Chy1G000270 (gene) Cucumber (hystrix) v1

Overview
NameChy1G000270
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH01: 185702 .. 188247 (-)
RNA-Seq ExpressionChy1G000270
SyntenyChy1G000270
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGCTTCAGAGATTAGAACTTTGTTTGGAGCTGCTGCGAATGGCTATCAATTTCGTCGTGGTCGTTGCCGAATCCGTGGGCGACGTTATCCACCGGGAATGTCAACCGCAAGCTCTGCCGACGGCGGGCGGTAGGGTTCCGGTTCCTTTTGTGGGCTTTTACCCCTAAATTCATCCTCCGCTGCCGTCCGCGGCGGCGATGTGGCGATGTTCGTTCAAAGTTAGTGTGAATTTTGTTTTTTTTTTTTTGTTTAGTAATTAAATGGAGGTATTATTGTAATTGATCTCTCTCTTGGAAATAATCCAATTATGTTCTTTTTTTAGTACGAAATTACTCTCTCTCTCTCTCTCTCTCTTATTTGGGTTAGTACGAAACTATCGAATTGTTATTTGGTTGTAATCTGTTGGCTTTATCGTCATTTTGACGCCGGACCTGAAAGTCGCGCTTTAACTTCAATTATATTCTTTCTTTCTTTCTTTCTTTCTTTTTTTTAAAATGAAAATGTATGCACTGGATGGGTATTTGTGTAAATATTGTTAAATTTAAGGGACGAGGTGTGGAATATGATTATTATCCAATGGCTTATGTGAAATTACAGAATTTTATTTTGTCCACTTCCCCGATTTGAATTGAGTTCTTTCTTTCTTTTTTTTTTTTTTTCTTTTGAAAACGTAATTAAATTGTGATCGGGAAATATGAGGGGAACAAAAGAAAAAACATTTTCTAACGGAGTAAAATAAATTAAAATATTAATAAATTATAGTCAAATTTTGAATTCTATAAATACTTTTTATCACCTTATCAATTTTTTTTAAAAAAATATAAAATTATATATTCATAACAATTAAATTTATTCATGTGGAAAAGTACACTTCAACTTTTTCTTTTTAGTTAGTATAAAAATTATTTTTTATTCCAAAAGTTGGGGTATTGTTCTTTTATTTTCGTAAATAATGTTTCAAAATGGTAAAATTTTGTTATAATTTTATAGAAAACAAGCAATTATTGAAATAATAATAAAAAAAAATTACTTTATTTTTTATTTTTTTTATAATTCTAATAATTCATGAGCTTTTGTATTTTTTTATTGATCTTATTTGAATTGGACATGTGGATGGAGTTTGAAGAGAGCTAAAAGTAATTTAGACAAGTGAGTTAGGTTATATTTGCTTTTTCACTTTAAATATGACTCAATTCAATCTTTGCATAAAGATACCCAAATGGTTATTCTTCCACCCATTGTTATTATTATTACGTAATTTTGAGCTTAATTAAACCTTTTCAACATGTATCTTTATTATCGTTTTGAATTATATAGCTATAGTTTACTGTATCAAGCTTCATATATTTGTTAATGAAAATAGTATTTTTATATATAGTAAAATTATCAACTTATTTACAAATAAAACTAAGTGTAATTTTTTTTTATTTTACCATTAATTTGTCATTTTACTCTATTTAAAAATATTTACGTTATTTTATCATTTAAAATAAACTCAATCAATAAAAACATTTACACTTGGTTAGATAAAAATGGACTTTTGTGTTGAACTTAGAATAAAAAAATTTAGGAAACAAAATATAAATAAGAAAAGTGTTGAACTAAAGTTTTAGTGATATTTGAGTCCAAGATTCATATCAAACTCAGGATCTTGTGCATCCATACAAAATAATTGTTCTTACTTGATATTTTGGATTCAATATAGTCTGCACAAATAATTTTGGTCTACCTAGTTCAATAATTGTTAGTGGAATCTTAAAGATCGACTTTACAAATTAACGTTTTTAATAATTTATGATATAACATAATAGGCAAAATATAAATATATATATATATATATATAATTTCATGGTTCTCAAATCCTACAAAACAATTTTTATTTTCATTTTCTTGAAAAACCAAAACTTCTATTTTTTCAAAAAAAAAAAAAAATACAGCATGGATTAAGATATACATATTGATATGATATATGATTTAATGAATGCTGCTTTCTATACTATACTAACTAACACAGGGAGTGTATAGTTATTAAATCAATAAAATCACGGATACGATTGATGTGTTAGTTTTTAAGATGTATGTAAATGAATTAAATAATTTTCTTTAGTCATTGTCCAAGATCGAGACACCCAATTGCTTATAATTGTATTGCCCGAGAAGTTTATTTTGTTTCTTTTTTTCTTTTACGAGACTATATGAGAGGCATACTTCTTCCTTCGATGAAAGAGAGACAAAACATTTATGAAACCATGTGTGCTTAATTAATTGAAGTTTTTTTTAAAATAAATTTCTGAATTAGTCATATAAATTATTATTATATAGTATACTATTATCTTCACTAAATATGTAATTATATAATTGGAATTACTTAAAATCTTCAATATAATACATTTTAATTTTAAACAGTATCAAGAGTTTTTTCTAATATGGAGGTAATAAGTTGTACAAATGGTATGCATTTCCCAAAACCATTAATGTATATATTTTTTTAATATTTAAGACGATGGATGATCTTGTCGTTCAGTTTGAAGATTGTGATTAG

mRNA sequence

ATGGGGCTTCAGAGATTAGAACTTTGTTTGGAGCTGCTGCGAATGGCTATCAATTTCGTCGTGGTCGTTGCCGAATCCGTGGGCGACGTTATCCACCGGGAATGTCAACCGCAAGCTCTGCCGACGGCGGGCGGTAGGGTTCCGACGATGGATGATCTTGTCGTTCAGTTTGAAGATTGTGATTAG

Coding sequence (CDS)

ATGGGGCTTCAGAGATTAGAACTTTGTTTGGAGCTGCTGCGAATGGCTATCAATTTCGTCGTGGTCGTTGCCGAATCCGTGGGCGACGTTATCCACCGGGAATGTCAACCGCAAGCTCTGCCGACGGCGGGCGGTAGGGTTCCGACGATGGATGATCTTGTCGTTCAGTTTGAAGATTGTGATTAG

Protein sequence

MGLQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGGRVPTMDDLVVQFEDCD*
Homology
[Close]
BLAST of Chy1G000270 vs. ExPASy TrEMBL
Match: A0A5D3C626 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G00250 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 3.7e-17
Identity = 47/48 (97.92%), Postives = 48/48 (100.00%), Query Frame = 0 

Query: 1  MGLQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGGRVP 49
          MG+QRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGGRVP
Sbjct: 1  MGIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGGRVP 48

[Close]
BLAST of Chy1G000270 vs. ExPASy TrEMBL
Match: A0A0A0K3A1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G074910 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 3.7e-17
Identity = 47/48 (97.92%), Postives = 48/48 (100.00%), Query Frame = 0 

Query: 1  MGLQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGGRVP 49
          MG+QRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGGRVP
Sbjct: 1  MGIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGGRVP 48

[Close]
BLAST of Chy1G000270 vs. NCBI nr
Match: KAA0031272.1 (hypothetical protein E6C27_scaffold139G00250 [Cucumis melo var. makuwa] >KGN43958.1 hypothetical protein Csa_017301 [Cucumis sativus] >TYK06724.1 hypothetical protein E5676_scaffold13G00250 [Cucumis melo var. makuwa])

HSP 1 Score: 95.1 bits (235), Expect = 3.82e-24
Identity = 47/48 (97.92%), Postives = 48/48 (100.00%), Query Frame = 0 

Query: 1  MGLQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGGRVP 48
          MG+QRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGGRVP
Sbjct: 1  MGIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGGRVP 48

[Close]
BLAST of Chy1G000270 vs. NCBI nr
Match: XP_015874275.1 (uncharacterized protein LOC107411246 [Ziziphus jujuba])

HSP 1 Score: 49.7 bits (117), Expect = 3.79e-06
Identity = 24/48 (50.00%), Postives = 35/48 (72.92%), Query Frame = 0 

Query: 1  MGLQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGGRVP 48
          M +QR+E+C+ELL+MAI FV+VVAE+VG VIH+   P  + ++    P
Sbjct: 1  MVIQRIEMCVELLKMAIEFVIVVAEAVGIVIHQNMSPAFIRSSAYPTP 48

[Close]
BLAST of Chy1G000270 vs. NCBI nr
Match: KAG4209325.1 (hypothetical protein ERO13_A03G190700v2 [Gossypium hirsutum] >TYH26196.1 hypothetical protein ES288_A03G231700v1 [Gossypium darwinii] >TYI37631.1 hypothetical protein ES332_A03G226400v1 [Gossypium tomentosum] >TYJ44239.1 hypothetical protein E1A91_A03G209600v1 [Gossypium mustelinum])

HSP 1 Score: 48.9 bits (115), Expect = 7.99e-06
Identity = 28/54 (51.85%), Postives = 37/54 (68.52%), Query Frame = 0 

Query: 1  MGLQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGGRVPTMDDLV 54
          M LQRLE+C+EL+++A+ FVVVVAE+VG VIH+   P  + TA     T   LV
Sbjct: 1  MVLQRLEICVELMKLAVEFVVVVAEAVGIVIHQNHSPPVM-TASRSFATSVPLV 53

[Close]
BLAST of Chy1G000270 vs. NCBI nr
Match: KAG8497941.1 (hypothetical protein CXB51_006654 [Gossypium anomalum])

HSP 1 Score: 48.9 bits (115), Expect = 7.99e-06
Identity = 27/54 (50.00%), Postives = 38/54 (70.37%), Query Frame = 0 

Query: 1  MGLQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGGRVPTMDDLV 54
          M LQRLE+C+EL+++A++FVVVVAE+VG VIH+   P  + TA     T   L+
Sbjct: 1  MVLQRLEICVELMKLAVDFVVVVAEAVGIVIHQNHSPPVM-TASRSFATSVPLI 53

[Close]
BLAST of Chy1G000270 vs. NCBI nr
Match: MBA0799196.1 (hypothetical protein [Gossypium harknessii])

HSP 1 Score: 50.1 bits (118), Expect = 8.84e-06
Identity = 27/60 (45.00%), Postives = 40/60 (66.67%), Query Frame = 0 

Query: 1  MGLQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTA---GGRVPTMDDLVVQF 57
          M LQRLE+C+EL+++A+ FVVVVAE+VG VIH+   P  +  +      VP +   ++QF
Sbjct: 1  MVLQRLEICVELMKLAVEFVVVVAEAVGIVIHQNHSPPVMTASRPFATPVPLVGVRILQF 60

The following BLAST results are available for this feature:
BLAST of Chy1G000270 vs.
Match NameE-valueIdentityDescription
BLAST of Chy1G000270 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3C6263.7e-1797.92Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0K3A13.7e-1797.92Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G074910 PE=4 SV=1[more]
BLAST of Chy1G000270 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0031272.13.82e-2497.92hypothetical protein E6C27_scaffold139G00250 [Cucumis melo var. makuwa] >KGN4395... [more]
XP_015874275.13.79e-0650.00uncharacterized protein LOC107411246 [Ziziphus jujuba][more]
KAG4209325.17.99e-0651.85hypothetical protein ERO13_A03G190700v2 [Gossypium hirsutum] >TYH26196.1 hypothe... [more]
KAG8497941.17.99e-0650.00hypothetical protein CXB51_006654 [Gossypium anomalum][more]
MBA0799196.18.84e-0645.00hypothetical protein [Gossypium harknessii][more]
BLAST of Chy1G000270 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37705BNAA08G11710D PROTEINcoord: 1..48
NoneNo IPR availablePANTHERPTHR37705:SF1BNAA08G11710D PROTEINcoord: 1..48

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy1G000270.1Chy1G000270.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane