Chy1G003490 (gene) Cucumber (hystrix) v1

Overview


Name	Chy1G003490
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Phospho-N-acetylmuramoyl-pentapeptide-transferase, putative
Location	chrH01: 2530140 .. 2531602 (+)
RNA-Seq Expression	Chy1G003490
Synteny	Chy1G003490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTTCCTCCCAATTCCCCTTTTCCAACCAAAACACACACAAACGAAGAAATTAAAAAGGGCCACCCACCACATTTCCATGAAGAAAACAGGCCTCTTCGCTGCCTCCGTCGCCGCTGCCTCCGCCACCGCCCTCTCTGCTCCCCCGTCCTCCCCCGGCCTCCTCAAAACCAACTTCTCCCATCAGGTAATATTCTAACAAATTCACTCAAAACTCTCATTAACAGCTACAAAAGTTAAAAATCAACGATTCTTGGGTATTTCAGGAAAAAGTCACCAGAGATGAGGAAAGTACTACACCGGCGAGAAGATCGCCGCCGTCTACGGCAGCAGATCAATTTGCTCCCAGATTCGATGGGTTGAGATTCATTGAAACTCTTGTCACTGCGCATAGATGATAAGCTTTGGCAATAAAAATGGCCTTCCATCTTTTTTCTTTTCTGTCTTATTGTTAAAAATTAAAAAAACAATTGCTTTGAGAAAAGAAACCCCAATTCTGTATTGCAAGTGGTTGGTTTGTTTTTTTTTTTTTTTTTTTTTAGAGGTTGATCTTGTAATTCAATCATATAATGTAATGTAAGAATATAACGTGACATGTATTTTTACTATGTCAGTCATTCTGCAGTGCTCTGTTTTGGTAATGACAAATTGACAATACAACTTTGGCCTTTTCAACTTGATCGTTTTAAAGTGGATATTATTTCCATCTTTCATTCTCATCCCATCAAAAGGAAAACCACTACAAAAAGAAAAAAAGTTCAAATGTTAGTCCTGTCCCTTTATTTTGTCATTCAAATTCCCATAAATGTTTAGGAATCAACTCTATTTTAAAGTCTTGATATAATTAAATTTTTTTATTTAACATAGTTTTGTATTGATTTTTATTTGTTAGATTTAAGCGAGAGAGGGATGGAGTTAGATATTACGACAATAACACGTAATATCTATGGTGAAAGATATTTTATTATGGAAGGGATATAAGTTCTGTCTCATTCGACGGTTTCATAATTTAATAATAGTCAAGTTTATTGAACAATTGACAAGTGATTTTTCTAATTGGTTTTTATCTTTTAGTTGAGACGCACATATTGATGTCTTTTTAATTACTTTTTTAAAATTAAAAATTTCTAACTAAGTCAAATCAAACAAATAATTATAGATCAATATAGAAAGAAATGGTCATAAAGGAGTTGTTATTCAACTTTGGAATGAGCCTCTTTTATTTTAACATCCTCGGATCCACAATCAACAAAGTTGAGTGCCTTTTCTTTAATGGGGTCACAACCACAATGTGGCTGAGGTTCCATAATGGAAATATTATTAGTTGTGTCTTTCACCATGGGGGATGTTGGTTCATAGTTATCTTTAATCTTGAAAATAGCAAAAATGAAAAATAATAGTATGCCAATTGGTTCATTTTGGAACCACTAAATTTTGGACAAATTAGATAAGTATTTGTATGAG

mRNA sequence

AATTTCCTCCCAATTCCCCTTTTCCAACCAAAACACACACAAACGAAGAAATTAAAAAGGGCCACCCACCACATTTCCATGAAGAAAACAGGCCTCTTCGCTGCCTCCGTCGCCGCTGCCTCCGCCACCGCCCTCTCTGCTCCCCCGTCCTCCCCCGGCCTCCTCAAAACCAACTTCTCCCATCAGGAAAAAGTCACCAGAGATGAGGAAAGTACTACACCGGCGAGAAGATCGCCGCCGTCTACGGCAGCAGATCAATTTGCTCCCAGATTCGATGGGTTGAGATTCATTGAAACTCTTGTCACTGCGCATAGATGATAAGCTTTGGCAATAAAAATGGCCTTCCATCTTTTTTCTTTTCTGTCTTATTGTTAAAAATTAAAAAAACAATTGCTTTGAGAAAAGAAACCCCAATTCTGTATTGCAAGTGGTTGGTTTGTTTTTTTTTTTTTTTTTTTTTAGAGGTTGATCTTGTAATTCAATCATATAATGTAATGTAAGAATATAACGTGACATGTATTTTTACTATGTCATATTTGTATGAG

Coding sequence (CDS)

AATTTCCTCCCAATTCCCCTTTTCCAACCAAAACACACACAAACGAAGAAATTAAAAAGGGCCACCCACCACATTTCCATGAAGAAAACAGGCCTCTTCGCTGCCTCCGTCGCCGCTGCCTCCGCCACCGCCCTCTCTGCTCCCCCGTCCTCCCCCGGCCTCCTCAAAACCAACTTCTCCCATCAGGAAAAAGTCACCAGAGATGAGGAAAGTACTACACCGGCGAGAAGATCGCCGCCGTCTACGGCAGCAGATCAATTTGCTCCCAGATTCGATGGGTTGAGATTCATTGAAACTCTTGTCACTGCGCATAGATGATAAGCTTTGGCAATAAAAATGGCCTTCCATCTTTTTTCTTTTCTGTCTTATTGTTAAAAATTAAAAAAACAATTGCTTTGAGAAAAGAAACCCCAATTCTGTATTGCAAGTGGTTGGTTTGTTTTTTTTTTTTTTTTTTTTTAGAGGTTGATCTTGTAATTCAATCATATAATGTAATGTAAGAATATAACGTGACATGTATTTTTACTATGTCATATTTGTATGAG

Protein sequence

NFLPIPLFQPKHTQTKKLKRATHHISMKKTGLFAASVAAASATALSAPPSSPGLLKTNFSHQEKVTRDEESTTPARRSPPSTAADQFAPRFDGLRFIETLVTAHR**ALAIKMAFHLFSFLSYC*KLKKQLL*EKKPQFCIASGWFVFFFFFF*RLIL*FNHIM*CKNIT*HVFLLCHICMX

Homology

[Close]

BLAST of Chy1G003490 vs. ExPASy TrEMBL
Match: A0A0A0K2C1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G047970 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 5.4e-32
Identity = 77/79 (97.47%), Postives = 78/79 (98.73%), Query Frame = 0


Query: 27  MKKTGLFAASVAAASATALSAPPSSPGLLKTNFSHQEKVTRDEESTTPARRSPPSTAADQ 86
           MKKTGLFAASVAAASATALSAPP+SPGLLKTNFS QEKVTRDEESTTPARRSPPSTAADQ
Sbjct: 1   MKKTGLFAASVAAASATALSAPPASPGLLKTNFSRQEKVTRDEESTTPARRSPPSTAADQ 60

Query: 87  FAPRFDGLRFIETLVTAHR 106
           FAPRFDGLRFIETLVTAHR
Sbjct: 61  FAPRFDGLRFIETLVTAHR 79

[Close]

BLAST of Chy1G003490 vs. ExPASy TrEMBL
Match: A0A5D3C7A0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003450 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 1.6e-28
Identity = 73/80 (91.25%), Postives = 74/80 (92.50%), Query Frame = 0


Query: 27  MKKTGLFAASVAAASATALSAPPSSPGLLKTNFSHQEKV-TRDEESTTPARRSPPSTAAD 86
           MKKTGLFAASVAAASATALSAPPSSP  LKTNFSHQEKV  RDEE TTP RRSPPSTA+D
Sbjct: 1   MKKTGLFAASVAAASATALSAPPSSPSTLKTNFSHQEKVIARDEEITTPTRRSPPSTASD 60

Query: 87  QFAPRFDGLRFIETLVTAHR 106
           QFAPRFDGLRFIETLVTAHR
Sbjct: 61  QFAPRFDGLRFIETLVTAHR 80

[Close]

BLAST of Chy1G003490 vs. ExPASy TrEMBL
Match: A0A6J1GMF4 (uncharacterized protein LOC111455296 OS=Cucurbita moschata OX=3662 GN=LOC111455296 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 6.4e-25
Identity = 66/79 (83.54%), Postives = 70/79 (88.61%), Query Frame = 0


Query: 27  MKKTGLFAASVAAASATALSAPPSSPGLLKTNFSHQEKVTRDEESTTPARRSPPSTAADQ 86
           MKKTGLFAASVAAASATALSAP SS G+LKT FSHQEKV   +E T+P+R SPPSTA DQ
Sbjct: 3   MKKTGLFAASVAAASATALSAPSSSAGVLKTTFSHQEKVISRDEETSPSRISPPSTAPDQ 62

Query: 87  FAPRFDGLRFIETLVTAHR 106
           FAPRFDGLRFIETLVTAHR
Sbjct: 63  FAPRFDGLRFIETLVTAHR 81

[Close]

BLAST of Chy1G003490 vs. ExPASy TrEMBL
Match: A0A6J1I0M0 (uncharacterized protein LOC111468357 OS=Cucurbita maxima OX=3661 GN=LOC111468357 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 8.3e-25
Identity = 66/79 (83.54%), Postives = 71/79 (89.87%), Query Frame = 0


Query: 27  MKKTGLFAASVAAASATALSAPPSSPGLLKTNFSHQEKVTRDEESTTPARRSPPSTAADQ 86
           MKKTGLFAASVAAASATALSAP SS G+LKT FSHQEKV   +E ++P+R SPPSTAADQ
Sbjct: 3   MKKTGLFAASVAAASATALSAPSSSAGVLKTTFSHQEKVIIRDEESSPSRISPPSTAADQ 62

Query: 87  FAPRFDGLRFIETLVTAHR 106
           FAPRFDGLRFIETLVTAHR
Sbjct: 63  FAPRFDGLRFIETLVTAHR 81

[Close]

BLAST of Chy1G003490 vs. ExPASy TrEMBL
Match: E0CTD2 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_12s0028g03790 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 4.0e-11
Identity = 49/81 (60.49%), Postives = 58/81 (71.60%), Query Frame = 0


Query: 27  MKKTGLFAASVAAASATALSAPPSSPGLL--KTNFSHQEKVTRDEESTTPARRSPPSTAA 86
           MKK+G FAASVAAASATA+SAP SS  L   K   S  E V   +   + ++R   S++A
Sbjct: 1   MKKSGFFAASVAAASATAISAPSSSGFLCNSKIQLSRDEAVAGKDIENSESQR---SSSA 60

Query: 87  DQFAPRFDGLRFIETLVTAHR 106
           D+FAPRFDGLRFIETLVTAHR
Sbjct: 61  DRFAPRFDGLRFIETLVTAHR 78

[Close]

BLAST of Chy1G003490 vs. NCBI nr
Match: KGN43613.1 (hypothetical protein Csa_020428 [Cucumis sativus])

HSP 1 Score: 149 bits (376), Expect = 2.33e-43
Identity = 77/79 (97.47%), Postives = 78/79 (98.73%), Query Frame = 0


Query: 27  MKKTGLFAASVAAASATALSAPPSSPGLLKTNFSHQEKVTRDEESTTPARRSPPSTAADQ 86
           MKKTGLFAASVAAASATALSAPP+SPGLLKTNFS QEKVTRDEESTTPARRSPPSTAADQ
Sbjct: 1   MKKTGLFAASVAAASATALSAPPASPGLLKTNFSRQEKVTRDEESTTPARRSPPSTAADQ 60

Query: 87  FAPRFDGLRFIETLVTAHR 105
           FAPRFDGLRFIETLVTAHR
Sbjct: 61  FAPRFDGLRFIETLVTAHR 79

[Close]

BLAST of Chy1G003490 vs. NCBI nr
Match: XP_038888462.1 (uncharacterized protein LOC120078298 [Benincasa hispida])

HSP 1 Score: 139 bits (351), Expect = 1.46e-39
Identity = 71/79 (89.87%), Postives = 76/79 (96.20%), Query Frame = 0


Query: 27  MKKTGLFAASVAAASATALSAPPSSPGLLKTNFSHQEKVTRDEESTTPARRSPPSTAADQ 86
           MKKTGLFAASVAAASATALSAPPSS G+LKT FSHQE+VTRD+E TTP+RRSPPSTAA+Q
Sbjct: 1   MKKTGLFAASVAAASATALSAPPSSAGILKTTFSHQEQVTRDQEITTPSRRSPPSTAAEQ 60

Query: 87  FAPRFDGLRFIETLVTAHR 105
           FAPRFDGLRFIETLVTAHR
Sbjct: 61  FAPRFDGLRFIETLVTAHR 79

[Close]

BLAST of Chy1G003490 vs. NCBI nr
Match: KAA0031576.1 (hypothetical protein E6C27_scaffold139G003430 [Cucumis melo var. makuwa] >TYK07028.1 hypothetical protein E5676_scaffold13G003450 [Cucumis melo var. makuwa])

HSP 1 Score: 137 bits (346), Expect = 8.61e-39
Identity = 73/80 (91.25%), Postives = 74/80 (92.50%), Query Frame = 0


Query: 27  MKKTGLFAASVAAASATALSAPPSSPGLLKTNFSHQEKV-TRDEESTTPARRSPPSTAAD 86
           MKKTGLFAASVAAASATALSAPPSSP  LKTNFSHQEKV  RDEE TTP RRSPPSTA+D
Sbjct: 1   MKKTGLFAASVAAASATALSAPPSSPSTLKTNFSHQEKVIARDEEITTPTRRSPPSTASD 60

Query: 87  QFAPRFDGLRFIETLVTAHR 105
           QFAPRFDGLRFIETLVTAHR
Sbjct: 61  QFAPRFDGLRFIETLVTAHR 80

[Close]

BLAST of Chy1G003490 vs. NCBI nr
Match: XP_023554654.1 (uncharacterized protein LOC111811842 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 127 bits (320), Expect = 7.77e-35
Identity = 67/79 (84.81%), Postives = 71/79 (89.87%), Query Frame = 0


Query: 27  MKKTGLFAASVAAASATALSAPPSSPGLLKTNFSHQEKVTRDEESTTPARRSPPSTAADQ 86
           MKKTGLFAASVAAASATALSAP SS G+LKT FSHQEKV   +E T+P+R SPPSTAADQ
Sbjct: 3   MKKTGLFAASVAAASATALSAPSSSTGVLKTTFSHQEKVISRDEETSPSRISPPSTAADQ 62

Query: 87  FAPRFDGLRFIETLVTAHR 105
           FAPRFDGLRFIETLVTAHR
Sbjct: 63  FAPRFDGLRFIETLVTAHR 81

[Close]

BLAST of Chy1G003490 vs. NCBI nr
Match: XP_022952670.1 (uncharacterized protein LOC111455296 [Cucurbita moschata] >KAG6572361.1 hypothetical protein SDJN03_29089, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011972.1 hypothetical protein SDJN02_26880 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 125 bits (315), Expect = 4.45e-34
Identity = 66/79 (83.54%), Postives = 70/79 (88.61%), Query Frame = 0


Query: 27  MKKTGLFAASVAAASATALSAPPSSPGLLKTNFSHQEKVTRDEESTTPARRSPPSTAADQ 86
           MKKTGLFAASVAAASATALSAP SS G+LKT FSHQEKV   +E T+P+R SPPSTA DQ
Sbjct: 3   MKKTGLFAASVAAASATALSAPSSSAGVLKTTFSHQEKVISRDEETSPSRISPPSTAPDQ 62

Query: 87  FAPRFDGLRFIETLVTAHR 105
           FAPRFDGLRFIETLVTAHR
Sbjct: 63  FAPRFDGLRFIETLVTAHR 81

[Close]

BLAST of Chy1G003490 vs. TAIR 10
Match: AT4G28290.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 45 Blast hits to 45 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 60.8 bits (146), Expect = 1.3e-09
Identity = 41/83 (49.40%), Postives = 55/83 (66.27%), Query Frame = 0


Query: 27  MKKTGLFAASVA-AASATALSAPPSSPGLLKTNFSHQEKVTRDEESTTPARRSPPST--- 86
           MKKTG+ AAS++ AASATA+SA  ++  +   +FS  E     +E+    R+   S+   
Sbjct: 1   MKKTGIIAASISVAASATAISAGSTNTSV---SFSSPESNLSRQEAKEKQRKKKGSSEDG 60

Query: 87  AADQFAPRFDGLRFIETLVTAHR 106
             ++FAPRFDGLRFIETLVTAHR
Sbjct: 61  GDEKFAPRFDGLRFIETLVTAHR 80

[Close]

BLAST of Chy1G003490 vs. TAIR 10
Match: AT5G42110.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; Has 36 Blast hits to 36 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.1 bits (105), Expect = 7.2e-05
Identity = 34/83 (40.96%), Postives = 40/83 (48.19%), Query Frame = 0


Query: 27  MKKTGLFAASVAAASATALSA----PPSSPGLLKTNFSHQEKVTRDEESTTPARRSPPST 86
           MK +    ASV A S  ALS+    PP SP + +                     S  + 
Sbjct: 1   MKVSSGVVASVIAVSTAALSSSSILPPVSPKVWE---------------------SRKTN 60

Query: 87  AADQFAPRFDGLRFIETLVTAHR 106
            +D F PRFDGLRFIETLVTAHR
Sbjct: 61  GSDNFEPRFDGLRFIETLVTAHR 62

The following BLAST results are available for this feature:

BLAST of Chy1G003490 vs.


Match Name	E-value	Identity	Description

BLAST of Chy1G003490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K2C1	5.4e-32	97.47	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G047970 PE=4 SV=1	[more]
A0A5D3C7A0	1.6e-28	91.25	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1GMF4	6.4e-25	83.54	uncharacterized protein LOC111455296 OS=Cucurbita moschata OX=3662 GN=LOC1114552...	[more]
A0A6J1I0M0	8.3e-25	83.54	uncharacterized protein LOC111468357 OS=Cucurbita maxima OX=3661 GN=LOC111468357...	[more]
E0CTD2	4.0e-11	60.49	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_12s0028g03790 PE=4 SV=...	[more]

BLAST of Chy1G003490 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN43613.1	2.33e-43	97.47	hypothetical protein Csa_020428 [Cucumis sativus]	[more]
XP_038888462.1	1.46e-39	89.87	uncharacterized protein LOC120078298 [Benincasa hispida]	[more]
KAA0031576.1	8.61e-39	91.25	hypothetical protein E6C27_scaffold139G003430 [Cucumis melo var. makuwa] >TYK070...	[more]
XP_023554654.1	7.77e-35	84.81	uncharacterized protein LOC111811842 [Cucurbita pepo subsp. pepo]	[more]
XP_022952670.1	4.45e-34	83.54	uncharacterized protein LOC111455296 [Cucurbita moschata] >KAG6572361.1 hypothet...	[more]

BLAST of Chy1G003490 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G28290.1	1.3e-09	49.40	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G42110.1	7.2e-05	40.96	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..83
None	No IPR available	PANTHER	PTHR34683	EXPRESSED PROTEIN-RELATED	coord: 27..105
None	No IPR available	PANTHER	PTHR34683:SF2	EXPRESSED PROTEIN	coord: 27..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy1G003490.1	Chy1G003490.1	mRNA