Chy1G006830 (gene) Cucumber (hystrix) v1

Overview
NameChy1G006830
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH01: 4950179 .. 4954383 (-)
RNA-Seq ExpressionChy1G006830
SyntenyChy1G006830
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTGTTTCCTTGTCAAGTGTGGGGCATTCAACCAAGTGCTAAGAATTCGAGAAGATAGTAATAATAGAAAGGAAAGAAAAATAGAAAGAGATGATGATATTGTCATTGGCGAGGCACCAAAAACGATGAAGATCAGCAAGAAGGGGCATCGACGAGTGAGAAGTAAGGAGAGAAAGATGAGGCCGTCGTCGTCATCGAGGTTGCAACGATCACAAATAGAGAGAGTTGAGTTGGGTGGATGGCTTGCAGCATGGTTGGAAGAGGCAGAAGGAGAAAGAGAGAAGGATGAAGTTAAGGAGTTGGAGAAGGAAAGCAAAAGTAAAAGAAAAATTGAAGAGGGGGAAGAAGGGAAGAAGCCCCTCTAGCCAACAAATTAAACTTCTACTTGAAGAGAAGAGGAATGATTTGTATTTGTAATTCTTTTTAACATTCTTTTTAAAAGGGATATACATTTTTGTAATATCACTTTTAACTTATAATTTATGAAATGATTGAATTCTTTGTTCTTTAGTTTGTGTTTTTATTAACTCACTAATTATAAATTCTTTTAAATTTGTTTATATTTATAATGATATATATGTTATATATTTAAGTTCATGAAATCTATTGAATAAAAGATTGAAAGGTCAAGAGAGCTTTAAATTTTTCTTTTTTGTAAAAAGGTTTGAAAATTCAAAGTTTTATTAATGTAAAATCCGAACACGTTGAGCAAAAACATGTTATACCAAAAAAGCAAAAAAAAGAAAAATTAAAAAGCACACTCCACAAATAAATATTTAGCTTAAAACATAAAAATAAAACTCTTGTTACCTAATTAAAATTTAAACCAAATCTCTACACTCTTAATACAAAATTATCAAAGAATAATAAAGTAAAAAAGAGGGGAAAAAAGAAGTATTTATCTGTTTTTGTCTTATTGAACAAAAACTACAATATTTTAATTCACCTTTCAAAAACTTTTCAGAACTATCCATGAAAATGGAGACTAGCTACTAGCTAAAACAATGTGAGGGTGACTTAGAACTATCCATGGGTAGAGATTAAATTCCATTTTAAGGTCACTTTCCACTAGTGGCGGATTTAGAAAATTTACTAACATGAAATTTATAGTTTAGTCAAAATATATATATACAGTACATGATAGTGTTGTCAATTTTCTTTTAGAATATTTATCCATTTAGATTTCAAATTAAATCTACAATAACATGACATTAGTTTTCAAATTCCATTACAAAAATTATGTGAAAATTGTCGGTATTTTTTTTTTGTTGCTACAAATGTAATTAATGTTATTGGAGTATCAGTGAATCGTCGTGATATATTTTTTAACATTTTTTAGTATGTTTATTATATAATGTCTGGTGCTCCTTATATAAAATTTTTAGATCTGCCACTGCATTTAATAAACAAATATATATATATATATATATATATATATATATATATATATAACCGAAATATTGAACACTGAACTTTTAGTTTACGGACACTTCAGGAAAAATTAAACATGAAGTATTGCAAAATTTACATAAATAGGAAGGATAAAAAAATATGAACGAAAAAAATTCGGACTTAATGGATATACTCGAAGGAGATGGAAAGAGGAAGAACAAATCAGAATACCAAACGAAAACTCTAATTGGAGAAAATTGTAACGTTGGACAGCGTCGAAAGTAGGTTTGTGAAATTTGATATTGGGTTGAGGATCAAATTGAATAGAGTGAATTTGTATAAATTATTAAATATAATATTATCATATTAGCCTTAACTTAATACCATATTAAAAGTAATTCTACAGTAAATGATATCCTAATAATAAATGCAAACATAATTATGGATTATTTATTATAATAAGTATGAAAGTTATAAAATAGATAATAAATTTGGTGTAATATAATTAAGGTAATATTTATTATATATTTTTTAAATTATTTATATTTAATATTGATGTGAATGTTAAAATGGTCTTAGAAAGCATAAAATCTTAATTAAAATAACAAATAAAATATTAGAACATTTGTAAAAAAATCATGTCTAAAATATATGGTTTTTCTAAATCTTTCTAAAATTAAACAGTCAAACTTAAAGTAATAGTAGAAATTAGATTTGTATATGATAAAATTTGAACTTAAAAAATTATTACAATTTATCCAATTATTTAAGTATATGAGTGCGTCTAATTTAAACACTTTTACATATATTTGAGGGCTTAACTTTAAATTTAAAAGTTTTAAAGTATAATTACAAATAAAATTTTCATAGTTATCCAAAGAGCATAACTAAAATATACTCTATAAGGTATGAAGCAAATTTGTATAATTAAATGATGCTTAATTAAGAGCTATAGAGACCAATGTGAAATATCGAGGAGTACAAAGTGAGCTTAATTAAGTTGTTTGTCTAAGTTTTTTTGTTTCTATCCTTTAGATGGGTAGGTCGAGATTAGTTAATTCAAAATTCTCTTAAATATTCTAAAATGCATTAATGATCTCAAAATTCAAAGGTTTTTTTTTTCTTTAACATAATTCTAAATATACAATCCCGTATTCTTTTAATCTTGTAAATCATTGGAATATTTTTAGATGTATAAACCAAAGAGAATGATGGCTTTGAGTTGTATCCAAGTCTAAAATTTACCTGAAATTACTTTTTATCCTATAATATCTCATTTATTATTATACATGTCGTAGCATGTCATGTATGTGTTATTTTTGATACTTAGTCATGTACCAAATTTGGTTTAAGTCTAATATATATGGTCTATATTTGTTTCTTTTAACGATGTATTTTTCAATACAATATATATGTCCTAGTGAGTTGATTTATGTTCATTCCATTTGGACACAAAAGATCCACATGTTCAAGTTTTATGAAACAATGAATGATTTATGTAGAGAGTTTGATCGCACACTAAATATAAAGTCATCCCACTAAGTCATTAGACTTCTTACTTAGGATTGACAGTTGGCGTAGTCATCATGCGAGTGAGAGAGGTGTAAAGAATAACATTGCTAGGGTTGGTTGGATGTGCTCTTAGAACATTGGTTGACATTGTCATGTATGATGCTACAATTGGGACACATGGATAAATGCAATAGTGGCGATACTAGATAGGTGCTTCAGGATGACAGGGACGTACACATTATAGCTTGGAAGAAAGTTTCAATGTGTTGTTTTGTAGAGCTAGGTTTGATTGATTAATAGTACTGTGGATGTGGTTATATATGATTATGCAATTACCTTTGACGGTGGAGTCAAACATTGTAACAGTTGGGTTGCTTGCTAGGAAGGAAGAAGTGTTAACCGAGTGAGATCGGTGGAGGACAATATTTTGTCTATGAAGGCTTAACTCGAGATTAATAAGTTTCATCACATTCGATATTCTATAATACAATGTGGATAGGTAAGCTCACTACGCAACAAATAATGGCTCTTAATCTTATATATTGTTGGTAGAATAATTTTCCTATTTGATTGTTTGGCGAATTTGATTGCATGAACTATGTAATATTGTTGAATCGTCTTTAAAATAGTAGTTGCAAATAAGTTTTTTCCTACTTAATACGTTAATTAAATTGAGATGGCAAAGCAAGCAATATATCAATTTTGAATACTAGATCTCTTTTATATAATTAAACAAATTGAATTAACTTATTATAATTTTAGGTTTGATTATAGCCATTCTTAGTTTTTTTTTTTAATGAATAAACTCTATGGTTCATCAATGGTGTGTACCATCACTATAAAATTGTGTCCCTGGCTAGTTTAAGATACATGATTAACTTGATTGTGTTTCTAATCATGCTAAGAGAAATTCTCTTTTCTCCATTAGGCCATACACCATTGTTTTCTTATTCTCCACTGATTAACTTCTCTACTTGAAAGAGAATATTTGAAAATTATGGCTATTAGACTAATGCAATCTACTCTTCAATTAATGCTTAGCCATGTGCCCTTACAATACTTGAAAGAACATTTGCAAATAGATCATAAGAACGTAAGTAAACTATTATTTTAAGTTATAAATTTAAATACTCAATTGTTAGTGTATCCAAAGAATGAGTGAGTTTTTTTCTTTACCCACTCCAACTCAATCACAAGTTAGTTGTCAATCGTAACTATGGATTTAAAAAGACTCGAATTTGAGGACATAATTGTAAACATGACCATATTTTTGGTTAGTTTCTGTAGTTTACCCTAA

mRNA sequence

ATGGATTGTTTCCTTGTCAAGTGTGGGGCATTCAACCAAGTGCTAAGAATTCGAGAAGATAGTAATAATAGAAAGGAAAGAAAAATAGAAAGAGATGATGATATTGTCATTGGCGAGGCACCAAAAACGATGAAGATCAGCAAGAAGGGGCATCGACGAGTGAGAAGTAAGGAGAGAAAGATGAGGCCGTCGTCGTCATCGAGGTTGCAACGATCACAAATAGAGAGAGTTGAGTTGGGTGGATGGCTTGCAGCATGTTTACCCTAA

Coding sequence (CDS)

ATGGATTGTTTCCTTGTCAAGTGTGGGGCATTCAACCAAGTGCTAAGAATTCGAGAAGATAGTAATAATAGAAAGGAAAGAAAAATAGAAAGAGATGATGATATTGTCATTGGCGAGGCACCAAAAACGATGAAGATCAGCAAGAAGGGGCATCGACGAGTGAGAAGTAAGGAGAGAAAGATGAGGCCGTCGTCGTCATCGAGGTTGCAACGATCACAAATAGAGAGAGTTGAGTTGGGTGGATGGCTTGCAGCATGTTTACCCTAA

Protein sequence

MDCFLVKCGAFNQVLRIREDSNNRKERKIERDDDIVIGEAPKTMKISKKGHRRVRSKERKMRPSSSSRLQRSQIERVELGGWLAACLP*
Homology
[Close]
BLAST of Chy1G006830 vs. ExPASy TrEMBL
Match: A0A0A0K1A5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G011880 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 3.4e-32
Identity = 77/87 (88.51%), Postives = 80/87 (91.95%), Query Frame = 0 

Query: 1  MDCFLVKCGAFNQVLRIREDSNNRKERKIERDDDIVIGEAPKTMKISKKGHRRVRSKERK 60
          M+CFL KCG  NQVLRIRED +NRKERKIERDDDIVIGEAPKTMKIS+KGHRRVRSKERK
Sbjct: 1  MNCFLAKCGTLNQVLRIREDGHNRKERKIERDDDIVIGEAPKTMKISRKGHRRVRSKERK 60

Query: 61 MRPSSSSRLQRSQIERVELGGWLAACL 88
          M P SSSRLQRSQIERVELGGWLAA L
Sbjct: 61 MMP-SSSRLQRSQIERVELGGWLAAWL 86

[Close]
BLAST of Chy1G006830 vs. NCBI nr
Match: KGN43248.1 (hypothetical protein Csa_020351 [Cucumis sativus])

HSP 1 Score: 146 bits (369), Expect = 1.80e-43
Identity = 77/87 (88.51%), Postives = 80/87 (91.95%), Query Frame = 0 

Query: 1  MDCFLVKCGAFNQVLRIREDSNNRKERKIERDDDIVIGEAPKTMKISKKGHRRVRSKERK 60
          M+CFL KCG  NQVLRIRED +NRKERKIERDDDIVIGEAPKTMKIS+KGHRRVRSKERK
Sbjct: 1  MNCFLAKCGTLNQVLRIREDGHNRKERKIERDDDIVIGEAPKTMKISRKGHRRVRSKERK 60

Query: 61 MRPSSSSRLQRSQIERVELGGWLAACL 87
          M PSSS RLQRSQIERVELGGWLAA L
Sbjct: 61 MMPSSS-RLQRSQIERVELGGWLAAWL 86

[Close]
BLAST of Chy1G006830 vs. NCBI nr
Match: KAG6572110.1 (hypothetical protein SDJN03_28838, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 66.2 bits (160), Expect = 9.70e-12
Identity = 45/89 (50.56%), Postives = 55/89 (61.80%), Query Frame = 0 

Query: 1  MDCFLVKCGAFNQVLRIREDSNNRKERKIERDDDIVIGEAPKTMKISK--KGHRRVRSKE 60
          MDCFLV CG   Q +RI+ D+N RK +K+ R D IV+ E P T K  K  +  RRV   E
Sbjct: 1  MDCFLV-CGVSRQAMRIQADNNKRKVKKVVR-DGIVVDETPTTTKGKKWQRRRRRVGDNE 60

Query: 61 RKMRPSSSSRLQRSQIERVELGGWLAACL 87
          R+     +SRLQR+   RVE GGWLAA L
Sbjct: 61 RE-----TSRLQRTDGGRVESGGWLAAWL 82

[Close]
BLAST of Chy1G006830 vs. NCBI nr
Match: KAG7011763.1 (Ubiquitin-conjugating enzyme E2 28 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 50.4 bits (119), Expect = 1.00e-04
Identity = 36/79 (45.57%), Postives = 47/79 (59.49%), Query Frame = 0 

Query: 11  FNQVLRIREDSNNRKERKIERDDDIVIGEAPKTMKISK--KGHRRVRSKERKMRPSSSSR 70
           +   +RI+ D+N RK +K+ R D IV+ E P T K  K  +  RRV   ER+     +SR
Sbjct: 222 YAMAMRIQADNNKRKVKKVVR-DGIVVDETPTTTKGKKWQRRRRRVGDNERE-----TSR 281

Query: 71  LQRSQIERVELGGWLAACL 87
           LQR+   RVE GGWLAA L
Sbjct: 282 LQRTDGGRVESGGWLAAWL 294

[Close]
BLAST of Chy1G006830 vs. NCBI nr
Match: KAG6589009.1 (hypothetical protein SDJN03_17574, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 48.1 bits (113), Expect = 1.05e-04
Identity = 33/87 (37.93%), Postives = 49/87 (56.32%), Query Frame = 0 

Query: 1  MDCFLVKCGAFNQVLRIREDSNNRKERKIERDDDIVIGEAPKTMKISKKGHRRVRSKERK 60
          M CF +KCG   QV RI+ D  ++K  + ++DD   + EAP  +   ++  +RV SKERK
Sbjct: 1  MACFFLKCGGSRQVPRIQNDDGSKKPMETQQDD--TVDEAPVEISNQRQHQQRVDSKERK 60

Query: 61 MRPSSSSRLQRSQIERVELGGWLAACL 87
               ++ L+R    + E  GWLAA L
Sbjct: 61 -----TTSLKRGG--KSESSGWLAAWL 78

The following BLAST results are available for this feature:
BLAST of Chy1G006830 vs.
Match NameE-valueIdentityDescription
BLAST of Chy1G006830 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K1A53.4e-3288.51Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G011880 PE=4 SV=1[more]
BLAST of Chy1G006830 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN43248.11.80e-4388.51hypothetical protein Csa_020351 [Cucumis sativus][more]
KAG6572110.19.70e-1250.56hypothetical protein SDJN03_28838, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7011763.11.00e-0445.57Ubiquitin-conjugating enzyme E2 28 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6589009.11.05e-0437.93hypothetical protein SDJN03_17574, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Chy1G006830 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..71

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy1G006830.1Chy1G006830.1mRNA