Chy1G009190 (gene) Cucumber (hystrix) v1

Overview


Name	Chy1G009190
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Mucin-2-like
Location	chrH01: 8584012 .. 8584883 (-)
RNA-Seq Expression	Chy1G009190
Synteny	Chy1G009190

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATACTACCATACACATCAAGCCAAAAATCAATGGATTTATTCCAGTTGAGGTATGGATCCCATCCACCTACTCCTCATCTTTCTCCATCCACATTGACCCTTTCTTGGCTACTTGATCCATGGAATCATAACACCGACTAAATTGTACGTAGTCATTCAGAGAGGATGTCTAGATTCAACCTAAATCGAACAAAGTCCAAGCATAAAATGACAAATGAATTTGAAGTTATCGTTGCTGCACCCATACCTTCAACCCCATTAGACAATTTAGTCGGCGGTATGGTTCCATGGACCCATACCTTTGGCCCCAGTCCCACTGGACAAAAATCCCACTTCTCCACCCAAAATTCCTCTGCCACCACCTCCTCGTTCTTCACCCACCCCTCCACTTACTCGAGCTTCACCCACCTCCACGCCTACATCTCAACATGGCCTACCTCCATCCAACTCCACGCCTGCAACCCCACAAGTTCCATCTCCTCAGGACTTTTCAATAGACCCACCATTAACCACAAATAACCAAAAGCCCAACACAACAAAATACCCAACTGCCCCACCAGAAAACCAAACCATCAACCCACTACAAAGACCCAACTCAATACCGAACACTGACCTAGCCCCAATTTCAACCCAGCTCGACATAACTCTCCCCAAACTACCAACCGATACCACATCAGACAATTACCTTTTGAGTCCCCTACCTCTCAATGTTGCTCCACCAGCCTCTCCTCCTCCCACACCCCTCATGTTACAGGACACTATCATTGGACAAGCTATGGTTGAAGGCGAAGCAGCTACAACTCCTAACCCCATCAATATCTCAACTCCTCACCCAGAATCTGATTGCGAAGAGGGACCAGAAGACTGA

mRNA sequence

ATGGATACTACCATACACATCAAGCCAAAAATCAATGGATTTATTCCAGTTGAGTCGGCGGTATGGTTCCATGGACCCATACCTTTGGCCCCAGTCCCACTGGACAAAAATCCCACTTCTCCACCCAAAATTCCTCTGCCACCACCTCCTCGTTCTTCACCCACCCCTCCACTTACTCGAGCTTCACCCACCTCCACGCCTACATCTCAACATGGCCTACCTCCATCCAACTCCACGCCTGCAACCCCACAAGTTCCATCTCCTCAGGACTTTTCAATAGACCCACCATTAACCACAAATAACCAAAAGCCCAACACAACAAAATACCCAACTGCCCCACCAGAAAACCAAACCATCAACCCACTACAAAGACCCAACTCAATACCGAACACTGACCTAGCCCCAATTTCAACCCAGCTCGACATAACTCTCCCCAAACTACCAACCGATACCACATCAGACAATTACCTTTTGAGTCCCCTACCTCTCAATGTTGCTCCACCAGCCTCTCCTCCTCCCACACCCCTCATGTTACAGGACACTATCATTGGACAAGCTATGGTTGAAGGCGAAGCAGCTACAACTCCTAACCCCATCAATATCTCAACTCCTCACCCAGAATCTGATTGCGAAGAGGGACCAGAAGACTGA

Coding sequence (CDS)

ATGGATACTACCATACACATCAAGCCAAAAATCAATGGATTTATTCCAGTTGAGTCGGCGGTATGGTTCCATGGACCCATACCTTTGGCCCCAGTCCCACTGGACAAAAATCCCACTTCTCCACCCAAAATTCCTCTGCCACCACCTCCTCGTTCTTCACCCACCCCTCCACTTACTCGAGCTTCACCCACCTCCACGCCTACATCTCAACATGGCCTACCTCCATCCAACTCCACGCCTGCAACCCCACAAGTTCCATCTCCTCAGGACTTTTCAATAGACCCACCATTAACCACAAATAACCAAAAGCCCAACACAACAAAATACCCAACTGCCCCACCAGAAAACCAAACCATCAACCCACTACAAAGACCCAACTCAATACCGAACACTGACCTAGCCCCAATTTCAACCCAGCTCGACATAACTCTCCCCAAACTACCAACCGATACCACATCAGACAATTACCTTTTGAGTCCCCTACCTCTCAATGTTGCTCCACCAGCCTCTCCTCCTCCCACACCCCTCATGTTACAGGACACTATCATTGGACAAGCTATGGTTGAAGGCGAAGCAGCTACAACTCCTAACCCCATCAATATCTCAACTCCTCACCCAGAATCTGATTGCGAAGAGGGACCAGAAGACTGA

Protein sequence

MDTTIHIKPKINGFIPVESAVWFHGPIPLAPVPLDKNPTSPPKIPLPPPPRSSPTPPLTRASPTSTPTSQHGLPPSNSTPATPQVPSPQDFSIDPPLTTNNQKPNTTKYPTAPPENQTINPLQRPNSIPNTDLAPISTQLDITLPKLPTDTTSDNYLLSPLPLNVAPPASPPPTPLMLQDTIIGQAMVEGEAATTPNPINISTPHPESDCEEGPED*

Homology

[Close]

BLAST of Chy1G009190 vs. ExPASy TrEMBL
Match: A0A673ZMQ5 (Mucin-2-like OS=Salmo trutta OX=8032 GN=LOC115193069 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 4.3e-04
Identity = 63/206 (30.58%), Postives = 78/206 (37.86%), Query Frame = 0


Query: 3    TTIHIKPKINGFIPVESAVWFHGPIPLAPVPLDKNPTSPPKIPLPPPPRSSPTPPLTRAS 62
            TT  I P     IP  +      P    P+P    PT        PPP ++PTPP T  +
Sbjct: 2370 TTTPIPPTTTTPIPPTTTTTPIPPTTTTPIPTTTTPT--------PPPTTTPTPPTTTTT 2429

Query: 63   PTSTPTSQHGLPPSNSTPATPQVPSPQDFSIDPPL--TTNNQKPNTTKYPTAPPENQTIN 122
                PT+   +PP  STP  P   +P   +   P+  TT    P TT  P  P     I 
Sbjct: 2430 TPIPPTTTTPIPPPTSTPIPPTTTTPITTTTTTPIPTTTTTPIPPTTTTPLPPTTTTPIP 2489

Query: 123  PLQRPNSIPNTDLAPISTQLDITLPKLPTDTTSDNYLLSPLPLNVAPPASPPPTPLMLQD 182
            P      IP T   PI+T    T P  PTDTT      +P+P    P  + P  P     
Sbjct: 2490 PTTTTTPIPPTTTTPITT---TTTPTPPTDTTPIPTTTTPIPPPTQPTTTTPTPP----- 2548

Query: 183  TIIGQAMVEGEAATTPNPINISTPHP 207
                         TTP P   +TP P
Sbjct: 2550 -----------TTTTPIPPTTTTPIP 2548

[Close]

BLAST of Chy1G009190 vs. ExPASy TrEMBL
Match: A0A673ZPW1 (Mucin-2-like OS=Salmo trutta OX=8032 GN=LOC115193069 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 4.3e-04
Identity = 63/206 (30.58%), Postives = 78/206 (37.86%), Query Frame = 0


Query: 3    TTIHIKPKINGFIPVESAVWFHGPIPLAPVPLDKNPTSPPKIPLPPPPRSSPTPPLTRAS 62
            TT  I P     IP  +      P    P+P    PT        PPP ++PTPP T  +
Sbjct: 2370 TTTPIPPTTTTPIPPTTTTTPIPPTTTTPIPTTTTPT--------PPPTTTPTPPTTTTT 2429

Query: 63   PTSTPTSQHGLPPSNSTPATPQVPSPQDFSIDPPL--TTNNQKPNTTKYPTAPPENQTIN 122
                PT+   +PP  STP  P   +P   +   P+  TT    P TT  P  P     I 
Sbjct: 2430 TPIPPTTTTPIPPPTSTPIPPTTTTPITTTTTTPIPTTTTTPIPPTTTTPLPPTTTTPIP 2489

Query: 123  PLQRPNSIPNTDLAPISTQLDITLPKLPTDTTSDNYLLSPLPLNVAPPASPPPTPLMLQD 182
            P      IP T   PI+T    T P  PTDTT      +P+P    P  + P  P     
Sbjct: 2490 PTTTTTPIPPTTTTPITT---TTTPTPPTDTTPIPTTTTPIPPPTQPTTTTPTPP----- 2548

Query: 183  TIIGQAMVEGEAATTPNPINISTPHP 207
                         TTP P   +TP P
Sbjct: 2550 -----------TTTTPIPPTTTTPIP 2548

[Close]

BLAST of Chy1G009190 vs. ExPASy TrEMBL
Match: A0A673ZRG8 (Mucin-2-like OS=Salmo trutta OX=8032 GN=LOC115193069 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 4.3e-04
Identity = 63/206 (30.58%), Postives = 78/206 (37.86%), Query Frame = 0


Query: 3    TTIHIKPKINGFIPVESAVWFHGPIPLAPVPLDKNPTSPPKIPLPPPPRSSPTPPLTRAS 62
            TT  I P     IP  +      P    P+P    PT        PPP ++PTPP T  +
Sbjct: 2370 TTTPIPPTTTTPIPPTTTTTPIPPTTTTPIPTTTTPT--------PPPTTTPTPPTTTTT 2429

Query: 63   PTSTPTSQHGLPPSNSTPATPQVPSPQDFSIDPPL--TTNNQKPNTTKYPTAPPENQTIN 122
                PT+   +PP  STP  P   +P   +   P+  TT    P TT  P  P     I 
Sbjct: 2430 TPIPPTTTTPIPPPTSTPIPPTTTTPITTTTTTPIPTTTTTPIPPTTTTPLPPTTTTPIP 2489

Query: 123  PLQRPNSIPNTDLAPISTQLDITLPKLPTDTTSDNYLLSPLPLNVAPPASPPPTPLMLQD 182
            P      IP T   PI+T    T P  PTDTT      +P+P    P  + P  P     
Sbjct: 2490 PTTTTTPIPPTTTTPITT---TTTPTPPTDTTPIPTTTTPIPPPTQPTTTTPTPP----- 2548

Query: 183  TIIGQAMVEGEAATTPNPINISTPHP 207
                         TTP P   +TP P
Sbjct: 2550 -----------TTTTPIPPTTTTPIP 2548

[Close]

BLAST of Chy1G009190 vs. ExPASy TrEMBL
Match: A0A673ZPW8 (Mucin-2-like OS=Salmo trutta OX=8032 GN=LOC115193069 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 4.3e-04
Identity = 63/206 (30.58%), Postives = 78/206 (37.86%), Query Frame = 0


Query: 3    TTIHIKPKINGFIPVESAVWFHGPIPLAPVPLDKNPTSPPKIPLPPPPRSSPTPPLTRAS 62
            TT  I P     IP  +      P    P+P    PT        PPP ++PTPP T  +
Sbjct: 2370 TTTPIPPTTTTPIPPTTTTTPIPPTTTTPIPTTTTPT--------PPPTTTPTPPTTTTT 2429

Query: 63   PTSTPTSQHGLPPSNSTPATPQVPSPQDFSIDPPL--TTNNQKPNTTKYPTAPPENQTIN 122
                PT+   +PP  STP  P   +P   +   P+  TT    P TT  P  P     I 
Sbjct: 2430 TPIPPTTTTPIPPPTSTPIPPTTTTPITTTTTTPIPTTTTTPIPPTTTTPLPPTTTTPIP 2489

Query: 123  PLQRPNSIPNTDLAPISTQLDITLPKLPTDTTSDNYLLSPLPLNVAPPASPPPTPLMLQD 182
            P      IP T   PI+T    T P  PTDTT      +P+P    P  + P  P     
Sbjct: 2490 PTTTTTPIPPTTTTPITT---TTTPTPPTDTTPIPTTTTPIPPPTQPTTTTPTPP----- 2548

Query: 183  TIIGQAMVEGEAATTPNPINISTPHP 207
                         TTP P   +TP P
Sbjct: 2550 -----------TTTTPIPPTTTTPIP 2548

[Close]

BLAST of Chy1G009190 vs. TAIR 10
Match: AT4G22505.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 41.6 bits (96), Expect = 9.5e-04
Identity = 53/146 (36.30%), Postives = 65/146 (44.52%), Query Frame = 0


Query: 31  PVPLDKN-PTSPPKIPLPPPPRSSPTPPLTRASPTSTPTSQHGLPPSNSTPATPQVPSPQ 90
           P+P  +  PTSPP  PL PPPRS P PP TR  P S PTS    PP     A P  P PQ
Sbjct: 320 PMPPPRTPPTSPPLSPLSPPPRSPPMPP-TRTPPVSPPTSPSRTPPVTPPRAPPTAP-PQ 379

Query: 91  DFSIDPPLTTNNQKPNTTKYPTAPPENQTINPLQRPNSIPNTDLAPISTQLDITLPKLPT 150
              + PP+   N  P   + P +PP     +P + P   P     PI+    I+ P+ P 
Sbjct: 380 TPPVSPPIVPPNSPPK--RPPMSPPITPPTSPPRAPPQSP-----PITP--PISPPRAPP 439

Query: 151 DTTSDNYLLSPLPLNVAPPASPPPTP 176
                       P    PP +PPP P
Sbjct: 440 TPPG-------TPSVPPPPRTPPPPP 447

The following BLAST results are available for this feature:

BLAST of Chy1G009190 vs.


Match Name	E-value	Identity	Description

BLAST of Chy1G009190 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A673ZMQ5	4.3e-04	30.58	Mucin-2-like OS=Salmo trutta OX=8032 GN=LOC115193069 PE=4 SV=1	[more]
A0A673ZPW1	4.3e-04	30.58	Mucin-2-like OS=Salmo trutta OX=8032 GN=LOC115193069 PE=4 SV=1	[more]
A0A673ZRG8	4.3e-04	30.58	Mucin-2-like OS=Salmo trutta OX=8032 GN=LOC115193069 PE=4 SV=1	[more]
A0A673ZPW8	4.3e-04	30.58	Mucin-2-like OS=Salmo trutta OX=8032 GN=LOC115193069 PE=4 SV=1	[more]

BLAST of Chy1G009190 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

BLAST of Chy1G009190 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G22505.1	9.5e-04	36.30	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..134
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..61
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..134
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 191..216

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy1G009190.1	Chy1G009190.1	mRNA