Chy1G003800 (gene) Cucumber (hystrix) v1

Overview


Name	Chy1G003800
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Wound-responsive family protein
Location	chrH01: 2709733 .. 2709981 (-)
RNA-Seq Expression	Chy1G003800
Synteny	Chy1G003800

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTCATCAACAAGAGCTTTGGTTGTAGCAGCCACCGTCGGCGTCGTGGAAGCACTGAAGGATCAAGGAATTTGCCGGTGGAATCTTCTCTTAAGATCGGCCCATCACTACGCTAGAAACCATGTCCGGTCTATTTCTCAGGCTAAGAAGCTTTCCTCCACCGTGCCTTCCGCCAACCGCTTCCAACAGTCGGAGGAATCCCTGAGGACGGTCATGTATCTTAGTTGTTGGGGTCCTAATAACTGA

mRNA sequence

ATGAGTTCATCAACAAGAGCTTTGGTTGTAGCAGCCACCGTCGGCGTCGTGGAAGCACTGAAGGATCAAGGAATTTGCCGGTGGAATCTTCTCTTAAGATCGGCCCATCACTACGCTAGAAACCATGTCCGGTCTATTTCTCAGGCTAAGAAGCTTTCCTCCACCGTGCCTTCCGCCAACCGCTTCCAACAGTCGGAGGAATCCCTGAGGACGGTCATGTATCTTAGTTGTTGGGGTCCTAATAACTGA

Coding sequence (CDS)

ATGAGTTCATCAACAAGAGCTTTGGTTGTAGCAGCCACCGTCGGCGTCGTGGAAGCACTGAAGGATCAAGGAATTTGCCGGTGGAATCTTCTCTTAAGATCGGCCCATCACTACGCTAGAAACCATGTCCGGTCTATTTCTCAGGCTAAGAAGCTTTCCTCCACCGTGCCTTCCGCCAACCGCTTCCAACAGTCGGAGGAATCCCTGAGGACGGTCATGTATCTTAGTTGTTGGGGTCCTAATAACTGA

Protein sequence

MSSSTRALVVAATVGVVEALKDQGICRWNLLLRSAHHYARNHVRSISQAKKLSSTVPSANRFQQSEESLRTVMYLSCWGPNN*

Homology

[Close]

BLAST of Chy1G003800 vs. ExPASy TrEMBL
Match: A0A5D3C5F5 (Wound-responsive family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003750 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 3.6e-36
Identity = 80/82 (97.56%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 1  MSSSTRALVVAATVGVVEALKDQGICRWNLLLRSAHHYARNHVRSISQAKKLSSTVPSAN 60
          MSSSTRALVVAATVGVVEALKDQGICRWN LLRSAHHYARNHVRSISQAKKLSS VPSAN
Sbjct: 1  MSSSTRALVVAATVGVVEALKDQGICRWNHLLRSAHHYARNHVRSISQAKKLSSAVPSAN 60

Query: 61 RFQQSEESLRTVMYLSCWGPNN 83
          RFQQSEESLRTVMYLSCWGPNN
Sbjct: 61 RFQQSEESLRTVMYLSCWGPNN 82

[Close]

BLAST of Chy1G003800 vs. ExPASy TrEMBL
Match: A0A0A0K6Y8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G046640 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 3.6e-36
Identity = 80/82 (97.56%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 1  MSSSTRALVVAATVGVVEALKDQGICRWNLLLRSAHHYARNHVRSISQAKKLSSTVPSAN 60
          MSSSTRALVVAATVGVVEALKDQGICRWN LLRSAHHYARNHVRSISQAKKLSS VPSAN
Sbjct: 1  MSSSTRALVVAATVGVVEALKDQGICRWNHLLRSAHHYARNHVRSISQAKKLSSAVPSAN 60

Query: 61 RFQQSEESLRTVMYLSCWGPNN 83
          RFQQSEESLRTVMYLSCWGPNN
Sbjct: 61 RFQQSEESLRTVMYLSCWGPNN 82

[Close]

BLAST of Chy1G003800 vs. ExPASy TrEMBL
Match: A0A1S3C0A5 (uncharacterized protein LOC103495545 OS=Cucumis melo OX=3656 GN=LOC103495545 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 3.6e-36
Identity = 80/82 (97.56%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 1  MSSSTRALVVAATVGVVEALKDQGICRWNLLLRSAHHYARNHVRSISQAKKLSSTVPSAN 60
          MSSSTRALVVAATVGVVEALKDQGICRWN LLRSAHHYARNHVRSISQAKKLSS VPSAN
Sbjct: 1  MSSSTRALVVAATVGVVEALKDQGICRWNHLLRSAHHYARNHVRSISQAKKLSSAVPSAN 60

Query: 61 RFQQSEESLRTVMYLSCWGPNN 83
          RFQQSEESLRTVMYLSCWGPNN
Sbjct: 61 RFQQSEESLRTVMYLSCWGPNN 82

[Close]

BLAST of Chy1G003800 vs. ExPASy TrEMBL
Match: A0A5D3C9S0 (Wound-responsive family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003740 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 6.4e-33
Identity = 74/82 (90.24%), Postives = 76/82 (92.68%), Query Frame = 0


Query: 1  MSSSTRALVVAATVGVVEALKDQGICRWNLLLRSAHHYARNHVRSISQAKKLSSTVPSAN 60
          MSSSTRAL+VAATVGVVEALKDQGICRWN +LRSAHHYARNHV SISQAKK SS V SAN
Sbjct: 1  MSSSTRALIVAATVGVVEALKDQGICRWNHILRSAHHYARNHVGSISQAKKFSSAVSSAN 60

Query: 61 RFQQSEESLRTVMYLSCWGPNN 83
          R QQSEESLRTVMYLSCWGPNN
Sbjct: 61 RLQQSEESLRTVMYLSCWGPNN 82

[Close]

BLAST of Chy1G003800 vs. ExPASy TrEMBL
Match: A0A1S3C1Y6 (uncharacterized protein LOC103495544 OS=Cucumis melo OX=3656 GN=LOC103495544 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 6.4e-33
Identity = 74/82 (90.24%), Postives = 76/82 (92.68%), Query Frame = 0


Query: 1  MSSSTRALVVAATVGVVEALKDQGICRWNLLLRSAHHYARNHVRSISQAKKLSSTVPSAN 60
          MSSSTRAL+VAATVGVVEALKDQGICRWN +LRSAHHYARNHV SISQAKK SS V SAN
Sbjct: 1  MSSSTRALIVAATVGVVEALKDQGICRWNHILRSAHHYARNHVGSISQAKKFSSAVSSAN 60

Query: 61 RFQQSEESLRTVMYLSCWGPNN 83
          R QQSEESLRTVMYLSCWGPNN
Sbjct: 61 RLQQSEESLRTVMYLSCWGPNN 82

[Close]

BLAST of Chy1G003800 vs. NCBI nr
Match: XP_004136808.1 (uncharacterized protein LOC101223015 [Cucumis sativus] >XP_008455359.1 PREDICTED: uncharacterized protein LOC103495545 [Cucumis melo] >KAA0031605.1 Wound-responsive family protein [Cucumis melo var. makuwa] >KGN43576.1 hypothetical protein Csa_020502 [Cucumis sativus] >TYK07057.1 Wound-responsive family protein [Cucumis melo var. makuwa])

HSP 1 Score: 162 bits (409), Expect = 5.21e-50
Identity = 80/82 (97.56%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 1  MSSSTRALVVAATVGVVEALKDQGICRWNLLLRSAHHYARNHVRSISQAKKLSSTVPSAN 60
          MSSSTRALVVAATVGVVEALKDQGICRWN LLRSAHHYARNHVRSISQAKKLSS VPSAN
Sbjct: 1  MSSSTRALVVAATVGVVEALKDQGICRWNHLLRSAHHYARNHVRSISQAKKLSSAVPSAN 60

Query: 61 RFQQSEESLRTVMYLSCWGPNN 82
          RFQQSEESLRTVMYLSCWGPNN
Sbjct: 61 RFQQSEESLRTVMYLSCWGPNN 82

[Close]

BLAST of Chy1G003800 vs. NCBI nr
Match: XP_038888472.1 (uncharacterized protein LOC120078309 [Benincasa hispida])

HSP 1 Score: 153 bits (387), Expect = 1.19e-46
Identity = 75/82 (91.46%), Postives = 77/82 (93.90%), Query Frame = 0


Query: 1  MSSSTRALVVAATVGVVEALKDQGICRWNLLLRSAHHYARNHVRSISQAKKLSSTVPSAN 60
          MSSSTR LVVAATVGVVEALKDQGICRWN LLRS HHYARNHVRSISQAKKLSSTVPSAN
Sbjct: 1  MSSSTRTLVVAATVGVVEALKDQGICRWNHLLRSTHHYARNHVRSISQAKKLSSTVPSAN 60

Query: 61 RFQQSEESLRTVMYLSCWGPNN 82
            ++SEESLRTVMYLSCWGPNN
Sbjct: 61 HLRRSEESLRTVMYLSCWGPNN 82

[Close]

BLAST of Chy1G003800 vs. NCBI nr
Match: XP_008455358.1 (PREDICTED: uncharacterized protein LOC103495544 [Cucumis melo] >KAA0031604.1 Wound-responsive family protein [Cucumis melo var. makuwa] >TYK07056.1 Wound-responsive family protein [Cucumis melo var. makuwa])

HSP 1 Score: 151 bits (381), Expect = 9.78e-46
Identity = 74/82 (90.24%), Postives = 76/82 (92.68%), Query Frame = 0


Query: 1  MSSSTRALVVAATVGVVEALKDQGICRWNLLLRSAHHYARNHVRSISQAKKLSSTVPSAN 60
          MSSSTRAL+VAATVGVVEALKDQGICRWN +LRSAHHYARNHV SISQAKK SS V SAN
Sbjct: 1  MSSSTRALIVAATVGVVEALKDQGICRWNHILRSAHHYARNHVGSISQAKKFSSAVSSAN 60

Query: 61 RFQQSEESLRTVMYLSCWGPNN 82
          R QQSEESLRTVMYLSCWGPNN
Sbjct: 61 RLQQSEESLRTVMYLSCWGPNN 82

[Close]

BLAST of Chy1G003800 vs. NCBI nr
Match: XP_004136807.1 (uncharacterized protein LOC101222779 [Cucumis sativus] >KGN43577.1 hypothetical protein Csa_020183 [Cucumis sativus])

HSP 1 Score: 149 bits (375), Expect = 8.05e-45
Identity = 73/82 (89.02%), Postives = 75/82 (91.46%), Query Frame = 0


Query: 1  MSSSTRALVVAATVGVVEALKDQGICRWNLLLRSAHHYARNHVRSISQAKKLSSTVPSAN 60
          MSSSTRAL VAATVGVVEALKDQGICRWN +LRSAHHYARNHV S+SQAKK SS V SAN
Sbjct: 1  MSSSTRALFVAATVGVVEALKDQGICRWNHILRSAHHYARNHVGSLSQAKKFSSAVSSAN 60

Query: 61 RFQQSEESLRTVMYLSCWGPNN 82
          R QQSEESLRTVMYLSCWGPNN
Sbjct: 61 RLQQSEESLRTVMYLSCWGPNN 82

[Close]

BLAST of Chy1G003800 vs. NCBI nr
Match: XP_022952159.1 (uncharacterized protein LOC111454920 [Cucurbita moschata])

HSP 1 Score: 136 bits (342), Expect = 9.25e-40
Identity = 67/84 (79.76%), Postives = 73/84 (86.90%), Query Frame = 0


Query: 1  MSSSTRALVVAATVGVVEALKDQGICRWNLLLRSAHHYARNHVRSISQAKKLSSTVPSA- 60
          MSSSTRAL+VAA+VGVVEALKDQGICRWN  +RSAHHYA+NHV SISQAKK S+ VP A 
Sbjct: 1  MSSSTRALIVAASVGVVEALKDQGICRWNHFIRSAHHYAKNHVGSISQAKKFSAAVPPAP 60

Query: 61 -NRFQQSEESLRTVMYLSCWGPNN 82
            +  QSEESLRTVMYLSCWGPNN
Sbjct: 61 GKQLHQSEESLRTVMYLSCWGPNN 84

[Close]

BLAST of Chy1G003800 vs. TAIR 10
Match: AT4G10265.1 (Wound-responsive family protein )

HSP 1 Score: 107.1 bits (266), Expect = 7.1e-24
Identity = 52/83 (62.65%), Postives = 71/83 (85.54%), Query Frame = 0


Query: 1  MSSSTRALVVAATVGVVEALKDQ-GICRWNLLLRSAHHYARNHVRSISQAKKL-SSTVPS 60
          MSS+++  +VAA++G VEALKDQ G+CRWN ++RSA+ Y RN++RS+SQAKKL SS++  
Sbjct: 1  MSSASKTWMVAASIGAVEALKDQLGVCRWNYVIRSANQYLRNNLRSVSQAKKLSSSSIDY 60

Query: 61 ANRFQQSEESLRTVMYLSCWGPN 82
           N+ +Q+EESLRTVMYLSCWGP+
Sbjct: 61 TNKTKQAEESLRTVMYLSCWGPS 83

[Close]

BLAST of Chy1G003800 vs. TAIR 10
Match: AT4G10270.1 (Wound-responsive family protein )

HSP 1 Score: 97.8 bits (242), Expect = 4.3e-21
Identity = 50/90 (55.56%), Postives = 67/90 (74.44%), Query Frame = 0


Query: 1  MSSSTRALVVAATVGVVEALKDQ-GICRWNLLLRSAHHYARNHVRSISQAKKLSSTVPSA 60
          MSS+++A  VA ++G VEALKDQ G+CRWN +LRS + + RN+VRS+SQ K+ SS+  SA
Sbjct: 1  MSSTSKAWTVAVSIGAVEALKDQLGLCRWNYILRSVNQHLRNNVRSVSQGKRFSSSSVSA 60

Query: 61 --------NRFQQSEESLRTVMYLSCWGPN 82
                   + +++EESLRTVMYLSCWGPN
Sbjct: 61 AVTSSGESEKAKKAEESLRTVMYLSCWGPN 90

[Close]

BLAST of Chy1G003800 vs. TAIR 10
Match: AT4G33560.1 (Wound-responsive family protein )

HSP 1 Score: 48.1 bits (113), Expect = 3.9e-06
Identity = 29/80 (36.25%), Postives = 37/80 (46.25%), Query Frame = 0


Query: 10 VAATVGVVEALKDQGICRWNLLLRSAHHYARNHVRSISQAKKLSSTVPSANRFQ------ 69
          VA  +  VE LKDQG+ RWN L R  H  A   VR+I+   + S    S++         
Sbjct: 11 VATAIAAVEVLKDQGVARWNYLFRLLHKEAMARVRTITVPSRPSPPTSSSSATSIRSKPL 70

Query: 70 ---QSEESLRTVMYLSCWGP 81
               E S    M LSC+GP
Sbjct: 71 STTPFETSFEKAMGLSCFGP 90

The following BLAST results are available for this feature:

BLAST of Chy1G003800 vs.


Match Name	E-value	Identity	Description

BLAST of Chy1G003800 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C5F5	3.6e-36	97.56	Wound-responsive family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A0A0K6Y8	3.6e-36	97.56	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G046640 PE=4 SV=1	[more]
A0A1S3C0A5	3.6e-36	97.56	uncharacterized protein LOC103495545 OS=Cucumis melo OX=3656 GN=LOC103495545 PE=...	[more]
A0A5D3C9S0	6.4e-33	90.24	Wound-responsive family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3C1Y6	6.4e-33	90.24	uncharacterized protein LOC103495544 OS=Cucumis melo OX=3656 GN=LOC103495544 PE=...	[more]

BLAST of Chy1G003800 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004136808.1	5.21e-50	97.56	uncharacterized protein LOC101223015 [Cucumis sativus] >XP_008455359.1 PREDICTED...	[more]
XP_038888472.1	1.19e-46	91.46	uncharacterized protein LOC120078309 [Benincasa hispida]	[more]
XP_008455358.1	9.78e-46	90.24	PREDICTED: uncharacterized protein LOC103495544 [Cucumis melo] >KAA0031604.1 Wou...	[more]
XP_004136807.1	8.05e-45	89.02	uncharacterized protein LOC101222779 [Cucumis sativus] >KGN43577.1 hypothetical ...	[more]
XP_022952159.1	9.25e-40	79.76	uncharacterized protein LOC111454920 [Cucurbita moschata]	[more]

BLAST of Chy1G003800 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G10265.1	7.1e-24	62.65	Wound-responsive family protein	[more]
AT4G10270.1	4.3e-21	55.56	Wound-responsive family protein	[more]
AT4G33560.1	3.9e-06	36.25	Wound-responsive family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022251	Protein of unknown function wound-induced	PFAM	PF12609	DUF3774	coord: 10..80 e-value: 2.9E-31 score: 108.3
IPR022251	Protein of unknown function wound-induced	PANTHER	PTHR33090	DUF3774 DOMAIN PROTEIN-RELATED	coord: 1..81
None	No IPR available	PANTHER	PTHR33090:SF56	WOUND-RESPONSIVE FAMILY PROTEIN	coord: 1..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy1G003800.1	Chy1G003800.1	mRNA