Chy1G005100 (gene) Cucumber (hystrix) v1

Overview


Name	Chy1G005100
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH01: 3689492 .. 3690902 (+)
RNA-Seq Expression	Chy1G005100
Synteny	Chy1G005100

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATTAAGAAGCGGAAGTTTGTGCGTTACCAAACAACGGCCTTAGAATATGCTCTTAGCTGTTATCAACTTTACCGGGAACTTCATCGGAGCCGGAGCACCAATCACTGCTTCTCAACTCTAACCATTTCAATTCCTTCTCTCCCTATCCTCTTCCTCCTCCTCCTCCTCTTCTTCTTCTTCCTCTTCCCGGTATCTTCTCTCCTTCCTTCTTCATCGGAGCTTCAATTTGACTTCAATTTCTTTGTCTCCTTACCCACTTCCCTCGTCTTCTGCACCTCTGATTCGCCTGCTCCAATTCCGAGCCCTGACTTGTAATTGAAGGCTGTGATTGATTTCTAGCGGAATTCTGTGCTTCCACGTCAAATTACTACACCTGTGTGATTTTCTAGGGCTTCAAACTCCGAGGCTTTGGCACTGAACCGGAGGTAGAGCTTTTTTTCCTTTCTCATGTCTAACTCAATATTATTGTTGTAAATTTTTAGGGGAGGGAGATAAGTATGTGGATATTTTTCTCTTGTTTCTGAAATTGAAGGCGGAATTTTGTGATTTGGATCTTAATTATTTTGATCCGTACTGGAGCTGGAGAATCTAGTTACTCAGCTCAAGCTGAGCCTACTTGGTCCGTATGTTTTGGATGAAATTTGTAGATAATTGTTTTTCTTCTCTTTTATAAGCTTAGTGGGAGTGAGAGTTTTACTTTGAACACCATCGTTTCTTTGTTCGCCTCGAAGATTTCATCGGATGGTGTGCAAGTGGTGGATTATTGTGCACTGAACTCGATTTCCATGTCTATTCTTTTTTCTATTAAAAAATTTGGTTATTAATTGAGAATTAAGATTATTTTCATGTATTGAATAATATATATCTTATCCCACTTCCCAAAACTTTTAAATGTTCAATATTTTGATTTTAGTACGGTATATTTTCGAAGTCAATCCTTCTTCTGTATGGTAAAATATAGTAGTCTGAATCAACTCTGACACTCTCGTTTCCATTTTTTTTTGGGGGGGTTGCTGGGCTAAACTGGAATTTCCACTTTTCGTGAGTACAAACACATTTTCATATTAGAAACAGCTTGGGGTTATATAATGCATGAATTTGGGGATGCTGAGTATGCATGAAATCTTCACGTCTTCTTTATGACCATGATTCTGAAGTCTGAAGTAAATTATCCACGCACACAATGACACGATCATTCTCGAGTAATAATAATAAATTGTTTGTTTGATATCTGGCCTCTTGAATTTTGGTTATATGGAGGTAGTCCAAAATGACTTTTAGCAATTTTCCATTTTGTTGCATTTCTTACCAGGATTCAGTATACAGCTAGACGTGACGTGGGATCCAGTTTCTGTGTCAATCAAATTGTGGAGAATAAGAGTTCTTTAGAGCTCTCTGGTTTATGA

mRNA sequence

ATGGCATTAAGAAGCGGAAGTTTCTGTTATCAACTTTACCGGGAACTTCATCGGAGCCGGAGCACCAATCACTGCTTCTCAACTCTAACCATTTCAATTCCTTCTCTCCCTATCCTCTTCCTCCTCCTCCTCCTCTTCTTCTTCTTCCTCTTCCCGGTATCTTCTCTCCTTCCTTCTTCATCGGAGCTTCAATTTGACTTCAATTTCTTTGTCTCCTTACCCACTTCCCTCGTCTTCTGCACCTCTGATTCGCCTGCTCCAATTCCGAGCCCTGACTTGGCTTCAAACTCCGAGGCTTTGGCACTGAACCGGAGGATTCAGTATACAGCTAGACGTGACGTGGGATCCAGTTTCTGTGTCAATCAAATTGTGGAGAATAAGAGTTCTTTAGAGCTCTCTGGTTTATGA

Coding sequence (CDS)

ATGGCATTAAGAAGCGGAAGTTTCTGTTATCAACTTTACCGGGAACTTCATCGGAGCCGGAGCACCAATCACTGCTTCTCAACTCTAACCATTTCAATTCCTTCTCTCCCTATCCTCTTCCTCCTCCTCCTCCTCTTCTTCTTCTTCCTCTTCCCGGTATCTTCTCTCCTTCCTTCTTCATCGGAGCTTCAATTTGACTTCAATTTCTTTGTCTCCTTACCCACTTCCCTCGTCTTCTGCACCTCTGATTCGCCTGCTCCAATTCCGAGCCCTGACTTGGCTTCAAACTCCGAGGCTTTGGCACTGAACCGGAGGATTCAGTATACAGCTAGACGTGACGTGGGATCCAGTTTCTGTGTCAATCAAATTGTGGAGAATAAGAGTTCTTTAGAGCTCTCTGGTTTATGA

Protein sequence

MALRSGSFCYQLYRELHRSRSTNHCFSTLTISIPSLPILFLLLLLFFFFLFPVSSLLPSSSELQFDFNFFVSLPTSLVFCTSDSPAPIPSPDLASNSEALALNRRIQYTARRDVGSSFCVNQIVENKSSLELSGL*

Homology

[Close]

BLAST of Chy1G005100 vs. ExPASy TrEMBL
Match: A0A0A0K1U7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G033360 PE=4 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 7.3e-58
Identity = 124/136 (91.18%), Postives = 126/136 (92.65%), Query Frame = 0


Query: 1   MALRSGSFCYQLYRELHRSRSTNHCFSTLTISIPSLPI-LFLLLLLFFFFLFPVSSLLPS 60
           MALRSGSFCYQLYRELHRSRSTNHCFSTLTISIPSL I  F   LL FFFLFPVSSL  S
Sbjct: 1   MALRSGSFCYQLYRELHRSRSTNHCFSTLTISIPSLSIFFFFFFLLLFFFLFPVSSLFSS 60

Query: 61  SSELQFDFNFFVSLPTSLVFCTSDSPAPIPSPDLASNSEALALNRRIQYTARRDVGSSFC 120
           SSELQFDFNFFVSLPTSLVFCTSDSPAPIP+PDLASNS+ LALNRRIQYTARRDVGSSFC
Sbjct: 61  SSELQFDFNFFVSLPTSLVFCTSDSPAPIPNPDLASNSKPLALNRRIQYTARRDVGSSFC 120

Query: 121 VNQIVENKSSLELSGL 136
           VNQIVENKSSLELSGL
Sbjct: 121 VNQIVENKSSLELSGL 136

[Close]

BLAST of Chy1G005100 vs. NCBI nr
Match: KGN43428.1 (hypothetical protein Csa_020467 [Cucumis sativus])

HSP 1 Score: 233 bits (595), Expect = 1.09e-76
Identity = 124/136 (91.18%), Postives = 126/136 (92.65%), Query Frame = 0


Query: 1   MALRSGSFCYQLYRELHRSRSTNHCFSTLTISIPSLPILFLLL-LLFFFFLFPVSSLLPS 60
           MALRSGSFCYQLYRELHRSRSTNHCFSTLTISIPSL I F    LL FFFLFPVSSL  S
Sbjct: 1   MALRSGSFCYQLYRELHRSRSTNHCFSTLTISIPSLSIFFFFFFLLLFFFLFPVSSLFSS 60

Query: 61  SSELQFDFNFFVSLPTSLVFCTSDSPAPIPSPDLASNSEALALNRRIQYTARRDVGSSFC 120
           SSELQFDFNFFVSLPTSLVFCTSDSPAPIP+PDLASNS+ LALNRRIQYTARRDVGSSFC
Sbjct: 61  SSELQFDFNFFVSLPTSLVFCTSDSPAPIPNPDLASNSKPLALNRRIQYTARRDVGSSFC 120

Query: 121 VNQIVENKSSLELSGL 135
           VNQIVENKSSLELSGL
Sbjct: 121 VNQIVENKSSLELSGL 136

The following BLAST results are available for this feature:

BLAST of Chy1G005100 vs.


Match Name	E-value	Identity	Description

BLAST of Chy1G005100 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K1U7	7.3e-58	91.18	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G033360 PE=4 SV=1	[more]

BLAST of Chy1G005100 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN43428.1	1.09e-76	91.18	hypothetical protein Csa_020467 [Cucumis sativus]	[more]

BLAST of Chy1G005100 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy1G005100.1	Chy1G005100.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane