Chy1G008310 (gene) Cucumber (hystrix) v1

Overview


Name	Chy1G008310
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	zinc finger CCCH domain-containing protein 37
Location	chrH01: 7081244 .. 7081414 (-)
RNA-Seq Expression	Chy1G008310
Synteny	Chy1G008310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGGCCATAATTTGTCCATATTATCTTAAAACTGGTACATGCAAGTATGGCACTACTTGCAAATTTGACCATCCACCTCCTGGAGAAGTGATGACAATGGCTGCAGTACAATCTGCTCCAGGAAAAGAAGGCGAAGATCGGATAGATGAATCAGTGGACGAACGGCTGTAG

mRNA sequence

GAGGCCATAATTTGTCCATATTATCTTAAAACTGGTACATGCAAGTATGGCACTACTTGCAAATTTGACCATCCACCTCCTGGAGAAGTGATGACAATGGCTGCAGTACAATCTGCTCCAGGAAAAGAAGGCGAAGATCGGATAGATGAATCAGTGGACGAACGGCTGTAG

Coding sequence (CDS)

GAGGCCATAATTTGTCCATATTATCTTAAAACTGGTACATGCAAGTATGGCACTACTTGCAAATTTGACCATCCACCTCCTGGAGAAGTGATGACAATGGCTGCAGTACAATCTGCTCCAGGAAAAGAAGGCGAAGATCGGATAGATGAATCAGTGGACGAACGGCTGTAG

Protein sequence

EAIICPYYLKTGTCKYGTTCKFDHPPPGEVMTMAAVQSAPGKEGEDRIDESVDERL*

Homology

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BLAST of Chy1G008310 vs. ExPASy Swiss-Prot
Match: Q941Q3 (Zinc finger CCCH domain-containing protein 37 OS=Arabidopsis thaliana OX=3702 GN=HUA1 PE=1 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 4.6e-11
Identity = 26/30 (86.67%), Postives = 28/30 (93.33%), Query Frame = 0


Query: 2   AIICPYYLKTGTCKYGTTCKFDHPPPGEVM 32
           A+ CPYY+KTGTCKYG TCKFDHPPPGEVM
Sbjct: 476 ALNCPYYMKTGTCKYGATCKFDHPPPGEVM 505

[Close]

BLAST of Chy1G008310 vs. ExPASy Swiss-Prot
Match: Q5ZDJ6 (Zinc finger CCCH domain-containing protein 8 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0616400 PE=2 SV=2)

HSP 1 Score: 54.7 bits (130), Expect = 4.0e-07
Identity = 18/31 (58.06%), Postives = 25/31 (80.65%), Query Frame = 0


Query: 1   EAIICPYYLKTGTCKYGTTCKFDHPPPGEVM 32
           +A++C +Y+KTG CK+G  CKFDHPPP E +
Sbjct: 424 DAVVCAFYMKTGVCKFGMQCKFDHPPPQEAI 454

[Close]

BLAST of Chy1G008310 vs. ExPASy Swiss-Prot
Match: Q5NAV3 (Zinc finger CCCH domain-containing protein 5 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0257400 PE=2 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 1.3e-05
Identity = 20/43 (46.51%), Postives = 27/43 (62.79%), Query Frame = 0


Query: 4   ICPYYLKTGTCKYGTTCKFDHPPPGEVMTMAAVQSA-PGKEGE 46
           +C YY+K GTCK+G+ CK+DHP  G V  +    S  P + GE
Sbjct: 106 VCEYYMKNGTCKFGSNCKYDHPREGSVQAVMLNSSGYPLRSGE 148

[Close]

BLAST of Chy1G008310 vs. ExPASy Swiss-Prot
Match: Q2R4J4 (Zinc finger CCCH domain-containing protein 63 OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0472000 PE=2 SV=2)

HSP 1 Score: 49.3 bits (116), Expect = 1.7e-05
Identity = 21/41 (51.22%), Postives = 27/41 (65.85%), Query Frame = 0


Query: 5   CPYYLKTGTCKYGTTCKFDHPPPGEVMTMAAVQSAPGKEGE 46
           C YYL+TG CK+G+TCKF HP P    TM AV+ +    G+
Sbjct: 153 CAYYLRTGQCKFGSTCKFHHPQPSN--TMVAVRGSVYSPGQ 191

[Close]

BLAST of Chy1G008310 vs. ExPASy Swiss-Prot
Match: Q2QTY2 (Zinc finger CCCH domain-containing protein 65 OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0278800 PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 1.7e-05
Identity = 17/26 (65.38%), Postives = 20/26 (76.92%), Query Frame = 0


Query: 5   CPYYLKTGTCKYGTTCKFDHPPPGEV 31
           CPYY++TG+CKY T CKF HP P  V
Sbjct: 291 CPYYMRTGSCKYATNCKFHHPDPSNV 316

[Close]

BLAST of Chy1G008310 vs. ExPASy TrEMBL
Match: A0A5A7VAA0 (Zinc finger CCCH domain-containing protein 37 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold357G00470 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 3.4e-25
Identity = 55/56 (98.21%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1   EAIICPYYLKTGTCKYGTTCKFDHPPPGEVMTMAAVQSAPGKEGEDRIDESVDERL 57
           EAIICPYYLKTGTCKYGTTCKFDHPPPGEVMTMAA+QSAPGKEGEDRIDESVDERL
Sbjct: 470 EAIICPYYLKTGTCKYGTTCKFDHPPPGEVMTMAAIQSAPGKEGEDRIDESVDERL 525

[Close]

BLAST of Chy1G008310 vs. ExPASy TrEMBL
Match: A0A1S3BGI6 (zinc finger CCCH domain-containing protein 37 OS=Cucumis melo OX=3656 GN=LOC103489619 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 3.4e-25
Identity = 55/56 (98.21%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1   EAIICPYYLKTGTCKYGTTCKFDHPPPGEVMTMAAVQSAPGKEGEDRIDESVDERL 57
           EAIICPYYLKTGTCKYGTTCKFDHPPPGEVMTMAA+QSAPGKEGEDRIDESVDERL
Sbjct: 471 EAIICPYYLKTGTCKYGTTCKFDHPPPGEVMTMAAIQSAPGKEGEDRIDESVDERL 526

[Close]

BLAST of Chy1G008310 vs. ExPASy TrEMBL
Match: A0A6J1HW69 (zinc finger CCCH domain-containing protein 37 OS=Cucurbita maxima OX=3661 GN=LOC111468399 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.4e-18
Identity = 43/50 (86.00%), Postives = 46/50 (92.00%), Query Frame = 0


Query: 1   EAIICPYYLKTGTCKYGTTCKFDHPPPGEVMTMAAVQSAPGKEGEDRIDE 51
           +AIICPYYLKTGTCKYG+TCKFDHPPPGEVM M AVQ  PGKEGE+RIDE
Sbjct: 454 DAIICPYYLKTGTCKYGSTCKFDHPPPGEVMAMVAVQLVPGKEGEERIDE 503

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BLAST of Chy1G008310 vs. ExPASy TrEMBL
Match: A0A6J1GM64 (zinc finger CCCH domain-containing protein 37 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111455230 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.4e-18
Identity = 43/50 (86.00%), Postives = 46/50 (92.00%), Query Frame = 0


Query: 1   EAIICPYYLKTGTCKYGTTCKFDHPPPGEVMTMAAVQSAPGKEGEDRIDE 51
           +AIICPYYLKTGTCKYG+TCKFDHPPPGEVM M AVQ  PGKEGE+RIDE
Sbjct: 454 DAIICPYYLKTGTCKYGSTCKFDHPPPGEVMAMVAVQLVPGKEGEERIDE 503

[Close]

BLAST of Chy1G008310 vs. ExPASy TrEMBL
Match: A0A6J1GM41 (zinc finger CCCH domain-containing protein 37 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111455230 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.4e-18
Identity = 43/50 (86.00%), Postives = 46/50 (92.00%), Query Frame = 0


Query: 1   EAIICPYYLKTGTCKYGTTCKFDHPPPGEVMTMAAVQSAPGKEGEDRIDE 51
           +AIICPYYLKTGTCKYG+TCKFDHPPPGEVM M AVQ  PGKEGE+RIDE
Sbjct: 474 DAIICPYYLKTGTCKYGSTCKFDHPPPGEVMAMVAVQLVPGKEGEERIDE 523

[Close]

BLAST of Chy1G008310 vs. NCBI nr
Match: XP_011659059.1 (zinc finger CCCH domain-containing protein 37 isoform X5 [Cucumis sativus])

HSP 1 Score: 122 bits (306), Expect = 2.76e-31
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1   EAIICPYYLKTGTCKYGTTCKFDHPPPGEVMTMAAVQSAPGKEGEDRIDESVDERL 56
           EAIICPYYLKTGTCKYGTTCKFDHPPPGEVMTMAAVQSAPGKEGEDRIDESVDERL
Sbjct: 378 EAIICPYYLKTGTCKYGTTCKFDHPPPGEVMTMAAVQSAPGKEGEDRIDESVDERL 433

[Close]

BLAST of Chy1G008310 vs. NCBI nr
Match: XP_031744500.1 (zinc finger CCCH domain-containing protein 37 isoform X4 [Cucumis sativus])

HSP 1 Score: 122 bits (306), Expect = 4.36e-31
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1   EAIICPYYLKTGTCKYGTTCKFDHPPPGEVMTMAAVQSAPGKEGEDRIDESVDERL 56
           EAIICPYYLKTGTCKYGTTCKFDHPPPGEVMTMAAVQSAPGKEGEDRIDESVDERL
Sbjct: 418 EAIICPYYLKTGTCKYGTTCKFDHPPPGEVMTMAAVQSAPGKEGEDRIDESVDERL 473

[Close]

BLAST of Chy1G008310 vs. NCBI nr
Match: XP_031744498.1 (zinc finger CCCH domain-containing protein 37 isoform X2 [Cucumis sativus])

HSP 1 Score: 122 bits (306), Expect = 5.99e-31
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1   EAIICPYYLKTGTCKYGTTCKFDHPPPGEVMTMAAVQSAPGKEGEDRIDESVDERL 56
           EAIICPYYLKTGTCKYGTTCKFDHPPPGEVMTMAAVQSAPGKEGEDRIDESVDERL
Sbjct: 452 EAIICPYYLKTGTCKYGTTCKFDHPPPGEVMTMAAVQSAPGKEGEDRIDESVDERL 507

[Close]

BLAST of Chy1G008310 vs. NCBI nr
Match: XP_004148293.1 (zinc finger CCCH domain-containing protein 37 isoform X1 [Cucumis sativus] >KAE8646123.1 hypothetical protein Csa_016154 [Cucumis sativus])

HSP 1 Score: 122 bits (306), Expect = 7.01e-31
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1   EAIICPYYLKTGTCKYGTTCKFDHPPPGEVMTMAAVQSAPGKEGEDRIDESVDERL 56
           EAIICPYYLKTGTCKYGTTCKFDHPPPGEVMTMAAVQSAPGKEGEDRIDESVDERL
Sbjct: 472 EAIICPYYLKTGTCKYGTTCKFDHPPPGEVMTMAAVQSAPGKEGEDRIDESVDERL 527

[Close]

BLAST of Chy1G008310 vs. NCBI nr
Match: KAA0062825.1 (zinc finger CCCH domain-containing protein 37 [Cucumis melo var. makuwa])

HSP 1 Score: 122 bits (305), Expect = 9.56e-31
Identity = 55/56 (98.21%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1   EAIICPYYLKTGTCKYGTTCKFDHPPPGEVMTMAAVQSAPGKEGEDRIDESVDERL 56
           EAIICPYYLKTGTCKYGTTCKFDHPPPGEVMTMAA+QSAPGKEGEDRIDESVDERL
Sbjct: 470 EAIICPYYLKTGTCKYGTTCKFDHPPPGEVMTMAAIQSAPGKEGEDRIDESVDERL 525

[Close]

BLAST of Chy1G008310 vs. TAIR 10
Match: AT3G12680.1 (floral homeotic protein (HUA1) )

HSP 1 Score: 67.8 bits (164), Expect = 3.3e-12
Identity = 26/30 (86.67%), Postives = 28/30 (93.33%), Query Frame = 0


Query: 2   AIICPYYLKTGTCKYGTTCKFDHPPPGEVM 32
           A+ CPYY+KTGTCKYG TCKFDHPPPGEVM
Sbjct: 476 ALNCPYYMKTGTCKYGATCKFDHPPPGEVM 505

[Close]

BLAST of Chy1G008310 vs. TAIR 10
Match: AT2G47850.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 48.9 bits (115), Expect = 1.6e-06
Identity = 20/36 (55.56%), Postives = 21/36 (58.33%), Query Frame = 0


Query: 5   CPYYLKTGTCKYGTTCKFDHPPPGEVMTMAAVQSAP 41
           C YYLKTG CK+G TCKF HP P          SAP
Sbjct: 142 CSYYLKTGQCKFGITCKFHHPQPAGTTVPPPPASAP 177

[Close]

BLAST of Chy1G008310 vs. TAIR 10
Match: AT2G47850.3 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 48.9 bits (115), Expect = 1.6e-06
Identity = 20/36 (55.56%), Postives = 21/36 (58.33%), Query Frame = 0


Query: 5   CPYYLKTGTCKYGTTCKFDHPPPGEVMTMAAVQSAP 41
           C YYLKTG CK+G TCKF HP P          SAP
Sbjct: 142 CSYYLKTGQCKFGITCKFHHPQPAGTTVPPPPASAP 177

[Close]

BLAST of Chy1G008310 vs. TAIR 10
Match: AT1G04990.2 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 47.8 bits (112), Expect = 3.5e-06
Identity = 16/23 (69.57%), Postives = 19/23 (82.61%), Query Frame = 0


Query: 5   CPYYLKTGTCKYGTTCKFDHPPP 28
           CPYYL+TGTC++G  CKF HP P
Sbjct: 141 CPYYLRTGTCRFGVACKFHHPQP 163

[Close]

BLAST of Chy1G008310 vs. TAIR 10
Match: AT1G04990.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 47.8 bits (112), Expect = 3.5e-06
Identity = 16/23 (69.57%), Postives = 19/23 (82.61%), Query Frame = 0


Query: 5   CPYYLKTGTCKYGTTCKFDHPPP 28
           CPYYL+TGTC++G  CKF HP P
Sbjct: 141 CPYYLRTGTCRFGVACKFHHPQP 163

The following BLAST results are available for this feature:

BLAST of Chy1G008310 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q941Q3	4.6e-11	86.67	Zinc finger CCCH domain-containing protein 37 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q5ZDJ6	4.0e-07	58.06	Zinc finger CCCH domain-containing protein 8 OS=Oryza sativa subsp. japonica OX=...	[more]
Q5NAV3	1.3e-05	46.51	Zinc finger CCCH domain-containing protein 5 OS=Oryza sativa subsp. japonica OX=...	[more]
Q2R4J4	1.7e-05	51.22	Zinc finger CCCH domain-containing protein 63 OS=Oryza sativa subsp. japonica OX...	[more]
Q2QTY2	1.7e-05	65.38	Zinc finger CCCH domain-containing protein 65 OS=Oryza sativa subsp. japonica OX...	[more]

BLAST of Chy1G008310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VAA0	3.4e-25	98.21	Zinc finger CCCH domain-containing protein 37 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A1S3BGI6	3.4e-25	98.21	zinc finger CCCH domain-containing protein 37 OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A6J1HW69	1.4e-18	86.00	zinc finger CCCH domain-containing protein 37 OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1GM64	1.4e-18	86.00	zinc finger CCCH domain-containing protein 37 isoform X2 OS=Cucurbita moschata O...	[more]
A0A6J1GM41	1.4e-18	86.00	zinc finger CCCH domain-containing protein 37 isoform X1 OS=Cucurbita moschata O...	[more]

BLAST of Chy1G008310 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011659059.1	2.76e-31	100.00	zinc finger CCCH domain-containing protein 37 isoform X5 [Cucumis sativus]	[more]
XP_031744500.1	4.36e-31	100.00	zinc finger CCCH domain-containing protein 37 isoform X4 [Cucumis sativus]	[more]
XP_031744498.1	5.99e-31	100.00	zinc finger CCCH domain-containing protein 37 isoform X2 [Cucumis sativus]	[more]
XP_004148293.1	7.01e-31	100.00	zinc finger CCCH domain-containing protein 37 isoform X1 [Cucumis sativus] >KAE8...	[more]
KAA0062825.1	9.56e-31	98.21	zinc finger CCCH domain-containing protein 37 [Cucumis melo var. makuwa]	[more]

BLAST of Chy1G008310 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G12680.1	3.3e-12	86.67	floral homeotic protein (HUA1)	[more]
AT2G47850.1	1.6e-06	55.56	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT2G47850.3	1.6e-06	55.56	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT1G04990.2	3.5e-06	69.57	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT1G04990.1	3.5e-06	69.57	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 1..26 e-value: 5.0E-4 score: 29.4
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 4..26 e-value: 2.7E-11 score: 43.1
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 1..27 score: 15.12171
None	No IPR available	GENE3D	4.10.1000.10		coord: 1..51 e-value: 2.6E-8 score: 35.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..56
IPR036855	Zinc finger, CCCH-type superfamily	SUPERFAMILY	90229	CCCH zinc finger	coord: 3..26

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy1G008310.1	Chy1G008310.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003729	mRNA binding