Chy1G002350 (gene) Cucumber (hystrix) v1

Overview


Name	Chy1G002350
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	DNA repair protein XRCC4
Location	chrH01: 1626723 .. 1629854 (+)
RNA-Seq Expression	Chy1G002350
Synteny	Chy1G002350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGCAATCAGGCACACATGCCTGAAGCTTGAAGTTCCAACCAACGCCCAGCCCAACGAAAGAAGCTCCATCTTCGTCAAAGGCACTTGGAATCATCTCCGCTTCGATCTCTCCATCACCGACGCCCTCCACGCTTGGACGTGCCATGGTTCCATTACTGAAACTTCCACTCAATTTAACTTTGTTTAGTTTCTCTTCTATTCCGCTCTTCTTTTGAGTTTGTTCTCGTATTTTCTTTTTGTTATCACCTCATTTTGCCTGCGACAGCGACGGAGGACGAGGTTCGGTTGCGCGCTGCACAATGGGACCAAGAACCCTCGGACTATGTGGCATTGGCCGAGCGCTACTTAGGGTTTCAACAGCCTGGTTCGATCTATGGCTTTGTCGATGCTGGAAATGGGTACAAGAGGGTTTGTGCTTACTCCATTTCGTATTCTTATTTGGTTTTTTTTTGCTCCCTTAGTCGATACTGATAAGGCAATAGAATTTTTTTTGGGCATTGTTCGTTGTATAGGTACTAGGAAACAGACGATCGGCTCACATTTTGATTTTTAATTCGCCTCTTTGAACGCCTTTATTGTTGTTAAAGAGTAAATTGAATGGAAATCTGGATTGTGGCTGAATAGTTTTAGCTTCCAGGTCTACTAGTGAGTTAACTGCAATGTGGTAATAGAGTATTGAAAAAACCAATATTTTAAAAAAATGTAGGTTCAAAACAACCTCTATAAGCTTATATGCGAGGCCGAAGAAAAGGGAAGAACTTTTGTTTATGAAGCATAAAATTGGAGAATAAAGACATTTTCGAGAGATTCTTAAAAGAGTTTGATGTTCTCTTCTTATTTCTTTAAGATGGGAAACTAAAAAGAGAGTACCTTTAAGATGAAGTGAAGTGACTTTTTGTGTGCTATGTGCTGAGGCACTTGCACCAACAGGATCAACTAAATATATACAAGAATAAAGAACACTTTTGGTTGCTTAGTTGGGTTGGTGTCTATTTGGGGGTTTCTAAAGGACACTTTAGACCCTTATGTTTAGGAAATGGATTGACATGGCCCTTGAACATCTTTGACCATTAAAAACTAATGTTAAGATGATGTGGCAGTTAAATTATAAACAACATTTTCTAATATGGGGAGATATTTTAATTTAAATATATATTTTTATGACTAAAATTACTCTCTTTCCACGTTATTTCCTCCTATGGTGAATCTTTTAGTTGCTCGCCAATGCTCTTCTTATGATGATTAAAGTGTTTATTGTGAAATCTCATCGACCAAATAGATACTAACTTCATATTTTAGGATCCAAAAGTGTAGTTTGTCTAGTATACTATTATATCAGGTTAAGCTTGGTTGAAAATTTTAAATCTACTATAAATATAGGAATTCAATTATAATCATCAATCTATTTGGGTGAGTTGGTTTCGAAATCTCATATACCAAATAGACAACACTTTGTAGTTTAGGGGTGAAAAGTGTAGTTTGTCAATACTCTATGTCACTAGGTTGAGCTTGGTTAAAACTTTTGAGTCTAGTTTAAATTTAAGAATTTGATTATAATCAACAGTCTCTTTGGGTGAACTTGGTAGTTTTGATACAAGAATATTGTGAATTTGGAAGAGGGATTCAGTTATCTTAATATTAAAGCTTGGGTTTTCATTTTAACTTTGGAGCATATTGATTGGCACTTTGTACTGGTTCTTATGCAGCTTTCTTGGACATTTGACAAAGAAGGGATGAAGTTAGAATGGCGATGGAAGTGTCAACCAGCGTCTGATAATAAGACCACTACAGCAGGAATATTGAACTTTCTTATGGATGCAAACATAAGGCTGAGCGTAATACTATGCCTCCTTGTTGTGTTTACAATGTTTTAGATTTTCTCAAGGTTACTTCTATGCAGCTATTAGCCATACTTCTCATTATTTTTCTGAGCATATTGTTCAATGATTAATAGTTGCTTATTATCGATTTACATGAATGGATTAACAAGATTGATAGTTTCCCTATCCAAGAAAAGGAAAATTACTGATGGTCTCCTATTTGATGACCATTGCCCATTGGATTGGAGTTTTTGTTACAGCATTGTTTTTCTACAGTGAAGGACGCTAAAGTTGAATAGCTTTAGCACATGACTTGTAAAAAAATGATCACAGCCCTCTGTTTGCTTCTGTTATGTGATTGCTGTCTGAACACGTGGATAGTTTTTTTATCTTTTCCAAGCTCTGATATGGTCTTAGAAACATTAGTTACCATGTAAATTACCGAAGTACATTCATTTATTAAAAAGAGTATGATTTGAAAGTCTATGAGACTCCAAGTCATTCTTTATTTGAAGTGTTGCTTTTGTCATTCTGATTTCCTCTCTGTCACACTATGGCCTTTTTCTTAAAGATGTTCAGTTGTCAACCTTTTCTTATAACTTATGCCTGCTTTGTTTTTTTTGAATAGGAAGAGGTTGTGAGAAAAAATCAATCAGTTGAGAGGCTGAAGGCGGAATCTGAGAAGTGTTTAGCTCAGAGTGAGAAGATTTGTGATGAAAAGGTGGAGTTTGAAACTGCAATATATGCAAAGGTACGGAAAATTTCATAACTTATGATTTGAACTTCACTCTATCTGTTTTCATCTTTGTGATCTTAGTCAGTGTGAAACCATTCTGAATTAACTCTTCTTCAGAAATCATGCTACATTTTAGCTTCAAAAGTGCAACATGATGCAATAAGTACATTTTCATTTTATTAACGCAGAAAATTGTCTTTGTGGTAAGAAAAATTATTGTTCACATAATTGTGTTCTCTTTGTAACATAGTTATATTAATCCTAAACCCAAAACCCTCCTTGAATTGACCGGTAGCTACTTCTTTGCAAATGTTGTTTGCAATCTATATTATCACCGGTGCGACCTGGAGTCTTTACACAACGCACCACTTGTTTCTTACATGAAATCTTTAAATGTCTTTTTCATTGCTTCCAGTTTCTGAATGTCTTGAACGCAAAGAAGGCAAAGCTTAGAGAGTACAGAGATCAGCTTTCAAAACAAACCACTACTGGTAGCAAACTGAAACAAGAAGAGTACTCATCTGATAAAACTGAATCTTTCGACGATGAAAGCGATGCAGAAAAGAACTGA

mRNA sequence

ATGGACGCAATCAGGCACACATGCCTGAAGCTTGAAGTTCCAACCAACGCCCAGCCCAACGAAAGAAGCTCCATCTTCGTCAAAGGCACTTGGAATCATCTCCGCTTCGATCTCTCCATCACCGACGCCCTCCACGCTTGGACGTGCCATGCGACGGAGGACGAGGTTCGGTTGCGCGCTGCACAATGGGACCAAGAACCCTCGGACTATGTGGCATTGGCCGAGCGCTACTTAGGGTTTCAACAGCCTGGTTCGATCTATGGCTTTGTCGATGCTGGAAATGGGTACAAGAGGCTTTCTTGGACATTTGACAAAGAAGGGATGAAGTTAGAATGGCGATGGAAGTGTCAACCAGCGTCTGATAATAAGACCACTACAGCAGGAATATTGAACTTTCTTATGGATGCAAACATAAGGCTGAGCGAAGAGGTTGTGAGAAAAAATCAATCAGTTGAGAGGCTGAAGGCGGAATCTGAGAAGTGTTTAGCTCAGAGTGAGAAGATTTGTGATGAAAAGGTGGAGTTTGAAACTGCAATATATGCAAAGTTTCTGAATGTCTTGAACGCAAAGAAGGCAAAGCTTAGAGAGTACAGAGATCAGCTTTCAAAACAAACCACTACTGGTAGCAAACTGAAACAAGAAGAGTACTCATCTGATAAAACTGAATCTTTCGACGATGAAAGCGATGCAGAAAAGAACTGA

Coding sequence (CDS)

ATGGACGCAATCAGGCACACATGCCTGAAGCTTGAAGTTCCAACCAACGCCCAGCCCAACGAAAGAAGCTCCATCTTCGTCAAAGGCACTTGGAATCATCTCCGCTTCGATCTCTCCATCACCGACGCCCTCCACGCTTGGACGTGCCATGCGACGGAGGACGAGGTTCGGTTGCGCGCTGCACAATGGGACCAAGAACCCTCGGACTATGTGGCATTGGCCGAGCGCTACTTAGGGTTTCAACAGCCTGGTTCGATCTATGGCTTTGTCGATGCTGGAAATGGGTACAAGAGGCTTTCTTGGACATTTGACAAAGAAGGGATGAAGTTAGAATGGCGATGGAAGTGTCAACCAGCGTCTGATAATAAGACCACTACAGCAGGAATATTGAACTTTCTTATGGATGCAAACATAAGGCTGAGCGAAGAGGTTGTGAGAAAAAATCAATCAGTTGAGAGGCTGAAGGCGGAATCTGAGAAGTGTTTAGCTCAGAGTGAGAAGATTTGTGATGAAAAGGTGGAGTTTGAAACTGCAATATATGCAAAGTTTCTGAATGTCTTGAACGCAAAGAAGGCAAAGCTTAGAGAGTACAGAGATCAGCTTTCAAAACAAACCACTACTGGTAGCAAACTGAAACAAGAAGAGTACTCATCTGATAAAACTGAATCTTTCGACGATGAAAGCGATGCAGAAAAGAACTGA

Protein sequence

MDAIRHTCLKLEVPTNAQPNERSSIFVKGTWNHLRFDLSITDALHAWTCHATEDEVRLRAAQWDQEPSDYVALAERYLGFQQPGSIYGFVDAGNGYKRLSWTFDKEGMKLEWRWKCQPASDNKTTTAGILNFLMDANIRLSEEVVRKNQSVERLKAESEKCLAQSEKICDEKVEFETAIYAKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN*

Homology

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BLAST of Chy1G002350 vs. ExPASy Swiss-Prot
Match: Q682V0 (DNA repair protein XRCC4 OS=Arabidopsis thaliana OX=3702 GN=XRCC4 PE=1 SV=2)

HSP 1 Score: 271.6 bits (693), Expect = 8.6e-72
Identity = 139/230 (60.43%), Postives = 177/230 (76.96%), Query Frame = 0


Query: 5   RHTCLKLEVPTNAQPNERSSIFVKGTWNHLRFDLSITDALHAWTCHATEDEVRLRAAQWD 64
           +HTCL+LE+ + A P     IFVKGTW++ RFD+S+TD   +W C+ATE+EV  RAAQWD
Sbjct: 24  KHTCLRLEI-SGADP-----IFVKGTWHNSRFDISVTDGSSSWICNATEEEVAERAAQWD 83

Query: 65  QEPSDYVALAERYLGFQQPGSIYGFVDAGNGYKRLSWTFDKEGMKLEWRWKCQPASDNKT 124
           Q  S+Y+ LAE+YLGFQQP S+Y F DA  G KRLSWTF+KEG KLEWRWKC+P+ D+K 
Sbjct: 84  QPVSEYLKLAEQYLGFQQPNSVYSFSDALEGSKRLSWTFEKEGTKLEWRWKCKPSDDSKK 143

Query: 125 TTAGILNFLMDANIRLSEEVVRKNQSVERLKAESEKCLAQSEKICDEKVEFETAIYAKFL 184
            T GIL+FLM+ANIRLSEEVV K +S E++++E+E+CLAQ EK+CDEK EFE+A YAKFL
Sbjct: 144 ITVGILDFLMEANIRLSEEVVNKTRSFEKMRSEAERCLAQGEKLCDEKTEFESATYAKFL 203

Query: 185 NVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDD-ESDAEKN 234
           +VLNAKKAKLR  RD+         ++ +EE S+DK ESF+   SD EK+
Sbjct: 204 SVLNAKKAKLRALRDK-----EDSVRVVEEEESTDKAESFESGRSDDEKS 242

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BLAST of Chy1G002350 vs. ExPASy TrEMBL
Match: A0A0A0K2L2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G064000 PE=4 SV=1)

HSP 1 Score: 458.0 bits (1177), Expect = 2.4e-125
Identity = 227/233 (97.42%), Postives = 228/233 (97.85%), Query Frame = 0


Query: 1   MDAIRHTCLKLEVPTNAQPNERSSIFVKGTWNHLRFDLSITDALHAWTCHATEDEVRLRA 60
           MDAIRHTCLKLEVPTNAQPNERSSIFVKGTWNHLRFDLSITD  HAWTCHATEDEVRLRA
Sbjct: 1   MDAIRHTCLKLEVPTNAQPNERSSIFVKGTWNHLRFDLSITDGFHAWTCHATEDEVRLRA 60

Query: 61  AQWDQEPSDYVALAERYLGFQQPGSIYGFVDAGNGYKRLSWTFDKEGMKLEWRWKCQPAS 120
           AQWDQEPSDYVALAERYLGFQQPGSIY F DAGNGYKRLSWTFDKEGMKLEWRWKCQPAS
Sbjct: 61  AQWDQEPSDYVALAERYLGFQQPGSIYDFADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS 120

Query: 121 DNKTTTAGILNFLMDANIRLSEEVVRKNQSVERLKAESEKCLAQSEKICDEKVEFETAIY 180
           DNKTTTAGILNFLMDANIRLSEEVVRKNQSVERLKAESEKCLAQSEKICDEKVEFETAIY
Sbjct: 121 DNKTTTAGILNFLMDANIRLSEEVVRKNQSVERLKAESEKCLAQSEKICDEKVEFETAIY 180

Query: 181 AKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN 234
           AKFLNVLNAKKAKLREYRDQLS+QT TGSKLKQEEYSSDKTESFDDESDAEKN
Sbjct: 181 AKFLNVLNAKKAKLREYRDQLSRQTITGSKLKQEEYSSDKTESFDDESDAEKN 233

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BLAST of Chy1G002350 vs. ExPASy TrEMBL
Match: A0A5A7SK69 (DNA repair protein XRCC4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G002240 PE=4 SV=1)

HSP 1 Score: 455.7 bits (1171), Expect = 1.2e-124
Identity = 227/233 (97.42%), Postives = 228/233 (97.85%), Query Frame = 0


Query: 1   MDAIRHTCLKLEVPTNAQPNERSSIFVKGTWNHLRFDLSITDALHAWTCHATEDEVRLRA 60
           MDAIRHTCLKLEVPTNAQP+ERSSIFVKGTWNH RFDLSITD LHAWTCHATEDEVRLRA
Sbjct: 1   MDAIRHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRA 60

Query: 61  AQWDQEPSDYVALAERYLGFQQPGSIYGFVDAGNGYKRLSWTFDKEGMKLEWRWKCQPAS 120
           AQWDQEPSDYVALAERYLGFQQPGSIYGF DAGNGYKRLSWTFDKEGMKLEWRWKCQPAS
Sbjct: 61  AQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS 120

Query: 121 DNKTTTAGILNFLMDANIRLSEEVVRKNQSVERLKAESEKCLAQSEKICDEKVEFETAIY 180
           DNKTTTA ILNFLMDANIRLSEEVVRK QSVERLKAESEKCLAQSEKICDEKVEFETAIY
Sbjct: 121 DNKTTTAEILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIY 180

Query: 181 AKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN 234
           AKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN
Sbjct: 181 AKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN 233

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BLAST of Chy1G002350 vs. ExPASy TrEMBL
Match: A0A1S3BZW1 (DNA repair protein XRCC4 OS=Cucumis melo OX=3656 GN=LOC103495407 PE=4 SV=1)

HSP 1 Score: 455.7 bits (1171), Expect = 1.2e-124
Identity = 227/233 (97.42%), Postives = 228/233 (97.85%), Query Frame = 0


Query: 1   MDAIRHTCLKLEVPTNAQPNERSSIFVKGTWNHLRFDLSITDALHAWTCHATEDEVRLRA 60
           MDAIRHTCLKLEVPTNAQP+ERSSIFVKGTWNH RFDLSITD LHAWTCHATEDEVRLRA
Sbjct: 1   MDAIRHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRA 60

Query: 61  AQWDQEPSDYVALAERYLGFQQPGSIYGFVDAGNGYKRLSWTFDKEGMKLEWRWKCQPAS 120
           AQWDQEPSDYVALAERYLGFQQPGSIYGF DAGNGYKRLSWTFDKEGMKLEWRWKCQPAS
Sbjct: 61  AQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS 120

Query: 121 DNKTTTAGILNFLMDANIRLSEEVVRKNQSVERLKAESEKCLAQSEKICDEKVEFETAIY 180
           DNKTTTA ILNFLMDANIRLSEEVVRK QSVERLKAESEKCLAQSEKICDEKVEFETAIY
Sbjct: 121 DNKTTTAEILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIY 180

Query: 181 AKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN 234
           AKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN
Sbjct: 181 AKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN 233

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BLAST of Chy1G002350 vs. ExPASy TrEMBL
Match: A0A6J1GJL0 (DNA repair protein XRCC4 OS=Cucurbita moschata OX=3662 GN=LOC111454947 PE=4 SV=1)

HSP 1 Score: 400.2 bits (1027), Expect = 5.9e-108
Identity = 198/233 (84.98%), Postives = 212/233 (90.99%), Query Frame = 0


Query: 1   MDAIRHTCLKLEVPTNAQPNERSSIFVKGTWNHLRFDLSITDALHAWTCHATEDEVRLRA 60
           MDAIRHTCLKLEVPTNAQP+ R SIFVKGTW   RFDLSITD L+AWTCHATEDEVRLRA
Sbjct: 1   MDAIRHTCLKLEVPTNAQPDGRVSIFVKGTWYQHRFDLSITDGLNAWTCHATEDEVRLRA 60

Query: 61  AQWDQEPSDYVALAERYLGFQQPGSIYGFVDAGNGYKRLSWTFDKEGMKLEWRWKCQPAS 120
            QWDQEPSDYV+LAERYLGFQQP S+YGF D GNG KRLSWTF+KEGMKLEWRWKC+ AS
Sbjct: 61  EQWDQEPSDYVSLAERYLGFQQPDSVYGFADVGNGDKRLSWTFNKEGMKLEWRWKCRQAS 120

Query: 121 DNKTTTAGILNFLMDANIRLSEEVVRKNQSVERLKAESEKCLAQSEKICDEKVEFETAIY 180
           DNKTTTAGIL+FLMDANIRLSEEVVRK QS E+LK ESEKCLAQSE+IC+EKVEFETA+Y
Sbjct: 121 DNKTTTAGILDFLMDANIRLSEEVVRKTQSFEKLKVESEKCLAQSERICEEKVEFETALY 180

Query: 181 AKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN 234
           AKFLNVLN KKAKLREYRDQ  KQTTT SKLKQ++  SDKTESFDD+SDAEKN
Sbjct: 181 AKFLNVLNTKKAKLREYRDQFPKQTTTSSKLKQDDEYSDKTESFDDDSDAEKN 233

[Close]

BLAST of Chy1G002350 vs. ExPASy TrEMBL
Match: A0A6J1I7A5 (DNA repair protein XRCC4 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111470647 PE=4 SV=1)

HSP 1 Score: 397.1 bits (1019), Expect = 5.0e-107
Identity = 197/233 (84.55%), Postives = 210/233 (90.13%), Query Frame = 0


Query: 1   MDAIRHTCLKLEVPTNAQPNERSSIFVKGTWNHLRFDLSITDALHAWTCHATEDEVRLRA 60
           MDAIRHTCLKLEVPTNAQP+ R SIFVKGTW   RFDLSITD L+AWTCHATEDEVRLRA
Sbjct: 1   MDAIRHTCLKLEVPTNAQPDGRVSIFVKGTWYQHRFDLSITDGLNAWTCHATEDEVRLRA 60

Query: 61  AQWDQEPSDYVALAERYLGFQQPGSIYGFVDAGNGYKRLSWTFDKEGMKLEWRWKCQPAS 120
            QWDQEPSDYV LAERYLGFQQP S+Y F D GNG KRLSWTF+KEGMKLEWRWKC+ AS
Sbjct: 61  EQWDQEPSDYVGLAERYLGFQQPDSVYDFADVGNGDKRLSWTFNKEGMKLEWRWKCRQAS 120

Query: 121 DNKTTTAGILNFLMDANIRLSEEVVRKNQSVERLKAESEKCLAQSEKICDEKVEFETAIY 180
           DNKTTTAGIL+FLMDANIRLSEEVVRK QS E+LK ESEKCLAQSE+IC+EKVEFETA+Y
Sbjct: 121 DNKTTTAGILDFLMDANIRLSEEVVRKTQSFEKLKVESEKCLAQSERICEEKVEFETALY 180

Query: 181 AKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN 234
           AKFLNVLN KKAKLREYRDQ  KQTTT SKLKQ++  SDKTESFDD+SDAEKN
Sbjct: 181 AKFLNVLNTKKAKLREYRDQFPKQTTTSSKLKQDDEYSDKTESFDDDSDAEKN 233

[Close]

BLAST of Chy1G002350 vs. NCBI nr
Match: XP_004136882.1 (DNA repair protein XRCC4 [Cucumis sativus] >KGN43738.1 hypothetical protein Csa_017256 [Cucumis sativus])

HSP 1 Score: 454 bits (1168), Expect = 7.64e-161
Identity = 227/233 (97.42%), Postives = 228/233 (97.85%), Query Frame = 0


Query: 1   MDAIRHTCLKLEVPTNAQPNERSSIFVKGTWNHLRFDLSITDALHAWTCHATEDEVRLRA 60
           MDAIRHTCLKLEVPTNAQPNERSSIFVKGTWNHLRFDLSITD  HAWTCHATEDEVRLRA
Sbjct: 1   MDAIRHTCLKLEVPTNAQPNERSSIFVKGTWNHLRFDLSITDGFHAWTCHATEDEVRLRA 60

Query: 61  AQWDQEPSDYVALAERYLGFQQPGSIYGFVDAGNGYKRLSWTFDKEGMKLEWRWKCQPAS 120
           AQWDQEPSDYVALAERYLGFQQPGSIY F DAGNGYKRLSWTFDKEGMKLEWRWKCQPAS
Sbjct: 61  AQWDQEPSDYVALAERYLGFQQPGSIYDFADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS 120

Query: 121 DNKTTTAGILNFLMDANIRLSEEVVRKNQSVERLKAESEKCLAQSEKICDEKVEFETAIY 180
           DNKTTTAGILNFLMDANIRLSEEVVRKNQSVERLKAESEKCLAQSEKICDEKVEFETAIY
Sbjct: 121 DNKTTTAGILNFLMDANIRLSEEVVRKNQSVERLKAESEKCLAQSEKICDEKVEFETAIY 180

Query: 181 AKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN 233
           AKFLNVLNAKKAKLREYRDQLS+QT TGSKLKQEEYSSDKTESFDDESDAEKN
Sbjct: 181 AKFLNVLNAKKAKLREYRDQLSRQTITGSKLKQEEYSSDKTESFDDESDAEKN 233

[Close]

BLAST of Chy1G002350 vs. NCBI nr
Match: XP_008455175.1 (PREDICTED: DNA repair protein XRCC4 [Cucumis melo] >KAA0031462.1 DNA repair protein XRCC4 [Cucumis melo var. makuwa] >TYK06916.1 DNA repair protein XRCC4 [Cucumis melo var. makuwa])

HSP 1 Score: 452 bits (1162), Expect = 6.28e-160
Identity = 227/233 (97.42%), Postives = 228/233 (97.85%), Query Frame = 0


Query: 1   MDAIRHTCLKLEVPTNAQPNERSSIFVKGTWNHLRFDLSITDALHAWTCHATEDEVRLRA 60
           MDAIRHTCLKLEVPTNAQP+ERSSIFVKGTWNH RFDLSITD LHAWTCHATEDEVRLRA
Sbjct: 1   MDAIRHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRA 60

Query: 61  AQWDQEPSDYVALAERYLGFQQPGSIYGFVDAGNGYKRLSWTFDKEGMKLEWRWKCQPAS 120
           AQWDQEPSDYVALAERYLGFQQPGSIYGF DAGNGYKRLSWTFDKEGMKLEWRWKCQPAS
Sbjct: 61  AQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS 120

Query: 121 DNKTTTAGILNFLMDANIRLSEEVVRKNQSVERLKAESEKCLAQSEKICDEKVEFETAIY 180
           DNKTTTA ILNFLMDANIRLSEEVVRK QSVERLKAESEKCLAQSEKICDEKVEFETAIY
Sbjct: 121 DNKTTTAEILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIY 180

Query: 181 AKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN 233
           AKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN
Sbjct: 181 AKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN 233

[Close]

BLAST of Chy1G002350 vs. NCBI nr
Match: XP_038888651.1 (DNA repair protein XRCC4 [Benincasa hispida])

HSP 1 Score: 429 bits (1104), Expect = 4.36e-151
Identity = 214/233 (91.85%), Postives = 223/233 (95.71%), Query Frame = 0


Query: 1   MDAIRHTCLKLEVPTNAQPNERSSIFVKGTWNHLRFDLSITDALHAWTCHATEDEVRLRA 60
           MDA RHTCLKLEVPTNAQPN+RSSIFVKGTWNH  FDLSITD L+AW+CHATEDEV LRA
Sbjct: 1   MDATRHTCLKLEVPTNAQPNDRSSIFVKGTWNHHHFDLSITDGLNAWSCHATEDEVLLRA 60

Query: 61  AQWDQEPSDYVALAERYLGFQQPGSIYGFVDAGNGYKRLSWTFDKEGMKLEWRWKCQPAS 120
           AQWDQEPSDYVALAERYLGFQQPGS+YGF DAGNG +RLSWTFDKEGMKLEWRWKC+PAS
Sbjct: 61  AQWDQEPSDYVALAERYLGFQQPGSVYGFTDAGNGDRRLSWTFDKEGMKLEWRWKCKPAS 120

Query: 121 DNKTTTAGILNFLMDANIRLSEEVVRKNQSVERLKAESEKCLAQSEKICDEKVEFETAIY 180
           DNKTTTAGIL+FLMDANIRLSEEVVRK Q  ERLK+ESE+CLAQSEKICDEKVEFETAIY
Sbjct: 121 DNKTTTAGILDFLMDANIRLSEEVVRKTQLFERLKSESERCLAQSEKICDEKVEFETAIY 180

Query: 181 AKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN 233
           AKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN
Sbjct: 181 AKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN 233

[Close]

BLAST of Chy1G002350 vs. NCBI nr
Match: XP_022952201.1 (DNA repair protein XRCC4 [Cucurbita moschata])

HSP 1 Score: 396 bits (1018), Expect = 5.57e-138
Identity = 198/233 (84.98%), Postives = 212/233 (90.99%), Query Frame = 0


Query: 1   MDAIRHTCLKLEVPTNAQPNERSSIFVKGTWNHLRFDLSITDALHAWTCHATEDEVRLRA 60
           MDAIRHTCLKLEVPTNAQP+ R SIFVKGTW   RFDLSITD L+AWTCHATEDEVRLRA
Sbjct: 1   MDAIRHTCLKLEVPTNAQPDGRVSIFVKGTWYQHRFDLSITDGLNAWTCHATEDEVRLRA 60

Query: 61  AQWDQEPSDYVALAERYLGFQQPGSIYGFVDAGNGYKRLSWTFDKEGMKLEWRWKCQPAS 120
            QWDQEPSDYV+LAERYLGFQQP S+YGF D GNG KRLSWTF+KEGMKLEWRWKC+ AS
Sbjct: 61  EQWDQEPSDYVSLAERYLGFQQPDSVYGFADVGNGDKRLSWTFNKEGMKLEWRWKCRQAS 120

Query: 121 DNKTTTAGILNFLMDANIRLSEEVVRKNQSVERLKAESEKCLAQSEKICDEKVEFETAIY 180
           DNKTTTAGIL+FLMDANIRLSEEVVRK QS E+LK ESEKCLAQSE+IC+EKVEFETA+Y
Sbjct: 121 DNKTTTAGILDFLMDANIRLSEEVVRKTQSFEKLKVESEKCLAQSERICEEKVEFETALY 180

Query: 181 AKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN 233
           AKFLNVLN KKAKLREYRDQ  KQTTT SKLKQ++  SDKTESFDD+SDAEKN
Sbjct: 181 AKFLNVLNTKKAKLREYRDQFPKQTTTSSKLKQDDEYSDKTESFDDDSDAEKN 233

[Close]

BLAST of Chy1G002350 vs. NCBI nr
Match: XP_022971995.1 (DNA repair protein XRCC4 isoform X1 [Cucurbita maxima])

HSP 1 Score: 393 bits (1010), Expect = 9.22e-137
Identity = 197/233 (84.55%), Postives = 210/233 (90.13%), Query Frame = 0


Query: 1   MDAIRHTCLKLEVPTNAQPNERSSIFVKGTWNHLRFDLSITDALHAWTCHATEDEVRLRA 60
           MDAIRHTCLKLEVPTNAQP+ R SIFVKGTW   RFDLSITD L+AWTCHATEDEVRLRA
Sbjct: 1   MDAIRHTCLKLEVPTNAQPDGRVSIFVKGTWYQHRFDLSITDGLNAWTCHATEDEVRLRA 60

Query: 61  AQWDQEPSDYVALAERYLGFQQPGSIYGFVDAGNGYKRLSWTFDKEGMKLEWRWKCQPAS 120
            QWDQEPSDYV LAERYLGFQQP S+Y F D GNG KRLSWTF+KEGMKLEWRWKC+ AS
Sbjct: 61  EQWDQEPSDYVGLAERYLGFQQPDSVYDFADVGNGDKRLSWTFNKEGMKLEWRWKCRQAS 120

Query: 121 DNKTTTAGILNFLMDANIRLSEEVVRKNQSVERLKAESEKCLAQSEKICDEKVEFETAIY 180
           DNKTTTAGIL+FLMDANIRLSEEVVRK QS E+LK ESEKCLAQSE+IC+EKVEFETA+Y
Sbjct: 121 DNKTTTAGILDFLMDANIRLSEEVVRKTQSFEKLKVESEKCLAQSERICEEKVEFETALY 180

Query: 181 AKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN 233
           AKFLNVLN KKAKLREYRDQ  KQTTT SKLKQ++  SDKTESFDD+SDAEKN
Sbjct: 181 AKFLNVLNTKKAKLREYRDQFPKQTTTSSKLKQDDEYSDKTESFDDDSDAEKN 233

[Close]

BLAST of Chy1G002350 vs. TAIR 10
Match: AT3G23100.1 (homolog of human DNA ligase iv-binding protein XRCC4 )

HSP 1 Score: 271.6 bits (693), Expect = 6.1e-73
Identity = 139/230 (60.43%), Postives = 177/230 (76.96%), Query Frame = 0


Query: 5   RHTCLKLEVPTNAQPNERSSIFVKGTWNHLRFDLSITDALHAWTCHATEDEVRLRAAQWD 64
           +HTCL+LE+ + A P     IFVKGTW++ RFD+S+TD   +W C+ATE+EV  RAAQWD
Sbjct: 24  KHTCLRLEI-SGADP-----IFVKGTWHNSRFDISVTDGSSSWICNATEEEVAERAAQWD 83

Query: 65  QEPSDYVALAERYLGFQQPGSIYGFVDAGNGYKRLSWTFDKEGMKLEWRWKCQPASDNKT 124
           Q  S+Y+ LAE+YLGFQQP S+Y F DA  G KRLSWTF+KEG KLEWRWKC+P+ D+K 
Sbjct: 84  QPVSEYLKLAEQYLGFQQPNSVYSFSDALEGSKRLSWTFEKEGTKLEWRWKCKPSDDSKK 143

Query: 125 TTAGILNFLMDANIRLSEEVVRKNQSVERLKAESEKCLAQSEKICDEKVEFETAIYAKFL 184
            T GIL+FLM+ANIRLSEEVV K +S E++++E+E+CLAQ EK+CDEK EFE+A YAKFL
Sbjct: 144 ITVGILDFLMEANIRLSEEVVNKTRSFEKMRSEAERCLAQGEKLCDEKTEFESATYAKFL 203

Query: 185 NVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDD-ESDAEKN 234
           +VLNAKKAKLR  RD+         ++ +EE S+DK ESF+   SD EK+
Sbjct: 204 SVLNAKKAKLRALRDK-----EDSVRVVEEEESTDKAESFESGRSDDEKS 242

[Close]

BLAST of Chy1G002350 vs. TAIR 10
Match: AT3G23100.2 (homolog of human DNA ligase iv-binding protein XRCC4 )

HSP 1 Score: 271.6 bits (693), Expect = 6.1e-73
Identity = 139/230 (60.43%), Postives = 177/230 (76.96%), Query Frame = 0


Query: 5   RHTCLKLEVPTNAQPNERSSIFVKGTWNHLRFDLSITDALHAWTCHATEDEVRLRAAQWD 64
           +HTCL+LE+ + A P     IFVKGTW++ RFD+S+TD   +W C+ATE+EV  RAAQWD
Sbjct: 24  KHTCLRLEI-SGADP-----IFVKGTWHNSRFDISVTDGSSSWICNATEEEVAERAAQWD 83

Query: 65  QEPSDYVALAERYLGFQQPGSIYGFVDAGNGYKRLSWTFDKEGMKLEWRWKCQPASDNKT 124
           Q  S+Y+ LAE+YLGFQQP S+Y F DA  G KRLSWTF+KEG KLEWRWKC+P+ D+K 
Sbjct: 84  QPVSEYLKLAEQYLGFQQPNSVYSFSDALEGSKRLSWTFEKEGTKLEWRWKCKPSDDSKK 143

Query: 125 TTAGILNFLMDANIRLSEEVVRKNQSVERLKAESEKCLAQSEKICDEKVEFETAIYAKFL 184
            T GIL+FLM+ANIRLSEEVV K +S E++++E+E+CLAQ EK+CDEK EFE+A YAKFL
Sbjct: 144 ITVGILDFLMEANIRLSEEVVNKTRSFEKMRSEAERCLAQGEKLCDEKTEFESATYAKFL 203

Query: 185 NVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDD-ESDAEKN 234
           +VLNAKKAKLR  RD+         ++ +EE S+DK ESF+   SD EK+
Sbjct: 204 SVLNAKKAKLRALRDK-----EDSVRVVEEEESTDKAESFESGRSDDEKS 242

[Close]

BLAST of Chy1G002350 vs. TAIR 10
Match: AT1G61410.1 (DNA double-strand break repair and VJ recombination XRCC4 )

HSP 1 Score: 96.3 bits (238), Expect = 3.5e-20
Identity = 59/104 (56.73%), Postives = 73/104 (70.19%), Query Frame = 0


Query: 134 MDANIRLSEEVVRKNQSVERLKAESEKCLAQSEKICDEKVEFETAIYAKFLNVLNAKKAK 193
           M+ANIRLSEEVV K +S E++K+E+E+CLAQ EK+CDEK EFE A YAKFL+VLNAKKAK
Sbjct: 1   MEANIRLSEEVVNKTRSFEKMKSEAERCLAQGEKLCDEKTEFENATYAKFLSVLNAKKAK 60

Query: 194 LREYRDQLSKQTTTGSKLKQEEYSSDKTESF-----DDESDAEK 233
           LR  RD+         +  +EE S+ K ESF     DDE   E+
Sbjct: 61  LRAVRDK-----EDSVRAVEEEESTYKAESFESGRSDDEQSGEE 99

The following BLAST results are available for this feature:

BLAST of Chy1G002350 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q682V0	8.6e-72	60.43	DNA repair protein XRCC4 OS=Arabidopsis thaliana OX=3702 GN=XRCC4 PE=1 SV=2	[more]

BLAST of Chy1G002350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K2L2	2.4e-125	97.42	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G064000 PE=4 SV=1	[more]
A0A5A7SK69	1.2e-124	97.42	DNA repair protein XRCC4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3BZW1	1.2e-124	97.42	DNA repair protein XRCC4 OS=Cucumis melo OX=3656 GN=LOC103495407 PE=4 SV=1	[more]
A0A6J1GJL0	5.9e-108	84.98	DNA repair protein XRCC4 OS=Cucurbita moschata OX=3662 GN=LOC111454947 PE=4 SV=1	[more]
A0A6J1I7A5	5.0e-107	84.55	DNA repair protein XRCC4 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111470647 ...	[more]

BLAST of Chy1G002350 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004136882.1	7.64e-161	97.42	DNA repair protein XRCC4 [Cucumis sativus] >KGN43738.1 hypothetical protein Csa_...	[more]
XP_008455175.1	6.28e-160	97.42	PREDICTED: DNA repair protein XRCC4 [Cucumis melo] >KAA0031462.1 DNA repair prot...	[more]
XP_038888651.1	4.36e-151	91.85	DNA repair protein XRCC4 [Benincasa hispida]	[more]
XP_022952201.1	5.57e-138	84.98	DNA repair protein XRCC4 [Cucurbita moschata]	[more]
XP_022971995.1	9.22e-137	84.55	DNA repair protein XRCC4 isoform X1 [Cucurbita maxima]	[more]

BLAST of Chy1G002350 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G23100.1	6.1e-73	60.43	homolog of human DNA ligase iv-binding protein XRCC4	[more]
AT3G23100.2	6.1e-73	60.43	homolog of human DNA ligase iv-binding protein XRCC4	[more]
AT1G61410.1	3.5e-20	56.73	DNA double-strand break repair and VJ recombination XRCC4	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 184..207
None	No IPR available	COILS	Coil	Coil	coord: 137..157
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 213..233
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 199..233
None	No IPR available	SUPERFAMILY	58022	XRCC4, C-terminal oligomerization domain	coord: 122..207
IPR014751	DNA repair protein XRCC4-like, C-terminal	GENE3D	1.20.5.370		coord: 120..216 e-value: 6.7E-15 score: 56.9
IPR010585	DNA repair protein XRCC4	PFAM	PF06632	XRCC4	coord: 36..228 e-value: 1.1E-12 score: 47.5
IPR010585	DNA repair protein XRCC4	PANTHER	PTHR28559	DNA REPAIR PROTEIN XRCC4	coord: 2..232

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy1G002350.1	Chy1G002350.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051103	DNA ligation involved in DNA repair
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006303	double-strand break repair via nonhomologous end joining
biological_process	GO:0051351	positive regulation of ligase activity
biological_process	GO:0010165	response to X-ray
biological_process	GO:0006302	double-strand break repair
cellular_component	GO:0005958	DNA-dependent protein kinase-DNA ligase 4 complex
cellular_component	GO:0032807	DNA ligase IV complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0016874	ligase activity