Chy1G007680 (gene) Cucumber (hystrix) v1

Overview


Name	Chy1G007680
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Girdin-like
Location	chrH01: 5839422 .. 5839832 (+)
RNA-Seq Expression	Chy1G007680
Synteny	Chy1G007680

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGTTTGGGACCCAACATATCCAAGTAAAGAGACTTGGTTGTCTTTCTTTTCAACAATGAGTTTCGAAAATGTCATATGGAAGGCTCAATGGATGCCTTTGAAGGCAGTGATTTATAGATGTGGAGATTTTCATAATGTGCCTTTGTTGGGACCATGGGGTGGTGTTAATAATACACCATTGTTAGTTTTGCGTTAGGTGTGGCTCAAACAGTTTATACCACCAACTCATAATCTAAAAGACTCTGAATTTTTATACAATCTTGAAGACTGTTAACGAAAAAAACGTTGAGCAGTATGTGCATGGAAGTCTCTGAGGAAGATAAAAGACGAAGGATAATCTGAAGGAGTTACCAGTGGATATGAGGCATGGCAGGCAAACAGAAGGAACAATGTAATAGATACCTTA

mRNA sequence

ATGGCAGTTTGGGACCCAACATATCCAAGTAAAGAGACTTGGTTGTCTTTCTTTTCAACAATGAGTTTCGAAAATGTCATATGGAAGGCTCAATGGATGCCTTTGAAGGCAGTGATTTATAGATGTGGAGATTTTCATAATGTGCCTTTGTTGGGACCATGGGGTGGTGTTAATAATACACCATTGTTAGTTTTGCGTTAGGTGTGGCTCAAACAGTTTATACCACCAACTCATAATCTAAAAGACTCTGAATTTTTATACAATCTTGAAGACTGTTAACGAAAAAAACGTTGAGCAGTATGTGCATGGAAGTCTCTGAGGAAGATAAAAGACGAAGGATAATCTGAAGGAGTTACCAGTGGATATGAGGCATGGCAGGCAAACAGAAGGAACAATGTAATAGATACCTTA

Coding sequence (CDS)

ATGGCAGTTTGGGACCCAACATATCCAAGTAAAGAGACTTGGTTGTCTTTCTTTTCAACAATGAGTTTCGAAAATGTCATATGGAAGGCTCAATGGATGCCTTTGAAGGCAGTGATTTATAGATGTGGAGATTTTCATAATGTGCCTTTGTTGGGACCATGGGGTGGTGTTAATAATACACCATTGTTAGTTTTGCGTTAGGTGTGGCTCAAACAGTTTATACCACCAACTCATAATCTAAAAGACTCTGAATTTTTATACAATCTTGAAGACTGTTAACGAAAAAAACGTTGAGCAGTATGTGCATGGAAGTCTCTGAGGAAGATAAAAGACGAAGGATAATCTGAAGGAGTTACCAGTGGATATGAGGCATGGCAGGCAAACAGAAGGAACAATGTAATAGATACCTTA

Protein sequence

MAVWDPTYPSKETWLSFFSTMSFENVIWKAQWMPLKAVIYRCGDFHNVPLLGPWGGVNNTPLLVLR*VWLKQFIPPTHNLKDSEFLYNLEDC*RKKR*AVCAWKSLRKIKDEG*SEGVTSGYEAWQANRRNNVIDTL

Homology

[Close]

BLAST of Chy1G007680 vs. ExPASy TrEMBL
Match: A0A5A7T5S7 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00170 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 9.9e-63
Identity = 110/135 (81.48%), Postives = 121/135 (89.63%), Query Frame = 0


Query: 1   MAVWDPTYPSKETWLSFFSTMSFENVIWKAQWMPLKAVIYRCGDFHNVPLLGPWGGVNNT 60
           MAVWDPTYP KE WLSFF+ ++ ENVIWKAQWMPLKAVIYRCGDFH+VPLLGPWGGVN T
Sbjct: 266 MAVWDPTYPRKEAWLSFFAKLTSENVIWKAQWMPLKAVIYRCGDFHSVPLLGPWGGVNYT 325

Query: 61  PLLVLR*VWLKQFIPPTHNLKDSEFLYNLEDC*RKKR*AVCAWKSLRKIKDEG*SEGVTS 120
           PLLVLR VWLKQFIPPTHNL++S+F Y+ EDC  KKR AVCAWKS+RKIKD+G  EGVTS
Sbjct: 326 PLLVLRQVWLKQFIPPTHNLQESDFSYDPEDCQGKKRQAVCAWKSIRKIKDKGHYEGVTS 385

Query: 121 GYEAWQANRRNNVID 136
           GYEAWQANRR N+ID
Sbjct: 386 GYEAWQANRRKNIID 400

[Close]

BLAST of Chy1G007680 vs. ExPASy TrEMBL
Match: A0A5D3CZ50 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003770 PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 8.3e-62
Identity = 109/135 (80.74%), Postives = 120/135 (88.89%), Query Frame = 0


Query: 1   MAVWDPTYPSKETWLSFFSTMSFENVIWKAQWMPLKAVIYRCGDFHNVPLLGPWGGVNNT 60
           MAVWD TYP KE WLSFF+ ++ ENVIWKAQWMPLKAVIYRCGDFH+VPLLGPWGGVN T
Sbjct: 1   MAVWDQTYPRKEAWLSFFAKLTSENVIWKAQWMPLKAVIYRCGDFHSVPLLGPWGGVNYT 60

Query: 61  PLLVLR*VWLKQFIPPTHNLKDSEFLYNLEDC*RKKR*AVCAWKSLRKIKDEG*SEGVTS 120
           PLLVLR VWLKQFIPPTHNL++S+F Y+ EDC  KKR AVCAWKS+RKIKD+G  EGVTS
Sbjct: 61  PLLVLRQVWLKQFIPPTHNLQESDFSYDPEDCQGKKRQAVCAWKSIRKIKDKGHYEGVTS 120

Query: 121 GYEAWQANRRNNVID 136
           GYEAWQANRR N+ID
Sbjct: 121 GYEAWQANRRKNIID 135

[Close]

BLAST of Chy1G007680 vs. ExPASy TrEMBL
Match: A0A5A7TNJ1 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002070 PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 8.3e-62
Identity = 109/135 (80.74%), Postives = 120/135 (88.89%), Query Frame = 0


Query: 1   MAVWDPTYPSKETWLSFFSTMSFENVIWKAQWMPLKAVIYRCGDFHNVPLLGPWGGVNNT 60
           MAVWD TYP KE WLSFF+ ++ ENVIWKAQWMPLKAVIYRCGDFH+VPLLGPWGGVN T
Sbjct: 110 MAVWDQTYPRKEAWLSFFAKLTSENVIWKAQWMPLKAVIYRCGDFHSVPLLGPWGGVNYT 169

Query: 61  PLLVLR*VWLKQFIPPTHNLKDSEFLYNLEDC*RKKR*AVCAWKSLRKIKDEG*SEGVTS 120
           PLLVLR VWLKQFIPPTHNL++S+F Y+ EDC  KKR AVCAWKS+RKIKD+G  EGVTS
Sbjct: 170 PLLVLRQVWLKQFIPPTHNLQESDFSYDPEDCQGKKRQAVCAWKSIRKIKDKGHYEGVTS 229

Query: 121 GYEAWQANRRNNVID 136
           GYEAWQANRR N+ID
Sbjct: 230 GYEAWQANRRKNIID 244

[Close]

BLAST of Chy1G007680 vs. ExPASy TrEMBL
Match: A0A5D3BYI1 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00630 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 2.4e-61
Identity = 108/135 (80.00%), Postives = 119/135 (88.15%), Query Frame = 0


Query: 1   MAVWDPTYPSKETWLSFFSTMSFENVIWKAQWMPLKAVIYRCGDFHNVPLLGPWGGVNNT 60
           MAVWDPTYP KE WLSFF+ ++ ENVIWKAQWMPLKAVIYRCGDFH+VPLLGPWGGVN T
Sbjct: 77  MAVWDPTYPRKEAWLSFFAKLTSENVIWKAQWMPLKAVIYRCGDFHSVPLLGPWGGVNYT 136

Query: 61  PLLVLR*VWLKQFIPPTHNLKDSEFLYNLEDC*RKKR*AVCAWKSLRKIKDEG*SEGVTS 120
           PLLVLR VWLKQFIPPTHNL++S+F Y+ EDC  KK  AVC WKS+RKIKD+G  EGVTS
Sbjct: 137 PLLVLRQVWLKQFIPPTHNLQESDFSYDPEDCQGKKCQAVCTWKSIRKIKDKGHYEGVTS 196

Query: 121 GYEAWQANRRNNVID 136
           GYEAWQANRR N+ID
Sbjct: 197 GYEAWQANRRKNIID 211

[Close]

BLAST of Chy1G007680 vs. ExPASy TrEMBL
Match: A0A5A7UL51 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold288G001430 PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 7.8e-60
Identity = 105/135 (77.78%), Postives = 117/135 (86.67%), Query Frame = 0


Query: 1   MAVWDPTYPSKETWLSFFSTMSFENVIWKAQWMPLKAVIYRCGDFHNVPLLGPWGGVNNT 60
           M VWDPTYP KE WLSFF+ ++ ENVIWKAQWMPLKA IYRC DFH+VPLLGPWGGVN T
Sbjct: 287 MTVWDPTYPRKEAWLSFFAKLTSENVIWKAQWMPLKAAIYRCEDFHSVPLLGPWGGVNYT 346

Query: 61  PLLVLR*VWLKQFIPPTHNLKDSEFLYNLEDC*RKKR*AVCAWKSLRKIKDEG*SEGVTS 120
           PLLVLR VWLKQFIPPT NL++S+F YN EDC  KKR AVCAWKS+RKIKD+G  EGVTS
Sbjct: 347 PLLVLRQVWLKQFIPPTQNLQESDFSYNPEDCQGKKRQAVCAWKSIRKIKDKGHCEGVTS 406

Query: 121 GYEAWQANRRNNVID 136
           GYEAW+AN+R N+ID
Sbjct: 407 GYEAWKANKRKNIID 421

[Close]

BLAST of Chy1G007680 vs. NCBI nr
Match: XP_031739496.1 (uncharacterized protein LOC116403043 [Cucumis sativus])

HSP 1 Score: 250 bits (639), Expect = 1.57e-80
Identity = 113/137 (82.48%), Postives = 123/137 (89.78%), Query Frame = 0


Query: 1   MAVWDPTYPSKETWLSFFSTMSFENVIWKAQWMPLKAVIYRCGDFHNVPLLGPWGGVNNT 60
           MAVW+PTYP KETW+SFFST+S E+VIWKAQWMPLKAVIYRCGDFH+VPLLGPWGGVN T
Sbjct: 116 MAVWNPTYPKKETWVSFFSTLSSEDVIWKAQWMPLKAVIYRCGDFHSVPLLGPWGGVNYT 175

Query: 61  PLLVLR*VWLKQFIPPTHNLKDSEFLYNLEDC*RKKR*AVCAWKSLRKIKDEG*SEGVTS 120
           PLLVLR VWLKQFIPPTHNL+DS+F Y+ EDC RKK  AVCAWKS+RKIKD+G  EGVTS
Sbjct: 176 PLLVLRQVWLKQFIPPTHNLQDSDFAYDHEDCQRKKHRAVCAWKSVRKIKDKGHYEGVTS 235

Query: 121 GYEAWQANRRNNVIDTL 137
           GYEAWQ NRR NVI TL
Sbjct: 236 GYEAWQTNRRKNVIYTL 252

[Close]

BLAST of Chy1G007680 vs. NCBI nr
Match: XP_031740432.1 (uncharacterized protein LOC116403430 [Cucumis sativus])

HSP 1 Score: 250 bits (639), Expect = 3.65e-80
Identity = 113/137 (82.48%), Postives = 123/137 (89.78%), Query Frame = 0


Query: 1   MAVWDPTYPSKETWLSFFSTMSFENVIWKAQWMPLKAVIYRCGDFHNVPLLGPWGGVNNT 60
           MAVW+PTYP KETW+SFFST+S E+VIWKAQWMPLKAVIYRCGDFH+VPLLGPWGGVN T
Sbjct: 115 MAVWNPTYPKKETWVSFFSTLSSEDVIWKAQWMPLKAVIYRCGDFHSVPLLGPWGGVNYT 174

Query: 61  PLLVLR*VWLKQFIPPTHNLKDSEFLYNLEDC*RKKR*AVCAWKSLRKIKDEG*SEGVTS 120
           PLLVLR VWLKQFIPPTHNL+DS+F Y+ EDC RKK  AVCAWKS+RKIKD+G  EGVTS
Sbjct: 175 PLLVLRQVWLKQFIPPTHNLQDSDFAYDHEDCQRKKHRAVCAWKSVRKIKDKGHYEGVTS 234

Query: 121 GYEAWQANRRNNVIDTL 137
           GYEAWQ NRR NVI TL
Sbjct: 235 GYEAWQTNRRKNVIYTL 251

[Close]

BLAST of Chy1G007680 vs. NCBI nr
Match: TYK16558.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 244 bits (622), Expect = 2.79e-79
Identity = 109/135 (80.74%), Postives = 120/135 (88.89%), Query Frame = 0


Query: 1   MAVWDPTYPSKETWLSFFSTMSFENVIWKAQWMPLKAVIYRCGDFHNVPLLGPWGGVNNT 60
           MAVWD TYP KE WLSFF+ ++ ENVIWKAQWMPLKAVIYRCGDFH+VPLLGPWGGVN T
Sbjct: 1   MAVWDQTYPRKEAWLSFFAKLTSENVIWKAQWMPLKAVIYRCGDFHSVPLLGPWGGVNYT 60

Query: 61  PLLVLR*VWLKQFIPPTHNLKDSEFLYNLEDC*RKKR*AVCAWKSLRKIKDEG*SEGVTS 120
           PLLVLR VWLKQFIPPTHNL++S+F Y+ EDC  KKR AVCAWKS+RKIKD+G  EGVTS
Sbjct: 61  PLLVLRQVWLKQFIPPTHNLQESDFSYDPEDCQGKKRQAVCAWKSIRKIKDKGHYEGVTS 120

Query: 121 GYEAWQANRRNNVID 135
           GYEAWQANRR N+ID
Sbjct: 121 GYEAWQANRRKNIID 135

[Close]

BLAST of Chy1G007680 vs. NCBI nr
Match: KAA0046902.1 (girdin-like [Cucumis melo var. makuwa] >TYK03246.1 girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 242 bits (618), Expect = 4.50e-79
Identity = 108/135 (80.00%), Postives = 119/135 (88.15%), Query Frame = 0


Query: 1   MAVWDPTYPSKETWLSFFSTMSFENVIWKAQWMPLKAVIYRCGDFHNVPLLGPWGGVNNT 60
           MAVWDPTYP KE WLSFF+ ++ ENVIWKAQWMPLKAVIYRCGDFH+VPLLGPWGGVN T
Sbjct: 77  MAVWDPTYPRKEAWLSFFAKLTSENVIWKAQWMPLKAVIYRCGDFHSVPLLGPWGGVNYT 136

Query: 61  PLLVLR*VWLKQFIPPTHNLKDSEFLYNLEDC*RKKR*AVCAWKSLRKIKDEG*SEGVTS 120
           PLLVLR VWLKQFIPPTHNL++S+F Y+ EDC  KK  AVC WKS+RKIKD+G  EGVTS
Sbjct: 137 PLLVLRQVWLKQFIPPTHNLQESDFSYDPEDCQGKKCQAVCTWKSIRKIKDKGHYEGVTS 196

Query: 121 GYEAWQANRRNNVID 135
           GYEAWQANRR N+ID
Sbjct: 197 GYEAWQANRRKNIID 211

[Close]

BLAST of Chy1G007680 vs. NCBI nr
Match: KAA0044912.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 244 bits (622), Expect = 8.46e-78
Identity = 109/135 (80.74%), Postives = 120/135 (88.89%), Query Frame = 0


Query: 1   MAVWDPTYPSKETWLSFFSTMSFENVIWKAQWMPLKAVIYRCGDFHNVPLLGPWGGVNNT 60
           MAVWD TYP KE WLSFF+ ++ ENVIWKAQWMPLKAVIYRCGDFH+VPLLGPWGGVN T
Sbjct: 110 MAVWDQTYPRKEAWLSFFAKLTSENVIWKAQWMPLKAVIYRCGDFHSVPLLGPWGGVNYT 169

Query: 61  PLLVLR*VWLKQFIPPTHNLKDSEFLYNLEDC*RKKR*AVCAWKSLRKIKDEG*SEGVTS 120
           PLLVLR VWLKQFIPPTHNL++S+F Y+ EDC  KKR AVCAWKS+RKIKD+G  EGVTS
Sbjct: 170 PLLVLRQVWLKQFIPPTHNLQESDFSYDPEDCQGKKRQAVCAWKSIRKIKDKGHYEGVTS 229

Query: 121 GYEAWQANRRNNVID 135
           GYEAWQANRR N+ID
Sbjct: 230 GYEAWQANRRKNIID 244

The following BLAST results are available for this feature:

BLAST of Chy1G007680 vs.


Match Name	E-value	Identity	Description

BLAST of Chy1G007680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T5S7	9.9e-63	81.48	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00170 PE=...	[more]
A0A5D3CZ50	8.3e-62	80.74	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003770 PE...	[more]
A0A5A7TNJ1	8.3e-62	80.74	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002070 PE...	[more]
A0A5D3BYI1	2.4e-61	80.00	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00630 PE...	[more]
A0A5A7UL51	7.8e-60	77.78	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold288G001430 P...	[more]

BLAST of Chy1G007680 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031739496.1	1.57e-80	82.48	uncharacterized protein LOC116403043 [Cucumis sativus]	[more]
XP_031740432.1	3.65e-80	82.48	uncharacterized protein LOC116403430 [Cucumis sativus]	[more]
TYK16558.1	2.79e-79	80.74	girdin-like [Cucumis melo var. makuwa]	[more]
KAA0046902.1	4.50e-79	80.00	girdin-like [Cucumis melo var. makuwa] >TYK03246.1 girdin-like [Cucumis melo var...	[more]
KAA0044912.1	8.46e-78	80.74	girdin-like [Cucumis melo var. makuwa]	[more]

BLAST of Chy1G007680 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR48200	PROTEIN, PUTATIVE-RELATED	coord: 8..128

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy1G007680.1	Chy1G007680.1	mRNA