Chy1G005170 (gene) Cucumber (hystrix) v1

Overview
NameChy1G005170
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
Descriptiontransmembrane protein 256 homolog
LocationchrH01: 3725454 .. 3727571 (-)
RNA-Seq ExpressionChy1G005170
SyntenyChy1G005170
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGGCTGTGGACTCAAAGCAAGGAGAGCGACAGGTCGTTTTAACTTCAAACCAACGTCATCATATGGGGAAAAAAAAAAGAAAGAACCTGTCACAAAATCCCTCGTCGAAGCAAACCCAAAAGCAAAGAACAAGATGAACCCACTTTACTGGCACAAAGTTGCTGCGATTTCTGGTAAAGTGGTTTTCCCTTCGATTCTCTTGTTGTAGCTTCGCGATTATGATTTTAGATTTGTGATTTGATTTTGGCTTTAAACAGGCGTTGCAGCTCTTGGATTGGGCACGTACGGCGCTCATGGTTTCAAACCCAAAAATCCAGCTTATAAAGAGGTTGATTGGCTTCGTCTTTGATTCAATTTCTATGATTTGTTCTTCGATTTGATTTTGATTGTTGGTTTGATTTCAACGTTGTGGAGGTTTGGCAAACGGCGTCTCTCTATCATTTGGTTCACACAGCGGCTCTTCTTGCTGCCCCGTCGACCAAGAACCCTTACATTGTAAGTTTGTAGCACCATCGTTTTTGTATATAAATTTTTTCTGATCATTTTGGGCAAAGTTTATTGATAATCCAAACTTTTAACACGATTATTCAGCTAGTCTTACCTGAAAGTAAGCCCCAATTTTAAAGTTTTGGGTATGGTGGAATTCAAAGCACGAGATGATGTTAGGTTTCTTGGAATGTTCAAACCCACAAATAAAACTACTTGTATGTCTAACCCTAACTTTTTTTTTTTTTTGGTTTTTTTGTTGGAAAGGATTACTTTCTCACGATATTTTTACATCTACAATTGCAAAAACATAAATGAGGTCTTGAAAACTGTTTTATTTGTTATTTCGGTTGATTATCAAATGATTATCAAATGAGACGTTACAACAATTAAGACGTTACATTGTAGTTTAGGTGGGCAGATATGTCTTAGCATATGTTAGGTAAAATATTACACAAATAGAAATACAGAAAAATTAGTACAAACACAATTATACATAGGTCAATGTAAATGGTACTCATTCACATCACATGTTTACAAATATTTTATAAGATAAAGTTACTCATCCAAAATTCTCCTACTATTTACTTTGACTGGTCCTTTGATTCCTTTTCCCCCTTTTTCCTTTTGAGACAGTTTGGAGGCCTTTTGACGGCTGGAATCCTTGCATTTTCTGGCACGTAAGTTACCCGTTTTCTTTTCCATCTTCGATGTCTGTTTGGATCTCTTCTTTTTGGCTCTAAGTTTCTATGATTTATCTTTTACAACATTTCATATTCAAAATTTCCCCTAAACTGATAAGCCCAACATTTTATTGAAATGATAAAAATATCTCGGAGAATACTTGATCGACCGAGTGTAATTAGATGAAAAAGAATACACAGTAAGAGATCGATAATGAAGTGTTCAACACAAAAGCATTTGATAAAATAAACCACTTATTGGTTCCTTTTTTGCTAAACACTTAGTAAAGTGCTTGTCATTTCAAACATATCCAAAATTTGTATAATAGATTTGATTTCTGTTACTTTTATTGGGCAAAGATGGCTCTGGATTCAATTTGAGATCTCCACCAGTTTCCTTCCTTTTGGCAATTCTCCACATTGAACTCATCTGTTTGTTATGTTTAAGAGATGAATAAGAATGTGCGGTTGCAACTTGCATTGCAGGTGCTATACTGTGGCTCTTCTTGAAGATAGAAAGTATTCTTCTTTAGCTCCATTTGGTGGCTTTGCTTTCATTGGTGCATGGGCTAGCTTGCTCTTCTAAATTTACCCAGTTTCGATATGTTTAAAATCGCTACTTATCACGTCAATGCTTTTCGCTAAAGGTATTGGATTCTTGATTCAATCCATCTGTTGTGTTTAAGATTTTAAAAATGGGAAATGATCCAGGTGCAGTATAAATAGAGTTAGCTTATGCCATTTTTTAGTAAAAGGTTCAGAATAAATCTAGCTCATTGAACATACTTTCTTTTTGGGCAATCTGTAATTTATACTTTATAAAAGAGTAGTAATACTTTTGTTTTTTTAAGTATGCCAATTAAACTTTTAGAAGATGTGTAAGGGAAATTTGTTATTGTAATCAGTTTTATGTTTAAGGGTTAAAATCCAAATGTTTGGTATAAA

mRNA sequence

ATGTCGGCTGTGGACTCAAAGCAAGGAGAGCGACAGGTCGTTTTAACTTCAAACCAACGTCATCATATGGGGAAAAAAAAAAGAAAGAACCTGTCACAAAATCCCTCGTCGAAGCAAACCCAAAAGCAAAGAACAAGATGAACCCACTTTACTGGCACAAAGTTGCTGCGATTTCTGGCGTTGCAGCTCTTGGATTGGGCACGTACGGCGCTCATGGTTTCAAACCCAAAAATCCAGCTTATAAAGAGGTTTGGCAAACGGCGTCTCTCTATCATTTGGTTCACACAGCGGCTCTTCTTGCTGCCCCGTCGACCAAGAACCCTTACATTGTAAATGATACAGTTTGGAGGCCTTTTGACGGCTGGAATCCTTGCATTTTCTGGCACGTGCTATACTGTGGCTCTTCTTGAAGATAGAAAGTATTCTTCTTTAGCTCCATTTGGTGGCTTTGCTTTCATTGGTGCATGGGCTAGCTTGCTCTTCTAAATTTACCCAGTTTCGATATGTTTAAAATCGCTACTTATCACGTCAATGCTTTTCGCTAAAGGTATTGGATTCTTGATTCAATCCATCTGTTGTGTTTAAGATTTTAAAAATGGGAAATGATCCAGGTGCAGTATAAATAGAGTTAGCTTATGCCATTTTTTAGTAAAAGGTTCAGAATAAATCTAGCTCATTGAACATACTTTCTTTTTGGGCAATCTGTAATTTATACTTTATAAAAGAGTAGTAATACTTTTGTTTTTTTAAGTATGCCAATTAAACTTTTAGAAGATGTGTAAGGGAAATTTGTTATTGTAATCAGTTTTATGTTTAAGGGTTAAAATCCAAATGTTTGGTATAAA

Coding sequence (CDS)

ATGTCGGCTGTGGACTCAAAGCAAGGAGAGCGACAGGTCGTTTTAACTTCAAACCAACGTCATCATATGGGGAAAAAAAAAAGAAAGAACCTGTCACAAAATCCCTCGTCGAAGCAAACCCAAAAGCAAAGAACAAGATGAACCCACTTTACTGGCACAAAGTTGCTGCGATTTCTGGCGTTGCAGCTCTTGGATTGGGCACGTACGGCGCTCATGGTTTCAAACCCAAAAATCCAGCTTATAAAGAGGTTTGGCAAACGGCGTCTCTCTATCATTTGGTTCACACAGCGGCTCTTCTTGCTGCCCCGTCGACCAAGAACCCTTACATTGTAAATGATACAGTTTGGAGGCCTTTTGACGGCTGGAATCCTTGCATTTTCTGGCACGTGCTATACTGTGGCTCTTCTTGAAGATAGAAAGTATTCTTCTTTAGCTCCATTTGGTGGCTTTGCTTTCATTGGTGCATGGGCTAGCTTGCTCTTCTAAATTTACCCAGTTTCGATATGTTTAAAATCGCTACTTATCACGTCAATGCTTTTCGCTAAAGGTATTGGATTCTTGATTCAATCCATCTGTTGTGTTTAAGATTTTAAAAATGGGAAATGATCCAGGTGCAGTATAAATAGAGTTAGCTTATGCCATTTTTTAGTAAAAGGTTCAGAATAAATCTAGCTCATTGAACATACTTTCTTTTTGGGCAATCTGTAATTTATACTTTATAAAAGAGTAGTAATACTTTTGTTTTTTTAAGTATGCCAATTAAACTTTTAGAAGATGTGTAAGGGAAATTTGTTATTGTAATCAGTTTTATGTTTAAGGGTTAAAATCCAAATGTTTGGTATAAA

Protein sequence

MSAVDSKQGERQVVLTSNQRHHMGKKKRKNLSQNPSSKQTQKQRTR*THFTGTKLLRFLALQLLDWARTALMVSNPKIQLIKRFGKRRLSIIWFTQRLFLLPRRPRTLTL*MIQFGGLLTAGILAFSGTCYTVALLEDRKYSSLAPFGGFAFIGAWASLLF*IYPVSICLKSLLITSMLFAKGIGFLIQSICCV*DFKNGK*SRCSINRVSLCHFLVKGSE*I*LIEHTFFLGNL*FILYKRVVILLFF*VCQLNF*KMCKGNLLL*SVLCLRVKIQMFGIX
Homology
[Close]
BLAST of Chy1G005170 vs. ExPASy TrEMBL
Match: A0A1S3CG60 (transmembrane protein 256 homolog OS=Cucumis melo OX=3656 GN=LOC103500518 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.3e-26
Identity = 89/170 (52.35%), Postives = 100/170 (58.82%), Query Frame = 0 

Query: 1   MSAVDSKQGERQVVLTSNQRHHMGKKKRKNLSQ-----NPSSKQTQKQRTR*THFTGTKL 60
           MSAVDSKQGERQVVLTSNQRHHMGKKK++  ++     NP +K   K      H     +
Sbjct: 1   MSAVDSKQGERQVVLTSNQRHHMGKKKKEPFTKSLVEANPKAK--NKMNPLYWHKVAA-I 60

Query: 61  LRFLALQLLDWARTALMVSNPKIQLIKRFGKRRLSIIWFTQRLFLLPRRPRTLTL*MIQ- 120
               AL L  +        NP  +            +W T  L+ L      L     + 
Sbjct: 61  SGVAALGLGTYGAHGFKPKNPAYK-----------EVWQTASLYHLVHTAALLAAPSTKN 120

Query: 121 ---FGGLLTAGILAFSGTCYTVALLEDRKYSSLAPFGGFAFIGAWASLLF 162
              FGGLLTAGILAFSGTCYTVALLEDRKYSSLAPFGGFAFIGAWASLLF
Sbjct: 121 PNIFGGLLTAGILAFSGTCYTVALLEDRKYSSLAPFGGFAFIGAWASLLF 156

[Close]
BLAST of Chy1G005170 vs. ExPASy TrEMBL
Match: A0A0A0K1T6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G032280 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 5.8e-17
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0 

Query: 115 FGGLLTAGILAFSGTCYTVALLEDRKYSSLAPFGGFAFIGAWASLLF 162
           FGGLLTAGILAFSGTCYTVALLEDRKYSSLAPFGGFAFIGAWASLLF
Sbjct: 65  FGGLLTAGILAFSGTCYTVALLEDRKYSSLAPFGGFAFIGAWASLLF 111

[Close]
BLAST of Chy1G005170 vs. ExPASy TrEMBL
Match: A0A6J1I0K9 (transmembrane protein 256 homolog OS=Cucurbita maxima OX=3661 GN=LOC111468350 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.3e-16
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 0 

Query: 115 FGGLLTAGILAFSGTCYTVALLEDRKYSSLAPFGGFAFIGAWASLLF 162
           FGGLLTAGILAFSGTCYTVALLEDRKYS+LAPFGGFAFIGAWASLLF
Sbjct: 65  FGGLLTAGILAFSGTCYTVALLEDRKYSTLAPFGGFAFIGAWASLLF 111

[Close]
BLAST of Chy1G005170 vs. ExPASy TrEMBL
Match: A0A5A7UX46 (Transmembrane protein 256-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G001250 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.3e-16
Identity = 57/91 (62.64%), Postives = 64/91 (70.33%), Query Frame = 0 

Query: 77  KIQLIKRFGKRRLS--IIWFTQRLFLLPRRPRTLTL*MIQ----FGGLLTAGILAFSGTC 136
           K++ I R  ++R S   +W T  L+ L      L     +    FGGLLTAGILAFSGTC
Sbjct: 10  KVKPIDRSDEQRRSNLQVWQTASLYHLVHTAALLAAPSTKNPNIFGGLLTAGILAFSGTC 69

Query: 137 YTVALLEDRKYSSLAPFGGFAFIGAWASLLF 162
           YTVALLEDRKYSSLAPFGGFAFIGAWASLLF
Sbjct: 70  YTVALLEDRKYSSLAPFGGFAFIGAWASLLF 100

[Close]
BLAST of Chy1G005170 vs. ExPASy TrEMBL
Match: A0A6J1GM00 (transmembrane protein 256 homolog OS=Cucurbita moschata OX=3662 GN=LOC111455589 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.3e-16
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 0 

Query: 115 FGGLLTAGILAFSGTCYTVALLEDRKYSSLAPFGGFAFIGAWASLLF 162
           FGGLLTAGILAFSGTCYTVALLEDRKYS+LAPFGGFAFIGAWASLLF
Sbjct: 65  FGGLLTAGILAFSGTCYTVALLEDRKYSTLAPFGGFAFIGAWASLLF 111

[Close]
BLAST of Chy1G005170 vs. NCBI nr
Match: XP_008462078.1 (PREDICTED: transmembrane protein 256 homolog [Cucumis melo])

HSP 1 Score: 129 bits (325), Expect = 2.61e-33
Identity = 89/170 (52.35%), Postives = 100/170 (58.82%), Query Frame = 0 

Query: 1   MSAVDSKQGERQVVLTSNQRHHMGKKKRKNLSQ-----NPSSKQTQKQRTR*THFTGTKL 60
           MSAVDSKQGERQVVLTSNQRHHMGKKK++  ++     NP +K   K      H     +
Sbjct: 1   MSAVDSKQGERQVVLTSNQRHHMGKKKKEPFTKSLVEANPKAK--NKMNPLYWHKVAA-I 60

Query: 61  LRFLALQLLDWARTALMVSNPKIQLIKRFGKRRLSIIWFTQRLFLLPRRPRTLTL*MIQ- 120
               AL L  +        NP  +            +W T  L+ L      L     + 
Sbjct: 61  SGVAALGLGTYGAHGFKPKNPAYK-----------EVWQTASLYHLVHTAALLAAPSTKN 120

Query: 121 ---FGGLLTAGILAFSGTCYTVALLEDRKYSSLAPFGGFAFIGAWASLLF 161
              FGGLLTAGILAFSGTCYTVALLEDRKYSSLAPFGGFAFIGAWASLLF
Sbjct: 121 PNIFGGLLTAGILAFSGTCYTVALLEDRKYSSLAPFGGFAFIGAWASLLF 156

[Close]
BLAST of Chy1G005170 vs. NCBI nr
Match: KAA0059197.1 (transmembrane protein 256-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 97.4 bits (241), Expect = 1.46e-21
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0 

Query: 115 FGGLLTAGILAFSGTCYTVALLEDRKYSSLAPFGGFAFIGAWASLLF 161
           FGGLLTAGILAFSGTCYTVALLEDRKYSSLAPFGGFAFIGAWASLLF
Sbjct: 54  FGGLLTAGILAFSGTCYTVALLEDRKYSSLAPFGGFAFIGAWASLLF 100

[Close]
BLAST of Chy1G005170 vs. NCBI nr
Match: XP_004144544.1 (transmembrane protein 256 homolog [Cucumis sativus])

HSP 1 Score: 97.4 bits (241), Expect = 1.99e-21
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0 

Query: 115 FGGLLTAGILAFSGTCYTVALLEDRKYSSLAPFGGFAFIGAWASLLF 161
           FGGLLTAGILAFSGTCYTVALLEDRKYSSLAPFGGFAFIGAWASLLF
Sbjct: 65  FGGLLTAGILAFSGTCYTVALLEDRKYSSLAPFGGFAFIGAWASLLF 111

[Close]
BLAST of Chy1G005170 vs. NCBI nr
Match: XP_038887582.1 (transmembrane protein 256 homolog isoform X1 [Benincasa hispida])

HSP 1 Score: 97.4 bits (241), Expect = 2.10e-21
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0 

Query: 115 FGGLLTAGILAFSGTCYTVALLEDRKYSSLAPFGGFAFIGAWASLLF 161
           FGGLLTAGILAFSGTCYTVALLEDRKYSSLAPFGGFAFIGAWASLLF
Sbjct: 67  FGGLLTAGILAFSGTCYTVALLEDRKYSSLAPFGGFAFIGAWASLLF 113

[Close]
BLAST of Chy1G005170 vs. NCBI nr
Match: KAE8645711.1 (hypothetical protein Csa_020159 [Cucumis sativus])

HSP 1 Score: 97.8 bits (242), Expect = 2.48e-21
Identity = 56/91 (61.54%), Postives = 62/91 (68.13%), Query Frame = 0 

Query: 75  NPKIQLIKRFGKRRLSIIWFTQRLFLLPRRPRTLTL*MIQ----FGGLLTAGILAFSGTC 134
           N   Q+ +R   R +  +W T  L+ L      L     +    FGGLLTAGILAFSGTC
Sbjct: 42  NSAGQIFRRCSSR-IGHVWQTASLYHLVHTAALLAAPSTKNPNIFGGLLTAGILAFSGTC 101

Query: 135 YTVALLEDRKYSSLAPFGGFAFIGAWASLLF 161
           YTVALLEDRKYSSLAPFGGFAFIGAWASLLF
Sbjct: 102 YTVALLEDRKYSSLAPFGGFAFIGAWASLLF 131

[Close]
BLAST of Chy1G005170 vs. TAIR 10
Match: AT2G04900.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF423 (InterPro:IPR006696); Has 1824 Blast hits to 1824 proteins in 878 species: Archae - 0; Bacteria - 1498; Metazoa - 118; Fungi - 14; Plants - 58; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink). )

HSP 1 Score: 86.3 bits (212), Expect = 4.4e-17
Identity = 40/47 (85.11%), Postives = 44/47 (93.62%), Query Frame = 0 

Query: 115 FGGLLTAGILAFSGTCYTVALLEDRKYSSLAPFGGFAFIGAWASLLF 162
           FGGLLTAGI+AFSGTCY VAL EDRK+S+LAPFGGFAFI AWA+LLF
Sbjct: 82  FGGLLTAGIVAFSGTCYMVALREDRKFSTLAPFGGFAFIAAWATLLF 128

The following BLAST results are available for this feature:
BLAST of Chy1G005170 vs.
Match NameE-valueIdentityDescription
BLAST of Chy1G005170 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3CG602.3e-2652.35transmembrane protein 256 homolog OS=Cucumis melo OX=3656 GN=LOC103500518 PE=4 S... [more]
A0A0A0K1T65.8e-17100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G032280 PE=4 SV=1[more]
A0A6J1I0K91.3e-1697.87transmembrane protein 256 homolog OS=Cucurbita maxima OX=3661 GN=LOC111468350 PE... [more]
A0A5A7UX461.3e-1662.64Transmembrane protein 256-like protein OS=Cucumis melo var. makuwa OX=1194695 GN... [more]
A0A6J1GM001.3e-1697.87transmembrane protein 256 homolog OS=Cucurbita moschata OX=3662 GN=LOC111455589 ... [more]
BLAST of Chy1G005170 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008462078.12.61e-3352.35PREDICTED: transmembrane protein 256 homolog [Cucumis melo][more]
KAA0059197.11.46e-21100.00transmembrane protein 256-like protein [Cucumis melo var. makuwa][more]
XP_004144544.11.99e-21100.00transmembrane protein 256 homolog [Cucumis sativus][more]
XP_038887582.12.10e-21100.00transmembrane protein 256 homolog isoform X1 [Benincasa hispida][more]
KAE8645711.12.48e-2161.54hypothetical protein Csa_020159 [Cucumis sativus][more]
BLAST of Chy1G005170 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G04900.14.4e-1785.11unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006696Protein of unknown function DUF423PFAMPF04241DUF423coord: 108..147
e-value: 1.8E-6
score: 28.0
IPR006696Protein of unknown function DUF423PANTHERPTHR43461TRANSMEMBRANE PROTEIN 256coord: 65..159
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..19
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 33..47
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..47

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy1G005170.1Chy1G005170.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane