGTGCACTTGATACTTTAGAATCATTAGAAACATTAGAAGAGCATGATAAACTCAATGAGCTTATAGACCAAGCAACTTTAGAATATGTTGATAATGAATTTTCTAAAGAGAAACCTAATGATGATGATCTTTCA

Coding sequence (CDS)

ATGACTAGGTTGTCAAATGCATCTAGATTAGAATTTAAAGAAGACATAACCTTGCATGAAAGAAGACTAAGGAAAGAAAAGAAAAAGTTAGTAAGTTCATCCTTAGAGCCTCACATTTTCACATTTGAACCATCCCTTGAAGAACCCCTAGAGCCTTCCTTAGAGAACAATTTAAATAATCTAATGGGAGAAGAGGCACCCGAAAAAACACTTAGGGAATTATATAAGCCCGATATTCACCAAAGACCAATAGGGATAGTAATTCCACCTACCACGACCAATTTTCACCTTAGGTCGGATTTAATCTCAAACTTACCTATCTTTAGAGGATCCAATGGAGAAGACCCACATAAACATCTTAGGGATTTTTCTTGGACATGTGACCTCCTTAGACCACATGGGGTAACCGAGGAACAATTGAACCTTAGGGCATTTCCCTTTTCCCTTGCCGATAGTGCCAAAAGATGGCTTATAAACTTAGAGCCTCAAACCATCACCACTTGGGAACAACTTAAGAAAAGGTTCTTAGAAAAATTCTTCCCAATAACTAGAGCCCAAACGGTCTTAAAAGAAATCTATGGTGCTAGGCAATCCAATAAAGAAACTTTGTTTGAATATTGGGAGAGGTATAATGAACTTTGTGCAAGGTTGCCTTACAACCAATTAAGTGAGAGAGACATTGTGCAATATTTCTATTCGGGGTTGTTACCATCGGTTAGGGACTCCATAGATGCCGCTTCGGGAGGAGCCTTGATTGATAAAACTCCCTCCGAAGCTAGGAGTAGTTTCATGTGGAGTATGTGGCTTGCTTGGCCACCATAATGACCAATGTCCTGAGATAAAAGAGGGACGATCCAAGTCTTAGATGGGGTCCACAACAACCCAAACATAACAACACTCCTTCACCATCATCATCAAAAGAGTTAGGAAACAAGTTAGACCAATTGGCAATCCAATTTCTTAAAACGGAGGGGAAAGGCAAACTTCCCGCCCAACCAAATCATGCTAATGTAAGTGCCATCACCTTGAGAAGTGGTAAGGTTTTAAATGAAAATGATGATGTTCCTTTACCTCATTCTGACCCTAACTGGAAAAAAAGTGATTCAAATAACAAAGAAGAAAACAAGGTACATACTAACCCTTCTCGTTCTAATGCTTCTTCTTCTAACAATGATTCAAACAACCATATTGATAATCCTCCACCTCCTTTTCCTTCTAGGTTATCTCAACCAAGGAAAGAACTCAAGAATGATGAAGAACTCCTTGAAGTTTTCAAGAAGGTAGAAGTGAACCTACCCCTCTTGACGGCAATCAAAAGCATACCAAGTGTTGAGTTTGATGGTGATGTTGTGTCTTTCAATATTTTTGATGATATAAAGTCCTCTAATGATCATGTTTCATTGTGTGCACTTGATACTTTAGAATCATTAGAAACATTAGAAGAGCATGATAAACTCAATGAGCTTATAGACCAAGCAACTTTAGAATATGTTGATAATGAATTTTCTAAAGAGAAACCTAATGATGATGATCTTTCA

Protein sequence

MTRLSNASRLEFKEDITLHERRLRKEKKKLVSSSLEPHIFTFEPSLEEPLEPSLENNLNNLMGEEAPEKTLRELYKPDIHQRPIGIVIPPTTTNFHLRSDLISNLPIFRGSNGEDPHKHLRDFSWTCDLLRPHGVTEEQLNLRAFPFSLADSAKRWLINLEPQTITTWEQLKKRFLEKFFPITRAQTVLKEIYGARQSNKETLFEYWERYNELCARLPYNQLSERDIVQYFYSGLLPSVRDSIDAASGGALIDKTPSEARSSFMWSMWLAWPP**PMS*DKRGTIQVLDGVHNNPNITTLLHHHHQKS*ETS*TNWQSNFLKRRGKANFPPNQIMLM*VPSP*EVVRF*MKMMMFLYLILTLTGKKVIQITKKKTRYILTLLVLMLLLLTMIQTTILIILHLLFLLGYLNQGKNSRMMKNSLKFSRR*K*TYPS*RQSKAYQVLSLMVMLCLSIFLMI*SPLMIMFHCVHLIL*NH*KH*KSMINSMSL*TKQL*NMLIMNFLKRNLMMMIFX

Homology

[Close]

BLAST of Chy1G009300 vs. ExPASy TrEMBL
Match: A0A5A7SRF5 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00500 PE=4 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 8.5e-67
Identity = 140/265 (52.83%), Postives = 185/265 (69.81%), Query Frame = 0


Query: 1   MTRLSNASRLEFK--EDITLHERRLRKEKKK---LVSSSLEPHIFTFEPSLEEPLEPSLE 60
           MTR SN   LEF   ED+    RR+R+E+++   + + S +  +   EPSL+ PL+P+L 
Sbjct: 1   MTRSSN---LEFPYFEDLNKEVRRIRRERREENNIPNLSNQEPLRGLEPSLDSPLDPNLG 60

Query: 61  NNLNNLMGEEAPEKTLRELYKPDIHQRPIGIVIPPTTTNFHLRSDLISNLPIFRGSNGED 120
                 MG E  EKT+R+L + D  QRP+ IVI  TT  F L+  LI  LPIF+G++GED
Sbjct: 61  ---RGNMG-EVREKTIRKLDELDEDQRPLCIVISLTTQPFELKPRLIHLLPIFKGNSGED 120

Query: 121 PHKHLRDFSWTCDLLRPHGVTEEQLNLRAFPFSLADSAKRWLINLEPQTITTWEQLKKRF 180
           PHKHL+DF   CD +RPHG++EEQLNLRAFPFSL D AKRWL  LEP +ITTW  LKK+F
Sbjct: 121 PHKHLKDFHMVCDSMRPHGISEEQLNLRAFPFSLTDVAKRWLYYLEPGSITTWGSLKKKF 180

Query: 181 LEKFFPITRAQTVLKEIYGARQSNKETLFEYWERYNELCARLPYNQLSERDIVQYFYSGL 240
           LEKFFP +R   + KEIYG RQ+  E+L +YWE++ ELCA  P++ +    ++QYFY GL
Sbjct: 181 LEKFFPASRTNNIRKEIYGIRQAFGESLLKYWEKFKELCANFPHHHIFYPSLIQYFYFGL 240

Query: 241 LPSVRDSIDAASGGALIDKTPSEAR 261
           L S R+++DAA+GGAL +K P+EAR
Sbjct: 241 LSSDRNTVDAAAGGALANKIPTEAR 258

[Close]

BLAST of Chy1G009300 vs. ExPASy TrEMBL
Match: A0A5D3DIP6 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold605G00340 PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 3.2e-66
Identity = 144/265 (54.34%), Postives = 180/265 (67.92%), Query Frame = 0


Query: 1   MTRLSNASRLEFKEDITLHERRLRKEKKKLVS----SSLEPHIFTFEPSLEEPLEPSL-E 60
           MTR SN  +  + ED+    RR+R+E+++  S    S+ EP +   EPSL+ PL+P+L  
Sbjct: 1   MTRSSNL-KFSYFEDLNREVRRIRRERREENSIHNLSNQEP-LRGLEPSLDSPLDPNLGR 60

Query: 61  NNLNNLMGEEAPEKTLRELYKPDIHQRPIGIVIPPTTTNFHLRSDLISNLPIFRGSNGED 120
            NL      E  EKTLREL +PD  QRP+ IVIP TT  F L+S LI  L IF+GS GED
Sbjct: 61  GNLG-----EVREKTLRELAEPDEDQRPLCIVIPSTTQPFELKSGLIHLLLIFKGSFGED 120

Query: 121 PHKHLRDFSWTCDLLRPHGVTEEQLNLRAFPFSLADSAKRWLINLEPQTITTWEQLKKRF 180
            HKHL+DF   C  +RPH ++EEQLNLRAFPF L D AKRWL  LEP  ITTW  LKK+F
Sbjct: 121 LHKHLKDFHMVCGSMRPHSISEEQLNLRAFPFFLTDVAKRWLYYLEPDFITTWSSLKKKF 180

Query: 181 LEKFFPITRAQTVLKEIYGARQSNKETLFEYWERYNELCARLPYNQLSERDIVQYFYSGL 240
           LEKFFP +RA  + KEIYG RQ+  E+L EYWER  EL A  P++ +S+  ++QYFYSGL
Sbjct: 181 LEKFFPASRANNIRKEIYGIRQAFGESLSEYWERSKELYASFPHHHISDPSLIQYFYSGL 240

Query: 241 LPSVRDSIDAASGGALIDKTPSEAR 261
           L S R+++D A+GGAL DKT  E R
Sbjct: 241 LSSDRNTVDTAAGGALADKTLIEVR 258

[Close]

BLAST of Chy1G009300 vs. ExPASy TrEMBL
Match: A0A5A7ULP9 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G002040 PE=4 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 5.1e-64
Identity = 132/237 (55.70%), Postives = 165/237 (69.62%), Query Frame = 0


Query: 23  LRKEKKKLVSSSLEPHIFTFEPSLEEPLEPSLENNLNNLMGEEAPEKTLRELYKPDIHQR 82
           +R+E   L  S+ EP +   EPSL+ P    L+ NL      E  E TLREL KPD  QR
Sbjct: 1   MREENNILNLSNQEP-LRGLEPSLDSP----LDTNLGRGNMGEVREMTLRELAKPDEDQR 60

Query: 83  PIGIVIPPTTTNFHLRSDLISNLPIFRGSNGEDPHKHLRDFSWTCDLLRPHGVTEEQLNL 142
           P+ IVIPPTT  F L+S LI  L IF+GS+ ED HKHL+DF   CD +RPHG++EEQLNL
Sbjct: 61  PLCIVIPPTTQPFELKSGLIHFLTIFKGSSREDSHKHLKDFHMVCDSMRPHGISEEQLNL 120

Query: 143 RAFPFSLADSAKRWLINLEPQTITTWEQLKKRFLEKFFPITRAQTVLKEIYGARQSNKET 202
           RAFPFSL D AKRWL  LE  +ITTW  LKK+FLEK FP +R     KEIYG RQ+  E+
Sbjct: 121 RAFPFSLTDVAKRWLYYLELGSITTWGSLKKKFLEKIFPASRINNNRKEIYGIRQAFGES 180

Query: 203 LFEYWERYNELCARLPYNQLSERDIVQYFYSGLLPSVRDSIDAASGGALIDKTPSEA 260
           L EYWER+ +LCA  P++ +S+  ++QYFYSG L   R+++DAA+GGAL +KTP+EA
Sbjct: 181 LSEYWERFKKLCASFPHHHISDPSLIQYFYSGFLSFDRNTVDAAAGGALANKTPTEA 232

[Close]

BLAST of Chy1G009300 vs. ExPASy TrEMBL
Match: A0A5A7USL5 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G004630 PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 3.3e-63
Identity = 119/196 (60.71%), Postives = 148/196 (75.51%), Query Frame = 0


Query: 65  EAPEKTLRELYKPDIHQRPIGIVIPPTTTNFHLRSDLISNLPIFRGSNGEDPHKHLRDFS 124
           E  EK LREL +P+   RP+ IVIPPTT  F L+  LI  LPIF+GS+GEDPHKHL+DF 
Sbjct: 3   EVREKILRELAEPNEDHRPLCIVIPPTTQPFELKPGLIHLLPIFKGSSGEDPHKHLKDFH 62

Query: 125 WTCDLLRPHGVTEEQLNLRAFPFSLADSAKRWLINLEPQTITTWEQLKKRFLEKFFPITR 184
             CD +RP+ ++EEQLNLRAFPF L D AK WL  LEP +ITTW  LKK+FLEKFFP +R
Sbjct: 63  MVCDSMRPYSISEEQLNLRAFPFFLTDVAKIWLYYLEPGSITTWGSLKKKFLEKFFPASR 122

Query: 185 AQTVLKEIYGARQSNKETLFEYWERYNELCARLPYNQLSERDIVQYFYSGLLPSVRDSID 244
           A  + KEIYG RQ+  E+L +YWER+ ELCA LP+  + +  ++QYFYSGLL   R+++D
Sbjct: 123 ANNIRKEIYGIRQAFGESLSKYWERFKELCASLPHYHIFDPSLIQYFYSGLLSFDRNTVD 182

Query: 245 AASGGALIDKTPSEAR 261
           AA+GGAL DKTP+EAR
Sbjct: 183 AATGGALADKTPTEAR 198

[Close]

BLAST of Chy1G009300 vs. ExPASy TrEMBL
Match: A0A6P6SJY7 (uncharacterized protein LOC113692270 OS=Coffea arabica OX=13443 GN=LOC113692270 PE=4 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 1.2e-60
Identity = 130/267 (48.69%), Postives = 167/267 (62.55%), Query Frame = 0


Query: 1   MTRLSNASRLEFKEDITLHERRLRKEKK-------KLVSSSLEPHIFTFEPSLEEPLEPS 60
           M R S   +LEF  +I    RRL KE K          SS LE +    + S+E      
Sbjct: 1   MPRSSRTGKLEFDPEIEKTTRRLIKETKMQKQQTSTAQSSELEQNFHFGDASIE------ 60

Query: 61  LENNLNNLMGEEAPEKTLRELYKPDIHQRPIGIVIPPTTTNFHLRSDLISNLPIFRGSNG 120
           LE N        A ++TLREL  PD++Q+P+ I    T   F L S LI  LP FR   G
Sbjct: 61  LETNSPRPNETMAAQRTLRELATPDVNQQPLCITYLDTEEAFELNSGLIHLLPTFRSVAG 120

Query: 121 EDPHKHLRDFSWTCDLLRPHGVTEEQLNLRAFPFSLADSAKRWLINLEPQTITTWEQLKK 180
           EDPHKHL++F   C  +RP GVTE+Q+  RAFPFSLAD AK WL  L   +ITTWE LK+
Sbjct: 121 EDPHKHLKEFHVVCSTMRPQGVTEKQIKSRAFPFSLADKAKDWLFYLPSGSITTWEALKR 180

Query: 181 RFLEKFFPITRAQTVLKEIYGARQSNKETLFEYWERYNELCARLPYNQLSERDIVQYFYS 240
           +FLEKFFP +RA  + KEI G RQ+N ETL+EYW+R+ +LCA  P++Q+ ++ ++QYFY 
Sbjct: 181 QFLEKFFPASRAANIRKEICGVRQANGETLYEYWKRFKQLCASCPHHQIPDQLLIQYFYE 240

Query: 241 GLLPSVRDSIDAASGGALIDKTPSEAR 261
           GL P  R  +DAASGGAL++KTP EA+
Sbjct: 241 GLQPMDRSMVDAASGGALVNKTPDEAK 261

[Close]

BLAST of Chy1G009300 vs. NCBI nr
Match: KAE8652898.1 (hypothetical protein Csa_022680 [Cucumis sativus])

HSP 1 Score: 480 bits (1235), Expect = 3.61e-162
Identity = 236/256 (92.19%), Postives = 244/256 (95.31%), Query Frame = 0


Query: 1   MTRLSNASRLEFKEDITLHERRLRKEKKKLVSSSLEPHIFTFEPSLEEPLEPSLENNLNN 60
           MTRLSNASRLEF+EDITL+E RLRKEKKKL +SSLEP+IFTFE SLEEPLEPS ENNLNN
Sbjct: 1   MTRLSNASRLEFEEDITLNEIRLRKEKKKLANSSLEPYIFTFERSLEEPLEPSFENNLNN 60

Query: 61  LMGEEAPEKTLRELYKPDIHQRPIGIVIPPTTTNFHLRSDLISNLPIFRGSNGEDPHKHL 120
           LMGEEAPEKTLRELY+PD+HQRPIG VIPPTTTNFHLRS+LI NLPI RGSNGEDPHKHL
Sbjct: 61  LMGEEAPEKTLRELYEPDVHQRPIGKVIPPTTTNFHLRSNLILNLPIIRGSNGEDPHKHL 120

Query: 121 RDFSWTCDLLRPHGVTEEQLNLRAFPFSLADSAKRWLINLEPQTITTWEQLKKRFLEKFF 180
           RDFSW CDLLRPHGVTEEQLNLRAFPFSL DSAKRWLINLEPQT TTWEQLKKRFLEKFF
Sbjct: 121 RDFSWACDLLRPHGVTEEQLNLRAFPFSLVDSAKRWLINLEPQTFTTWEQLKKRFLEKFF 180

Query: 181 PITRAQTVLKEIYGARQSNKETLFEYWERYNELCARLPYNQLSERDIVQYFYSGLLPSVR 240
           PITRAQTVLKEIYGARQSN ETLFEYWERYNELCAR PYNQLSERDIVQYFY+GLLPSVR
Sbjct: 181 PITRAQTVLKEIYGARQSNNETLFEYWERYNELCARFPYNQLSERDIVQYFYTGLLPSVR 240

Query: 241 DSIDAASGGALIDKTP 256
           DSIDAASGGALIDKTP
Sbjct: 241 DSIDAASGGALIDKTP 256

[Close]

BLAST of Chy1G009300 vs. NCBI nr
Match: KAA0054379.1 (uncharacterized protein E6C27_scaffold24G001140 [Cucumis melo var. makuwa] >TYK12416.1 uncharacterized protein E5676_scaffold302G002040 [Cucumis melo var. makuwa])

HSP 1 Score: 251 bits (641), Expect = 2.33e-76
Identity = 133/237 (56.12%), Postives = 167/237 (70.46%), Query Frame = 0


Query: 23  LRKEKKKLVSSSLEPHIFTFEPSLEEPLEPSLENNLNNLMGEEAPEKTLRELYKPDIHQR 82
           +R+E   L  S+ EP +   EPSL+ PL+ +L       MGE   E TLREL KPD  QR
Sbjct: 1   MREENNILNLSNQEP-LRGLEPSLDSPLDTNLGRGN---MGE-VREMTLRELAKPDEDQR 60

Query: 83  PIGIVIPPTTTNFHLRSDLISNLPIFRGSNGEDPHKHLRDFSWTCDLLRPHGVTEEQLNL 142
           P+ IVIPPTT  F L+S LI  L IF+GS+ ED HKHL+DF   CD +RPHG++EEQLNL
Sbjct: 61  PLCIVIPPTTQPFELKSGLIHFLTIFKGSSREDSHKHLKDFHMVCDSMRPHGISEEQLNL 120

Query: 143 RAFPFSLADSAKRWLINLEPQTITTWEQLKKRFLEKFFPITRAQTVLKEIYGARQSNKET 202
           RAFPFSL D AKRWL  LE  +ITTW  LKK+FLEK FP +R     KEIYG RQ+  E+
Sbjct: 121 RAFPFSLTDVAKRWLYYLELGSITTWGSLKKKFLEKIFPASRINNNRKEIYGIRQAFGES 180

Query: 203 LFEYWERYNELCARLPYNQLSERDIVQYFYSGLLPSVRDSIDAASGGALIDKTPSEA 259
           L EYWER+ +LCA  P++ +S+  ++QYFYSG L   R+++DAA+GGAL +KTP+EA
Sbjct: 181 LSEYWERFKKLCASFPHHHISDPSLIQYFYSGFLSFDRNTVDAAAGGALANKTPTEA 232

[Close]

BLAST of Chy1G009300 vs. NCBI nr
Match: KAA0031967.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK16787.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 260 bits (665), Expect = 3.17e-76
Identity = 140/265 (52.83%), Postives = 185/265 (69.81%), Query Frame = 0


Query: 1   MTRLSNASRLEFK--EDITLHERRLRKEKKK---LVSSSLEPHIFTFEPSLEEPLEPSLE 60
           MTR SN   LEF   ED+    RR+R+E+++   + + S +  +   EPSL+ PL+P+L 
Sbjct: 1   MTRSSN---LEFPYFEDLNKEVRRIRRERREENNIPNLSNQEPLRGLEPSLDSPLDPNLG 60

Query: 61  NNLNNLMGEEAPEKTLRELYKPDIHQRPIGIVIPPTTTNFHLRSDLISNLPIFRGSNGED 120
                 MGE   EKT+R+L + D  QRP+ IVI  TT  F L+  LI  LPIF+G++GED
Sbjct: 61  RGN---MGE-VREKTIRKLDELDEDQRPLCIVISLTTQPFELKPRLIHLLPIFKGNSGED 120

Query: 121 PHKHLRDFSWTCDLLRPHGVTEEQLNLRAFPFSLADSAKRWLINLEPQTITTWEQLKKRF 180
           PHKHL+DF   CD +RPHG++EEQLNLRAFPFSL D AKRWL  LEP +ITTW  LKK+F
Sbjct: 121 PHKHLKDFHMVCDSMRPHGISEEQLNLRAFPFSLTDVAKRWLYYLEPGSITTWGSLKKKF 180

Query: 181 LEKFFPITRAQTVLKEIYGARQSNKETLFEYWERYNELCARLPYNQLSERDIVQYFYSGL 240
           LEKFFP +R   + KEIYG RQ+  E+L +YWE++ ELCA  P++ +    ++QYFY GL
Sbjct: 181 LEKFFPASRTNNIRKEIYGIRQAFGESLLKYWEKFKELCANFPHHHIFYPSLIQYFYFGL 240

Query: 241 LPSVRDSIDAASGGALIDKTPSEAR 260
           L S R+++DAA+GGAL +K P+EAR
Sbjct: 241 LSSDRNTVDAAAGGALANKIPTEAR 258

[Close]

BLAST of Chy1G009300 vs. NCBI nr
Match: KAA0025369.1 (uncharacterized protein E6C27_scaffold1204G00530 [Cucumis melo var. makuwa] >TYK23432.1 uncharacterized protein E5676_scaffold605G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 258 bits (660), Expect = 4.74e-75
Identity = 144/265 (54.34%), Postives = 180/265 (67.92%), Query Frame = 0


Query: 1   MTRLSNASRLEFKEDITLHERRLRKEKKKLVS----SSLEPHIFTFEPSLEEPLEPSL-E 60
           MTR SN  +  + ED+    RR+R+E+++  S    S+ EP +   EPSL+ PL+P+L  
Sbjct: 1   MTRSSNL-KFSYFEDLNREVRRIRRERREENSIHNLSNQEP-LRGLEPSLDSPLDPNLGR 60

Query: 61  NNLNNLMGEEAPEKTLRELYKPDIHQRPIGIVIPPTTTNFHLRSDLISNLPIFRGSNGED 120
            NL      E  EKTLREL +PD  QRP+ IVIP TT  F L+S LI  L IF+GS GED
Sbjct: 61  GNLG-----EVREKTLRELAEPDEDQRPLCIVIPSTTQPFELKSGLIHLLLIFKGSFGED 120

Query: 121 PHKHLRDFSWTCDLLRPHGVTEEQLNLRAFPFSLADSAKRWLINLEPQTITTWEQLKKRF 180
            HKHL+DF   C  +RPH ++EEQLNLRAFPF L D AKRWL  LEP  ITTW  LKK+F
Sbjct: 121 LHKHLKDFHMVCGSMRPHSISEEQLNLRAFPFFLTDVAKRWLYYLEPDFITTWSSLKKKF 180

Query: 181 LEKFFPITRAQTVLKEIYGARQSNKETLFEYWERYNELCARLPYNQLSERDIVQYFYSGL 240
           LEKFFP +RA  + KEIYG RQ+  E+L EYWER  EL A  P++ +S+  ++QYFYSGL
Sbjct: 181 LEKFFPASRANNIRKEIYGIRQAFGESLSEYWERSKELYASFPHHHISDPSLIQYFYSGL 240

Query: 241 LPSVRDSIDAASGGALIDKTPSEAR 260
           L S R+++D A+GGAL DKT  E R
Sbjct: 241 LSSDRNTVDTAAGGALADKTLIEVR 258

[Close]

BLAST of Chy1G009300 vs. NCBI nr
Match: XP_031131881.1 (uncharacterized protein LOC116033267 [Ipomoea triloba])

HSP 1 Score: 254 bits (650), Expect = 3.04e-73
Identity = 129/261 (49.43%), Postives = 175/261 (67.05%), Query Frame = 0


Query: 1   MTRLSNASRLEFKEDITLHERRLRKEKKKLVSSSLEPHI-FTFEPSLEEPLEPSLENNLN 60
           MTR S++  L++  +I    R+LRKE K+  SSS    +  T +P  EE +    E N  
Sbjct: 1   MTRSSHSGELQYIPEIEKVARQLRKETKQRNSSSSSEEVNSTCDPINEEVVSKMAEQN-- 60

Query: 61  NLMGEEAPEKTLRELYKPDIHQRPIGIVIPPTTTNFHLRSDLISNLPIFRGSNGEDPHKH 120
                    +TLREL  PD++Q+P+ I +P    +F L+S LI  LPIFRG  GEDPHKH
Sbjct: 61  --------NRTLRELATPDLNQQPLCITVPNLEVDFALKSGLIHLLPIFRGLAGEDPHKH 120

Query: 121 LRDFSWTCDLLRPHGVTEEQLNLRAFPFSLADSAKRWLINLEPQTITTWEQLKKRFLEKF 180
           L++F   C  ++P GVT+E + LRAFPFSL D AK WL N+ P+++TTW  +KK FLEKF
Sbjct: 121 LKEFQVVCAGMKPRGVTDEHITLRAFPFSLKDKAKDWLYNIPPESVTTWNDVKKLFLEKF 180

Query: 181 FPITRAQTVLKEIYGARQSNKETLFEYWERYNELCARLPYNQLSERDIVQYFYSGLLPSV 240
           FP ++A  + KEIYG RQ   +TLFEYWER+  LC+  P++Q+SE+ ++QYFY GLLP  
Sbjct: 181 FPASKATNIRKEIYGIRQCTGKTLFEYWERFKGLCSSCPHHQISEQHLIQYFYEGLLPMD 240

Query: 241 RDSIDAASGGALIDKTPSEAR 260
           R  +DAASGG+L+DKTP++AR
Sbjct: 241 RSMVDAASGGSLVDKTPTDAR 251

The following BLAST results are available for this feature:

BLAST of Chy1G009300 vs.


Match Name	E-value	Identity	Description

BLAST of Chy1G009300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SRF5	8.5e-67	52.83	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5D3DIP6	3.2e-66	54.34	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7ULP9	5.1e-64	55.70	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7USL5	3.3e-63	60.71	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A6P6SJY7	1.2e-60	48.69	uncharacterized protein LOC113692270 OS=Coffea arabica OX=13443 GN=LOC113692270 ...	[more]

BLAST of Chy1G009300 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8652898.1	3.61e-162	92.19	hypothetical protein Csa_022680 [Cucumis sativus]	[more]
KAA0054379.1	2.33e-76	56.12	uncharacterized protein E6C27_scaffold24G001140 [Cucumis melo var. makuwa] >TYK1...	[more]
KAA0031967.1	3.17e-76	52.83	retrotransposon gag protein [Cucumis melo var. makuwa] >TYK16787.1 retrotranspos...	[more]
KAA0025369.1	4.74e-75	54.34	uncharacterized protein E6C27_scaffold1204G00530 [Cucumis melo var. makuwa] >TYK...	[more]
XP_031131881.1	3.04e-73	49.43	uncharacterized protein LOC116033267 [Ipomoea triloba]	[more]

BLAST of Chy1G009300 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 144..235 e-value: 9.0E-17 score: 61.1
None	No IPR available	PANTHER	PTHR24559:SF334	SUBFAMILY NOT NAMED	coord: 117..261
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 117..261

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy1G009300.1	Chy1G009300.1	mRNA