Chy1G000020 (gene) Cucumber (hystrix) v1

Overview


Name	Chy1G000020
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	transcription termination factor MTEF1, chloroplastic
Location	chrH01: 23689 .. 24537 (-)
RNA-Seq Expression	Chy1G000020
Synteny	Chy1G000020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGTCGGAGCTCCAGTTCTCTCCCACTCATTCCCCGCCGTCTCTTCTTTCTCTCACTTCACCACTCCCACTCCGACTACCAGATCTCGCCATCCTCATCTTCATCCTCCATCCATCAACTTCCGCACTTCACATCACCAAAACATCCGTTACCTCAAATCCCTGAACATCATCGAACCCCAAACCAGGTTTCAATCTCCCGACGCCGTCGACCAAATCCTTACCACCGTCCATTTCCTCAAATCCAAGGGCTTCTCCGACTCCGATTTCCCCAGACTCGCCTTCCTCTGCCCTAACCTCTTCACTTCCAACTTCGATACCACCGACATTGCCCCCGTTTTCCACTTCCTCGCCACTGATATATCCGCTTCCCTTCAAGAATCGCGCGGATTGATCCTCCGGTGCCCTAAGATTCTCTTCTCTGACGTCGAATTGTGTCTCAAGCCGACGCATAGATTTTTGAAGCAGTTAGGGATCGAGAATCTGAAATCGCCGAGTAATTTGAATTCGCATCTTCTGAACACTCGGGTGGAAAAGCTAAGAAGCAAAATCAGATTCTTACAGGAGATCGGATTCTCACACGAGGAGGCGTCAAAGGTTTGTGGGAGAATGCCGGCGATGTTCGGGTACAGTGTGAAGGAGAATTTGAGGCCTAAGTACGAGTATTTCGTGAAGGAGATGGAGAGGGATTTGGAGGAATTGAAAGGGTTCCCTCAGTATTTCGGGTTTAGTTTGGAAGGAAGAATTATGCCTAGACATTTGCATTTGAAACAAAGGGGCCTTCATATTCCTCTCAATAGTATGTTGTTGTGGAGTCACAATAGGTTTTACTCTAAATGGAAATGA

mRNA sequence

ATGGCGGTCGGAGCTCCAGTTCTCTCCCACTCATTCCCCGCCGTCTCTTCTTTCTCTCACTTCACCACTCCCACTCCGACTACCAGATCTCGCCATCCTCATCTTCATCCTCCATCCATCAACTTCCGCACTTCACATCACCAAAACATCCGTTACCTCAAATCCCTGAACATCATCGAACCCCAAACCAGGTTTCAATCTCCCGACGCCGTCGACCAAATCCTTACCACCGTCCATTTCCTCAAATCCAAGGGCTTCTCCGACTCCGATTTCCCCAGACTCGCCTTCCTCTGCCCTAACCTCTTCACTTCCAACTTCGATACCACCGACATTGCCCCCGTTTTCCACTTCCTCGCCACTGATATATCCGCTTCCCTTCAAGAATCGCGCGGATTGATCCTCCGGTGCCCTAAGATTCTCTTCTCTGACGTCGAATTGTGTCTCAAGCCGACGCATAGATTTTTGAAGCAGTTAGGGATCGAGAATCTGAAATCGCCGAGTAATTTGAATTCGCATCTTCTGAACACTCGGGTGGAAAAGCTAAGAAGCAAAATCAGATTCTTACAGGAGATCGGATTCTCACACGAGGAGGCGTCAAAGGTTTGTGGGAGAATGCCGGCGATGTTCGGGTACAGTGTGAAGGAGAATTTGAGGCCTAAGTACGAGTATTTCGTGAAGGAGATGGAGAGGGATTTGGAGGAATTGAAAGGGTTCCCTCAGTATTTCGGGTTTAGTTTGGAAGGAAGAATTATGCCTAGACATTTGCATTTGAAACAAAGGGGCCTTCATATTCCTCTCAATAGTATGTTGTTGTGGAGTCACAATAGGTTTTACTCTAAATGGAAATGA

Coding sequence (CDS)

ATGGCGGTCGGAGCTCCAGTTCTCTCCCACTCATTCCCCGCCGTCTCTTCTTTCTCTCACTTCACCACTCCCACTCCGACTACCAGATCTCGCCATCCTCATCTTCATCCTCCATCCATCAACTTCCGCACTTCACATCACCAAAACATCCGTTACCTCAAATCCCTGAACATCATCGAACCCCAAACCAGGTTTCAATCTCCCGACGCCGTCGACCAAATCCTTACCACCGTCCATTTCCTCAAATCCAAGGGCTTCTCCGACTCCGATTTCCCCAGACTCGCCTTCCTCTGCCCTAACCTCTTCACTTCCAACTTCGATACCACCGACATTGCCCCCGTTTTCCACTTCCTCGCCACTGATATATCCGCTTCCCTTCAAGAATCGCGCGGATTGATCCTCCGGTGCCCTAAGATTCTCTTCTCTGACGTCGAATTGTGTCTCAAGCCGACGCATAGATTTTTGAAGCAGTTAGGGATCGAGAATCTGAAATCGCCGAGTAATTTGAATTCGCATCTTCTGAACACTCGGGTGGAAAAGCTAAGAAGCAAAATCAGATTCTTACAGGAGATCGGATTCTCACACGAGGAGGCGTCAAAGGTTTGTGGGAGAATGCCGGCGATGTTCGGGTACAGTGTGAAGGAGAATTTGAGGCCTAAGTACGAGTATTTCGTGAAGGAGATGGAGAGGGATTTGGAGGAATTGAAAGGGTTCCCTCAGTATTTCGGGTTTAGTTTGGAAGGAAGAATTATGCCTAGACATTTGCATTTGAAACAAAGGGGCCTTCATATTCCTCTCAATAGTATGTTGTTGTGGAGTCACAATAGGTTTTACTCTAAATGGAAATGA

Protein sequence

MAVGAPVLSHSFPAVSSFSHFTTPTPTTRSRHPHLHPPSINFRTSHHQNIRYLKSLNIIEPQTRFQSPDAVDQILTTVHFLKSKGFSDSDFPRLAFLCPNLFTSNFDTTDIAPVFHFLATDISASLQESRGLILRCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVEKLRSKIRFLQEIGFSHEEASKVCGRMPAMFGYSVKENLRPKYEYFVKEMERDLEELKGFPQYFGFSLEGRIMPRHLHLKQRGLHIPLNSMLLWSHNRFYSKWK*

Homology

[Close]

BLAST of Chy1G000020 vs. ExPASy Swiss-Prot
Match: Q84X53 (Transcription termination factor MTEF1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF1 PE=2 SV=2)

HSP 1 Score: 151.8 bits (382), Expect = 1.2e-35
Identity = 92/236 (38.98%), Postives = 139/236 (58.90%), Query Frame = 0


Query: 48  QNIRYLKSLNIIEPQTRFQSPD----AVDQILTTVHFLKSKGFSDSDFPRLAFLCPNLFT 107
           + + YL+ LN+   +    +P      +  +++    L S G S     R+  + P+L T
Sbjct: 35  EKLIYLQDLNVDPHKALRVNPSLRSAPISSVVSVETLLSSTGLSRPAVGRILDMFPDLLT 94

Query: 108 SNFDTTDIAPVFHFLATDISASLQESRGLILRCPKILFSDVELCLKPTHRFLKQLGIENL 167
           S+   ++I PV  FL+ +IS S Q+    I RCP++L S V+  L+P   FLK LG    
Sbjct: 95  SD-PESEILPVLRFLSNEISISEQDIPKSISRCPRLLISSVDYQLRPALTFLKTLGFVGR 154

Query: 168 KSPSNLNSHLLNTRVEK-LRSKIRFLQE-IGFSHEEASKVCGRMPAMFGYSVKENLRPKY 227
            + ++ N+ LL + VE+ L  KI +L+E +GF+ EE +K+  R PA+  YSV  NL PK 
Sbjct: 155 DTITSRNTVLLVSNVERTLIPKIEYLEEGLGFTREEVAKMVVRSPALLTYSVDNNLVPKV 214

Query: 228 EYFVKEMERDLEELKGFPQYFGFSLEGRIMPRHLHLKQRGLHIPLNSMLLWSHNRF 278
           E+F++EM  D++ELK FPQYF FSLE +I PRH  LK+ G+ +PL+ ML  S  +F
Sbjct: 215 EFFIEEMRGDVKELKRFPQYFSFSLERKIKPRHRLLKEHGILMPLSEMLKVSDGQF 269

[Close]

BLAST of Chy1G000020 vs. ExPASy Swiss-Prot
Match: F4JVI3 (Transcription termination factor MTERF5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF5 PE=1 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.3e-15
Identity = 59/207 (28.50%), Postives = 102/207 (49.28%), Query Frame = 0


Query: 72  DQILTTVHFLKSKGFSDSDFPRLAFLCPNLFTSNFDTTDIAPVFHFLATDISASLQESRG 131
           D +  T+ FL++ G   + + ++    P + T  +    +     FL+   +   +E  G
Sbjct: 266 DNLKPTMAFLETLGIDKNQWAKIISRFPAILT--YSRQKLTSTVEFLSQ--TGLTEEQIG 325

Query: 132 LIL-RCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVEKLRSKIRFLQE 191
            IL RCP I+   VE  L+PT  + + L ++              +    L+    F  E
Sbjct: 326 RILTRCPNIMSYSVEDKLRPTMEYFRSLNVDVAVLLHRCPQTFGLSIESNLKPVTEFFLE 385

Query: 192 IGFSHEEASKVCGRMPAMFGYSVKENLRPKYEYFVKEMERDLEELKGFPQYFGFSLEGRI 251
            GF  +E   +  R  A++ +S+KEN+ PK++YF + M+    EL  FPQ+FG+SL+ RI
Sbjct: 386 KGFGLDEIGIMISRYGALYTFSLKENVMPKWDYF-QTMDYPKSELVKFPQFFGYSLQERI 445

Query: 252 MPRHLHLKQRGLHIPLNSMLLWSHNRF 278
            PR+  +++ G+ + LN +L  S   F
Sbjct: 446 KPRYELVQRSGVRLLLNQVLSLSGIEF 467

[Close]

BLAST of Chy1G000020 vs. ExPASy Swiss-Prot
Match: Q9FM80 (Transcription termination factor MTERF9, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF9 PE=2 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.1e-12
Identity = 63/263 (23.95%), Postives = 117/263 (44.49%), Query Frame = 0


Query: 36  HPPSINFRT-SHHQNIRYLKSLNI--------IEPQTRFQSPDAVDQILTTVHFLKSKGF 95
           H PS+     S  + + YL S+ +        +  Q +       + +   + FL   G 
Sbjct: 208 HMPSLQINVFSAQERLDYLLSVGVKHRDIKRMLLRQPQILQYTVENNLKAHISFLMGLGI 267

Query: 96  SDSDFPRLAFLCPNLFTSNFDTTDIAPVFHFLATDISASLQESRGLILRCPKILFSDVEL 155
            +S   ++    P+LF+ + + + + P   +L  ++     +   ++   P+IL   +++
Sbjct: 268 PNSKIGQIVAATPSLFSYSVENS-LRPTIRYLIEEVGIKETDVGKVVQLSPQILVQRLDI 327

Query: 156 CLKPTHRFL-KQLGIENLKSPSNLNSH--LLNTRVEK-LRSKIRFLQEIGFSHEEASKVC 215
                + FL K+LG         +  H  LL+  ++     +I FL+ IG  + +  KV 
Sbjct: 328 TWNTRYMFLSKELGAPRDSVVKMVKKHPQLLHYSIDDGFLPRINFLRSIGMCNSDILKVL 387

Query: 216 GRMPAMFGYSVKENLRPKYEYFVKEMERDLEELKGFPQYFGFSLEGRIMPRHLHL----K 275
             +  +   S+++NL+PKY Y V E+  ++  L  +P Y   SL+ RI PRH  L    K
Sbjct: 388 TSLTQVLSLSLEDNLKPKYMYLVNELNNEVHILTKYPMYLSLSLDQRIRPRHRFLVELKK 447

Query: 276 QRGLHIPLNSMLLWSHNRFYSKW 282
            R    PL+S L+ +   F  +W
Sbjct: 448 VRKGPFPLSS-LVPNDESFCQQW 468

[Close]

BLAST of Chy1G000020 vs. ExPASy Swiss-Prot
Match: F4IHL3 (Transcription termination factor MTERF2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF2 PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 5.4e-12
Identity = 65/242 (26.86%), Postives = 105/242 (43.39%), Query Frame = 0


Query: 78  VHFLKSKGFSDSDFPRLAFLCPNLFTSNFDT--TDIAPVFHFLATDISASLQESRGLILR 137
           +++LK  G S  +  RL    P+L   + +     +   F++L        +E    IL 
Sbjct: 356 INYLKEFGLSTEEVGRLLAYKPHLMGCSIEERWKPLVKYFYYLGIP-----KEGMKRILV 415

Query: 138 CPKILFS-DVELCLKPTHRFLKQLGIENLKSPSNL---NSHLLNTRVEKLRSKIRF-LQE 197
              IL+  D+E  + P  RFL+++GI N    + L    S L N+  +K+R  + F L  
Sbjct: 416 VKPILYCIDLEKTIAPKVRFLQEMGIPNEAIGNMLVKFPSLLTNSLYKKIRPVVIFLLTR 475

Query: 198 IGFSHEEASKVCGRMPAMFGYSV-----------------------------------KE 257
            G + ++  KV    PA+ G S+                                    +
Sbjct: 476 AGVTQKDIGKVIAMDPALLGCSIGTKLEPNMRYYISLGIRFYQLGEMIADFPMLLRYNVD 535

Query: 258 NLRPKYEYFVKEMERDLEELKGFPQYFGFSLEGRIMPRHLHLKQRGLHIPLNSMLLWSHN 278
           NLRPKY Y  + M R L++L  FP++F +SLE RI+PRH  + +  ++  L  ML  +  
Sbjct: 536 NLRPKYRYLRRTMIRPLQDLIEFPRFFSYSLERRIIPRHTIMVENRVNFKLRYMLACTDE 592

[Close]

BLAST of Chy1G000020 vs. ExPASy Swiss-Prot
Match: Q9SZL6 (Transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MTERF6 PE=2 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.1e-09
Identity = 51/217 (23.50%), Postives = 104/217 (47.93%), Query Frame = 0


Query: 72  DQILTTVHFLKSKGFSDSDFPRLAFLCPNLFTSNFDTTDIAPVFHFLATDISASLQES-- 131
           +++   + F ++ G  ++   ++    P L + + D T +  +  FLA   S  L +   
Sbjct: 112 EKLCPLLAFFQALGVPETQLGKMILFNPRLISYSID-TKLTVIVSFLA---SLGLDQDGM 171

Query: 132 -RGLILRCPKILFSDVELCLKPTHRFLKQ---LGIENLKSPSNLNSHLLNTRVEK-LRSK 191
              ++++ P ++   V+  L+PT  FLK    L  + +KS       LL   V K L+  
Sbjct: 172 IGKVLVKNPFLMGYSVDKRLRPTTEFLKSSVGLSEDGIKSVVMNFPQLLCRDVNKILKPN 231

Query: 192 IRFLQEIGFSHEEASKVCGRMPAMFGYSVKENLRPKYEYFVKEMERDLEELKGFPQYFGF 251
             +L+E GF   + + +    P +   SVK +L+P+  + V+ M R ++E+  +P++F  
Sbjct: 232 YDYLKECGFGDSQIATMVTGYPQILIKSVKNSLQPRIRFLVQVMGRGMDEVASYPEFFHH 291

Query: 252 SLEGRIMPRHLHLKQRGLHIPLNSMLLWSHNRFYSKW 282
            L+ ++  R   +K+  +   L  ML  +  +F+ K+
Sbjct: 292 GLKKKVESRFKLVKKNNIDCSLREMLDCNTKKFHEKF 324

[Close]

BLAST of Chy1G000020 vs. ExPASy TrEMBL
Match: A0A0A0K870 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G075660 PE=3 SV=1)

HSP 1 Score: 554.3 bits (1427), Expect = 3.0e-154
Identity = 271/282 (96.10%), Postives = 275/282 (97.52%), Query Frame = 0


Query: 1   MAVGAPVLSHSFPAVSSFSHFTTPTPTTRSRHPHLHPPSINFRTSHHQNIRYLKSLNIIE 60
           MAVG PVLSHSF A+ SFSHFTTPTPTTRSRHPHLHPPSINFRTSHHQNIRYLKSLN+I+
Sbjct: 1   MAVGPPVLSHSFLALYSFSHFTTPTPTTRSRHPHLHPPSINFRTSHHQNIRYLKSLNVID 60

Query: 61  PQTRFQSPDAVDQILTTVHFLKSKGFSDSDFPRLAFLCPNLFTSNFDTTDIAPVFHFLAT 120
           PQTRF SPDAV QILTTVHFLKSKGFSDSDFPRLAFLCPNLFTSNFDTTDIAPVF FLAT
Sbjct: 61  PQTRFHSPDAVHQILTTVHFLKSKGFSDSDFPRLAFLCPNLFTSNFDTTDIAPVFQFLAT 120

Query: 121 DISASLQESRGLILRCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVEK 180
           DISASLQESRGLILRCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVEK
Sbjct: 121 DISASLQESRGLILRCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVEK 180

Query: 181 LRSKIRFLQEIGFSHEEASKVCGRMPAMFGYSVKENLRPKYEYFVKEMERDLEELKGFPQ 240
           LRSKIRF QEIGFSHEEASKVCGRMPAMFGYSVKENL+PKYEYFVKEMERDLEELKGFPQ
Sbjct: 181 LRSKIRFFQEIGFSHEEASKVCGRMPAMFGYSVKENLKPKYEYFVKEMERDLEELKGFPQ 240

Query: 241 YFGFSLEGRIMPRHLHLKQRGLHIPLNSMLLWSHNRFYSKWK 283
           YFGFSLEGRIMPRHLHLKQRGLHIPLNSMLLWSHNRFYSKWK
Sbjct: 241 YFGFSLEGRIMPRHLHLKQRGLHIPLNSMLLWSHNRFYSKWK 282

[Close]

BLAST of Chy1G000020 vs. ExPASy TrEMBL
Match: A0A5D3C479 (Transcription termination factor MTEF1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G00020 PE=3 SV=1)

HSP 1 Score: 552.7 bits (1423), Expect = 8.6e-154
Identity = 269/282 (95.39%), Postives = 276/282 (97.87%), Query Frame = 0


Query: 1   MAVGAPVLSHSFPAVSSFSHFTTPTPTTRSRHPHLHPPSINFRTSHHQNIRYLKSLNIIE 60
           MAVGAPVLSHSFP VSSFSHFTTPTPTTRSRHPHLHPPSINFRTSH QN+RYLKSLNII+
Sbjct: 1   MAVGAPVLSHSFPIVSSFSHFTTPTPTTRSRHPHLHPPSINFRTSHQQNLRYLKSLNIID 60

Query: 61  PQTRFQSPDAVDQILTTVHFLKSKGFSDSDFPRLAFLCPNLFTSNFDTTDIAPVFHFLAT 120
           PQTRF+SPDAVDQILTTVHFLKSKGFSDSDFPRLAF CPNLFTSNFDTTDIAPVFHFLA 
Sbjct: 61  PQTRFRSPDAVDQILTTVHFLKSKGFSDSDFPRLAFFCPNLFTSNFDTTDIAPVFHFLAA 120

Query: 121 DISASLQESRGLILRCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVEK 180
           DISAS+QESRGLILRCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVEK
Sbjct: 121 DISASIQESRGLILRCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVEK 180

Query: 181 LRSKIRFLQEIGFSHEEASKVCGRMPAMFGYSVKENLRPKYEYFVKEMERDLEELKGFPQ 240
           LR+KIRFLQEIGFS+EEASKVCGRMPA+FGYSVKENLRPKYEY VK MERDLEELKGFPQ
Sbjct: 181 LRNKIRFLQEIGFSYEEASKVCGRMPAIFGYSVKENLRPKYEYLVKVMERDLEELKGFPQ 240

Query: 241 YFGFSLEGRIMPRHLHLKQRGLHIPLNSMLLWSHNRFYSKWK 283
           YFGFSLEGRIMPRHLHLKQRGLHIPLNSMLLWSHNRFYSKWK
Sbjct: 241 YFGFSLEGRIMPRHLHLKQRGLHIPLNSMLLWSHNRFYSKWK 282

[Close]

BLAST of Chy1G000020 vs. ExPASy TrEMBL
Match: A0A1S3BZK0 (transcription termination factor MTEF1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495186 PE=3 SV=1)

HSP 1 Score: 552.7 bits (1423), Expect = 8.6e-154
Identity = 269/282 (95.39%), Postives = 276/282 (97.87%), Query Frame = 0


Query: 1   MAVGAPVLSHSFPAVSSFSHFTTPTPTTRSRHPHLHPPSINFRTSHHQNIRYLKSLNIIE 60
           MAVGAPVLSHSFP VSSFSHFTTPTPTTRSRHPHLHPPSINFRTSH QN+RYLKSLNII+
Sbjct: 1   MAVGAPVLSHSFPIVSSFSHFTTPTPTTRSRHPHLHPPSINFRTSHQQNLRYLKSLNIID 60

Query: 61  PQTRFQSPDAVDQILTTVHFLKSKGFSDSDFPRLAFLCPNLFTSNFDTTDIAPVFHFLAT 120
           PQTRF+SPDAVDQILTTVHFLKSKGFSDSDFPRLAF CPNLFTSNFDTTDIAPVFHFLA 
Sbjct: 61  PQTRFRSPDAVDQILTTVHFLKSKGFSDSDFPRLAFFCPNLFTSNFDTTDIAPVFHFLAA 120

Query: 121 DISASLQESRGLILRCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVEK 180
           DISAS+QESRGLILRCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVEK
Sbjct: 121 DISASIQESRGLILRCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVEK 180

Query: 181 LRSKIRFLQEIGFSHEEASKVCGRMPAMFGYSVKENLRPKYEYFVKEMERDLEELKGFPQ 240
           LR+KIRFLQEIGFS+EEASKVCGRMPA+FGYSVKENLRPKYEY VK MERDLEELKGFPQ
Sbjct: 181 LRNKIRFLQEIGFSYEEASKVCGRMPAIFGYSVKENLRPKYEYLVKVMERDLEELKGFPQ 240

Query: 241 YFGFSLEGRIMPRHLHLKQRGLHIPLNSMLLWSHNRFYSKWK 283
           YFGFSLEGRIMPRHLHLKQRGLHIPLNSMLLWSHNRFYSKWK
Sbjct: 241 YFGFSLEGRIMPRHLHLKQRGLHIPLNSMLLWSHNRFYSKWK 282

[Close]

BLAST of Chy1G000020 vs. ExPASy TrEMBL
Match: A0A6J1JEA2 (transcription termination factor MTEF1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111486102 PE=3 SV=1)

HSP 1 Score: 413.7 bits (1062), Expect = 6.2e-112
Identity = 206/283 (72.79%), Postives = 232/283 (81.98%), Query Frame = 0


Query: 1   MAVGAPVLSHSFPAVSSFSHFTTPTPTTRSRHPHLHPPSINFRTSHHQNIRYLKSLNIIE 60
           MAVGA  LSH F  +SS SH  +PT       P   PP +NFRT+H  N+RYLKSL +++
Sbjct: 1   MAVGA--LSHPFTTISSLSHSNSPTSRPPPSPPPSPPPFLNFRTAHSHNLRYLKSLRLLD 60

Query: 61  P-QTRFQSPDAVDQILTTVHFLKSKGFSDSDFPRLAFLCPNLFTSNFDTTDIAPVFHFLA 120
              T+F+SPDAV  IL TVHFLKSKGFSDSDFP LAFLCP LF+ +FD TDIAPVF FLA
Sbjct: 61  SHSTKFRSPDAVHSILATVHFLKSKGFSDSDFPTLAFLCPQLFSPDFDPTDIAPVFDFLA 120

Query: 121 TDISASLQESRGLILRCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVE 180
            D+SAS+QESRG+ILRCPK+LFSDVELCL+PT RFLKQ+G+ENL +PSNL SHLLNTRVE
Sbjct: 121 ADLSASIQESRGMILRCPKLLFSDVELCLRPTLRFLKQIGLENLNTPSNLKSHLLNTRVE 180

Query: 181 KLRSKIRFLQEIGFSHEEASKVCGRMPAMFGYSVKENLRPKYEYFVKEMERDLEELKGFP 240
           KLR K RFLQE+GFSHEEA+KVC RMPA+FGYSV+ENLRPKYEY V EMERDLEELK FP
Sbjct: 181 KLRGKFRFLQELGFSHEEAAKVCRRMPALFGYSVEENLRPKYEYLVNEMERDLEELKEFP 240

Query: 241 QYFGFSLEGRIMPRHLHLKQRGLHIPLNSMLLWSHNRFYSKWK 283
           QYF FSLE RI PRHLHLKQR L IPLN MLLWS  +FY+KWK
Sbjct: 241 QYFAFSLERRIAPRHLHLKQRNLRIPLNRMLLWSDQKFYTKWK 281

[Close]

BLAST of Chy1G000020 vs. ExPASy TrEMBL
Match: A0A6J1EZY9 (transcription termination factor MTEF1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111437777 PE=3 SV=1)

HSP 1 Score: 404.4 bits (1038), Expect = 3.8e-109
Identity = 204/283 (72.08%), Postives = 234/283 (82.69%), Query Frame = 0


Query: 1   MAVGAPVLSHSFPAVSSFSHFTTPTPTTRSRHPHLHPPSINFRTSHHQNIRYLKSLNIIE 60
           MAVGA  LS  F  +SS SH  TPT    SR P   PP +NFRT+H+ N+RYLKSL++++
Sbjct: 1   MAVGA--LSRPFTTISSLSHSNTPT----SRPP---PPFLNFRTAHYHNLRYLKSLHLLD 60

Query: 61  PQ-TRFQSPDAVDQILTTVHFLKSKGFSDSDFPRLAFLCPNLFTSNFDTTDIAPVFHFLA 120
            + T+F+SPDAV  IL TVHFLKSKGFSDSDFP LA LCP LF+ +FD TDIAPVF FLA
Sbjct: 61  SRSTKFRSPDAVHSILATVHFLKSKGFSDSDFPSLAILCPQLFSPDFDPTDIAPVFDFLA 120

Query: 121 TDISASLQESRGLILRCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVE 180
            D+SAS+QESRG+ILRCP++LFSDVELCL+PT RFLKQ+GIENL +PSNL SHLLNTRVE
Sbjct: 121 ADLSASIQESRGMILRCPRLLFSDVELCLRPTLRFLKQIGIENLNTPSNLKSHLLNTRVE 180

Query: 181 KLRSKIRFLQEIGFSHEEASKVCGRMPAMFGYSVKENLRPKYEYFVKEMERDLEELKGFP 240
           KLR K RFLQE+GFSHEEA+KVC RMPA+FGYSV+ENLRPKYEY V EMERD+EELK FP
Sbjct: 181 KLRGKFRFLQELGFSHEEAAKVCRRMPAIFGYSVEENLRPKYEYLVNEMERDVEELKEFP 240

Query: 241 QYFGFSLEGRIMPRHLHLKQRGLHIPLNSMLLWSHNRFYSKWK 283
            YF FSLE RI PRHLHLKQR L IPL+ MLLWS  +FY+KWK
Sbjct: 241 HYFAFSLERRIAPRHLHLKQRNLRIPLHRMLLWSDQKFYTKWK 274

[Close]

BLAST of Chy1G000020 vs. NCBI nr
Match: XP_011658929.1 (transcription termination factor MTEF1, chloroplastic [Cucumis sativus] >KGN43986.1 hypothetical protein Csa_017691 [Cucumis sativus])

HSP 1 Score: 556 bits (1432), Expect = 1.90e-199
Identity = 271/282 (96.10%), Postives = 275/282 (97.52%), Query Frame = 0


Query: 1   MAVGAPVLSHSFPAVSSFSHFTTPTPTTRSRHPHLHPPSINFRTSHHQNIRYLKSLNIIE 60
           MAVG PVLSHSF A+ SFSHFTTPTPTTRSRHPHLHPPSINFRTSHHQNIRYLKSLN+I+
Sbjct: 1   MAVGPPVLSHSFLALYSFSHFTTPTPTTRSRHPHLHPPSINFRTSHHQNIRYLKSLNVID 60

Query: 61  PQTRFQSPDAVDQILTTVHFLKSKGFSDSDFPRLAFLCPNLFTSNFDTTDIAPVFHFLAT 120
           PQTRF SPDAV QILTTVHFLKSKGFSDSDFPRLAFLCPNLFTSNFDTTDIAPVF FLAT
Sbjct: 61  PQTRFHSPDAVHQILTTVHFLKSKGFSDSDFPRLAFLCPNLFTSNFDTTDIAPVFQFLAT 120

Query: 121 DISASLQESRGLILRCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVEK 180
           DISASLQESRGLILRCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVEK
Sbjct: 121 DISASLQESRGLILRCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVEK 180

Query: 181 LRSKIRFLQEIGFSHEEASKVCGRMPAMFGYSVKENLRPKYEYFVKEMERDLEELKGFPQ 240
           LRSKIRF QEIGFSHEEASKVCGRMPAMFGYSVKENL+PKYEYFVKEMERDLEELKGFPQ
Sbjct: 181 LRSKIRFFQEIGFSHEEASKVCGRMPAMFGYSVKENLKPKYEYFVKEMERDLEELKGFPQ 240

Query: 241 YFGFSLEGRIMPRHLHLKQRGLHIPLNSMLLWSHNRFYSKWK 282
           YFGFSLEGRIMPRHLHLKQRGLHIPLNSMLLWSHNRFYSKWK
Sbjct: 241 YFGFSLEGRIMPRHLHLKQRGLHIPLNSMLLWSHNRFYSKWK 282

[Close]

BLAST of Chy1G000020 vs. NCBI nr
Match: XP_008454873.1 (PREDICTED: transcription termination factor MTEF1, chloroplastic [Cucumis melo] >KAA0031250.1 transcription termination factor MTEF1 [Cucumis melo var. makuwa] >TYK06701.1 transcription termination factor MTEF1 [Cucumis melo var. makuwa])

HSP 1 Score: 554 bits (1428), Expect = 7.73e-199
Identity = 269/282 (95.39%), Postives = 276/282 (97.87%), Query Frame = 0


Query: 1   MAVGAPVLSHSFPAVSSFSHFTTPTPTTRSRHPHLHPPSINFRTSHHQNIRYLKSLNIIE 60
           MAVGAPVLSHSFP VSSFSHFTTPTPTTRSRHPHLHPPSINFRTSH QN+RYLKSLNII+
Sbjct: 1   MAVGAPVLSHSFPIVSSFSHFTTPTPTTRSRHPHLHPPSINFRTSHQQNLRYLKSLNIID 60

Query: 61  PQTRFQSPDAVDQILTTVHFLKSKGFSDSDFPRLAFLCPNLFTSNFDTTDIAPVFHFLAT 120
           PQTRF+SPDAVDQILTTVHFLKSKGFSDSDFPRLAF CPNLFTSNFDTTDIAPVFHFLA 
Sbjct: 61  PQTRFRSPDAVDQILTTVHFLKSKGFSDSDFPRLAFFCPNLFTSNFDTTDIAPVFHFLAA 120

Query: 121 DISASLQESRGLILRCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVEK 180
           DISAS+QESRGLILRCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVEK
Sbjct: 121 DISASIQESRGLILRCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVEK 180

Query: 181 LRSKIRFLQEIGFSHEEASKVCGRMPAMFGYSVKENLRPKYEYFVKEMERDLEELKGFPQ 240
           LR+KIRFLQEIGFS+EEASKVCGRMPA+FGYSVKENLRPKYEY VK MERDLEELKGFPQ
Sbjct: 181 LRNKIRFLQEIGFSYEEASKVCGRMPAIFGYSVKENLRPKYEYLVKVMERDLEELKGFPQ 240

Query: 241 YFGFSLEGRIMPRHLHLKQRGLHIPLNSMLLWSHNRFYSKWK 282
           YFGFSLEGRIMPRHLHLKQRGLHIPLNSMLLWSHNRFYSKWK
Sbjct: 241 YFGFSLEGRIMPRHLHLKQRGLHIPLNSMLLWSHNRFYSKWK 282

[Close]

BLAST of Chy1G000020 vs. NCBI nr
Match: XP_038887809.1 (transcription termination factor MTEF1, chloroplastic [Benincasa hispida])

HSP 1 Score: 476 bits (1226), Expect = 4.54e-168
Identity = 239/282 (84.75%), Postives = 253/282 (89.72%), Query Frame = 0


Query: 1   MAVGAPVLSHSFPAVSSFSHFTTPTPTTRSRHPHLHPPSINFRTSHHQNIRYLKSLNIIE 60
           MAVGA   +  F  VSSFSHF TP  TTRSR  HL PP INFRT H QN+RYLKSL+II+
Sbjct: 6   MAVGA---AAPFTTVSSFSHFKTP--TTRSRL-HLPPPFINFRTPHQQNLRYLKSLHIID 65

Query: 61  PQTRFQSPDAVDQILTTVHFLKSKGFSDSDFPRLAFLCPNLFTSNFDTTDIAPVFHFLAT 120
            QTRF SPDA+DQILTTVHFLKSKGFSDSDFPRLAFLCP LFT NFD TDIAPVFHFLA 
Sbjct: 66  SQTRFHSPDAIDQILTTVHFLKSKGFSDSDFPRLAFLCPQLFTPNFDPTDIAPVFHFLAA 125

Query: 121 DISASLQESRGLILRCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVEK 180
           D+SAS+QESRGLILRCP+IL SDVELCLKPTH+FLKQLGIENLKSPSNLNSHLLNTRVEK
Sbjct: 126 DLSASVQESRGLILRCPRILLSDVELCLKPTHKFLKQLGIENLKSPSNLNSHLLNTRVEK 185

Query: 181 LRSKIRFLQEIGFSHEEASKVCGRMPAMFGYSVKENLRPKYEYFVKEMERDLEELKGFPQ 240
           LRSKIRF+QEIGFSHEEA+K+CGRMPAMFGYSV+ENL+PKYEY VKEMERDLEELKGFPQ
Sbjct: 186 LRSKIRFMQEIGFSHEEAAKICGRMPAMFGYSVEENLKPKYEYLVKEMERDLEELKGFPQ 245

Query: 241 YFGFSLEGRIMPRHLHLKQRGLHIPLNSMLLWSHNRFYSKWK 282
           YFGFSLE RIMPRHLHLKQR L IPLN MLLWS NRFYSKWK
Sbjct: 246 YFGFSLEARIMPRHLHLKQRNLRIPLNRMLLWSDNRFYSKWK 281

[Close]

BLAST of Chy1G000020 vs. NCBI nr
Match: XP_022988882.1 (transcription termination factor MTEF1, chloroplastic [Cucurbita maxima])

HSP 1 Score: 415 bits (1067), Expect = 7.40e-144
Identity = 206/283 (72.79%), Postives = 232/283 (81.98%), Query Frame = 0


Query: 1   MAVGAPVLSHSFPAVSSFSHFTTPTPTTRSRHPHLHPPSINFRTSHHQNIRYLKSLNIIE 60
           MAVGA  LSH F  +SS SH  +PT       P   PP +NFRT+H  N+RYLKSL +++
Sbjct: 1   MAVGA--LSHPFTTISSLSHSNSPTSRPPPSPPPSPPPFLNFRTAHSHNLRYLKSLRLLD 60

Query: 61  PQ-TRFQSPDAVDQILTTVHFLKSKGFSDSDFPRLAFLCPNLFTSNFDTTDIAPVFHFLA 120
              T+F+SPDAV  IL TVHFLKSKGFSDSDFP LAFLCP LF+ +FD TDIAPVF FLA
Sbjct: 61  SHSTKFRSPDAVHSILATVHFLKSKGFSDSDFPTLAFLCPQLFSPDFDPTDIAPVFDFLA 120

Query: 121 TDISASLQESRGLILRCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVE 180
            D+SAS+QESRG+ILRCPK+LFSDVELCL+PT RFLKQ+G+ENL +PSNL SHLLNTRVE
Sbjct: 121 ADLSASIQESRGMILRCPKLLFSDVELCLRPTLRFLKQIGLENLNTPSNLKSHLLNTRVE 180

Query: 181 KLRSKIRFLQEIGFSHEEASKVCGRMPAMFGYSVKENLRPKYEYFVKEMERDLEELKGFP 240
           KLR K RFLQE+GFSHEEA+KVC RMPA+FGYSV+ENLRPKYEY V EMERDLEELK FP
Sbjct: 181 KLRGKFRFLQELGFSHEEAAKVCRRMPALFGYSVEENLRPKYEYLVNEMERDLEELKEFP 240

Query: 241 QYFGFSLEGRIMPRHLHLKQRGLHIPLNSMLLWSHNRFYSKWK 282
           QYF FSLE RI PRHLHLKQR L IPLN MLLWS  +FY+KWK
Sbjct: 241 QYFAFSLERRIAPRHLHLKQRNLRIPLNRMLLWSDQKFYTKWK 281

[Close]

BLAST of Chy1G000020 vs. NCBI nr
Match: KAG7022425.1 (Transcription termination factor MTEF1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 407 bits (1045), Expect = 1.29e-140
Identity = 204/283 (72.08%), Postives = 235/283 (83.04%), Query Frame = 0


Query: 1   MAVGAPVLSHSFPAVSSFSHFTTPTPTTRSRHPHLHPPSINFRTSHHQNIRYLKSLNIIE 60
           MAVGA  LS  F  +SS SH  TPT    SR P   PP +NFRT+H+ N+RYLKSL++++
Sbjct: 1   MAVGA--LSRPFTTISSLSHSNTPT----SRPP---PPFLNFRTAHYHNLRYLKSLHLLD 60

Query: 61  PQ-TRFQSPDAVDQILTTVHFLKSKGFSDSDFPRLAFLCPNLFTSNFDTTDIAPVFHFLA 120
            + T+F+SPDAV  IL TVHFLKSKGFSDSDFP LAFLCP LF+ +F+ TDIAPVF FLA
Sbjct: 61  SRSTKFRSPDAVHSILATVHFLKSKGFSDSDFPTLAFLCPQLFSPDFEPTDIAPVFDFLA 120

Query: 121 TDISASLQESRGLILRCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVE 180
            D+SAS+QESRG+ILRCP++LFSDVELCL+PT RFLKQ+GIENL +PSNL SHLLNTRVE
Sbjct: 121 ADLSASIQESRGMILRCPRLLFSDVELCLRPTLRFLKQIGIENLNTPSNLKSHLLNTRVE 180

Query: 181 KLRSKIRFLQEIGFSHEEASKVCGRMPAMFGYSVKENLRPKYEYFVKEMERDLEELKGFP 240
           KLR K RFLQE+GFSHEEA+KVC RMPA+FGYSV+ENLRPKYEY V EMERD+EELK FP
Sbjct: 181 KLRGKFRFLQELGFSHEEAAKVCRRMPAIFGYSVEENLRPKYEYLVNEMERDVEELKEFP 240

Query: 241 QYFGFSLEGRIMPRHLHLKQRGLHIPLNSMLLWSHNRFYSKWK 282
            YF FSLE RI PRHLHLKQR L IPL+ MLLWS  +FY+KWK
Sbjct: 241 HYFAFSLERRIAPRHLHLKQRNLRIPLHRMLLWSDQKFYTKWK 274

[Close]

BLAST of Chy1G000020 vs. TAIR 10
Match: AT3G18870.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 305.1 bits (780), Expect = 6.0e-83
Identity = 150/274 (54.74%), Postives = 198/274 (72.26%), Query Frame = 0


Query: 10  HSFPAVSSFSHFTTPTPTTRSRHPHLHPPSINFRTSHHQNIRYLKSLNIIEPQTRFQSP- 69
           H    +SSFS  + P+P++        P  + F+TSH +N+R+L SL I+    R   P 
Sbjct: 8   HHLQPLSSFS--SPPSPSSSK------PLYLKFQTSHRENLRHLSSLGIVPQNPRLAPPA 67

Query: 70  DAVDQILTTVHFLKSKGFSDSDFPRLAFLCPNLFTSNFDTTDIAPVFHFLATDISASLQE 129
           + +  IL+ V+ LKSKG SD DFPRL FLCP LF+  FD + + PVF FL  ++ AS +E
Sbjct: 68  NDLSVILSAVNLLKSKGISDEDFPRLVFLCPQLFSPTFDISKLDPVFDFLTGELGASAEE 127

Query: 130 SRGLILRCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVEKLRSKIRFL 189
           SRGLI+ CP ILFSDVE CL+PT  +LK+LG+ NL   S  N+H+LNTRVEKLR+K+RFL
Sbjct: 128 SRGLIVNCPNILFSDVEYCLRPTLVYLKELGVRNLNRASKTNAHVLNTRVEKLRAKMRFL 187

Query: 190 QEIGFSHEEASKVCGRMPAMFGYSVKENLRPKYEYFVKEMERDLEELKGFPQYFGFSLEG 249
           + IGF HEEA++VCGR+PA+FGYSV++NLRPK+E+ V +MER+LEELK FPQYF FSL  
Sbjct: 188 KSIGFEHEEAARVCGRIPAIFGYSVEDNLRPKFEFLVYDMERELEELKKFPQYFAFSLGK 247

Query: 250 RIMPRHLHLKQRGLHIPLNSMLLWSHNRFYSKWK 283
           RI PRH HLK++ + + L+ ML+W   +FYSKWK
Sbjct: 248 RIRPRHWHLKKKNVRVSLSRMLMWGDQKFYSKWK 273

[Close]

BLAST of Chy1G000020 vs. TAIR 10
Match: AT2G34620.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 165.6 bits (418), Expect = 5.7e-41
Identity = 103/270 (38.15%), Postives = 154/270 (57.04%), Query Frame = 0


Query: 17  SFSHFTTPTPTTRSRHPHLHP----PSINFRTSHHQNIRYLKSLNIIEPQTRFQSP---- 76
           S S F +  PTT   + H HP              + I  L+ + I   +    +P    
Sbjct: 22  SQSTFLSTKPTTIKTNLHSHPLFTVADQTVTLQMKEKILCLELMGIDSGKALSLNPCLCS 81

Query: 77  DAVDQILTTVHFLKSKGFSDSDFPRLAFLCPNLFTSNFDTTDIAPVFHFLATDISASLQE 136
             +D I + +HFL+SKG   +D PR+  +CP + TS+   T++ PVF FL+ D+      
Sbjct: 82  APLDSIQSVLHFLQSKGIYPNDLPRILGMCPKILTSDV-RTELYPVFMFLSNDLHVPENA 141

Query: 137 SRGLILRCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVE-KLRSKIRF 196
            R +I +CP++L S VE  LKP   +L++LG+++L++ +  +  LL + VE  L  K+RF
Sbjct: 142 FRRVIKKCPRLLISSVEDQLKPALFYLQRLGLKDLEALAYQDPILLVSSVEHTLIPKLRF 201

Query: 197 LQEIGFSHEEASKVCGRMPAMFGYSVKENLRPKYEYFVKEMERDLEELKGFPQYFGFSLE 256
           L+ IGFS  EA  +  R PA+F +S++ N +PK +YF+ E++  LE LK FPQYF FSLE
Sbjct: 202 LESIGFSRPEAIGMILRCPALFTFSIENNFKPKLDYFMSEIKGKLENLKEFPQYFAFSLE 261

Query: 257 GRIMPRHLHLKQRGLHIPLNSMLLWSHNRF 278
            RI PRHL   +RGL +PL+ ML  +   F
Sbjct: 262 KRIKPRHLESMERGLELPLSLMLKSTDEEF 290

[Close]

BLAST of Chy1G000020 vs. TAIR 10
Match: AT2G03050.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 151.8 bits (382), Expect = 8.5e-37
Identity = 92/236 (38.98%), Postives = 139/236 (58.90%), Query Frame = 0


Query: 48  QNIRYLKSLNIIEPQTRFQSPD----AVDQILTTVHFLKSKGFSDSDFPRLAFLCPNLFT 107
           + + YL+ LN+   +    +P      +  +++    L S G S     R+  + P+L T
Sbjct: 34  EKLIYLQDLNVDPHKALRVNPSLRSAPISSVVSVETLLSSTGLSRPAVGRILDMFPDLLT 93

Query: 108 SNFDTTDIAPVFHFLATDISASLQESRGLILRCPKILFSDVELCLKPTHRFLKQLGIENL 167
           S+   ++I PV  FL+ +IS S Q+    I RCP++L S V+  L+P   FLK LG    
Sbjct: 94  SD-PESEILPVLRFLSNEISISEQDIPKSISRCPRLLISSVDYQLRPALTFLKTLGFVGR 153

Query: 168 KSPSNLNSHLLNTRVEK-LRSKIRFLQE-IGFSHEEASKVCGRMPAMFGYSVKENLRPKY 227
            + ++ N+ LL + VE+ L  KI +L+E +GF+ EE +K+  R PA+  YSV  NL PK 
Sbjct: 154 DTITSRNTVLLVSNVERTLIPKIEYLEEGLGFTREEVAKMVVRSPALLTYSVDNNLVPKV 213

Query: 228 EYFVKEMERDLEELKGFPQYFGFSLEGRIMPRHLHLKQRGLHIPLNSMLLWSHNRF 278
           E+F++EM  D++ELK FPQYF FSLE +I PRH  LK+ G+ +PL+ ML  S  +F
Sbjct: 214 EFFIEEMRGDVKELKRFPQYFSFSLERKIKPRHRLLKEHGILMPLSEMLKVSDGQF 268

[Close]

BLAST of Chy1G000020 vs. TAIR 10
Match: AT2G36000.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 126.3 bits (316), Expect = 3.8e-29
Identity = 90/262 (34.35%), Postives = 137/262 (52.29%), Query Frame = 0


Query: 13  PAVSSFSHFTTPTPTTRSRHPHLHPPSINFRTSHHQNIRYLKSLNIIEP--QTRFQSPDA 72
           P + S S  TT T TT +    +H   I   +     I +L  +N   P   T   + ++
Sbjct: 51  PDIPSLSSTTTTTTTTETLESSIHEKLIYLDS---LGIDFLTLINRHPPLLSTALSAVES 110

Query: 73  VDQILTTVHFLKSKGFSDSDFPRLAFLCPNLFTSNFDTTDIAPVFHFLATDISA-SLQES 132
           V   +TT        F+  DF RL  +CP L TS   T+   PV  FL  ++   S+ + 
Sbjct: 111 VVDYMTTPPI----NFTLQDFRRLVSMCPELLTSPL-TSHTIPVITFLLREVGVDSIFDL 170

Query: 133 RGLILRCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVE-KLRSKIRFL 192
           R  + R P++L   V+  L+PT  FL+++GI +     + +++LL+  V+ KL  +I + 
Sbjct: 171 RQALRRRPRLLACSVDHQLRPTLYFLQRIGILD----PHKHTYLLSCSVDNKLVPRIDYF 230

Query: 193 QEIGFSHEEASKVCGRMPAMFGYSVKENLRPKYEYFVKEMERDLEELKGFPQYFGFSLEG 252
           +++GFS   A+ +  R P +F YS+ EN  PK +Y + EM RD+ E+  FPQYF FSLE 
Sbjct: 231 EKLGFSRRSATAMFKRFPQLFNYSIAENYEPKLKYLMVEMGRDVREVLEFPQYFSFSLEN 290

Query: 253 RIMPRHLHLKQRGLHIPLNSML 271
           RI PRH     +G+  PL  ML
Sbjct: 291 RIKPRHEACAAKGVRFPLPVML 300

[Close]

BLAST of Chy1G000020 vs. TAIR 10
Match: AT2G36000.2 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 126.3 bits (316), Expect = 3.8e-29
Identity = 90/262 (34.35%), Postives = 137/262 (52.29%), Query Frame = 0


Query: 13  PAVSSFSHFTTPTPTTRSRHPHLHPPSINFRTSHHQNIRYLKSLNIIEP--QTRFQSPDA 72
           P + S S  TT T TT +    +H   I   +     I +L  +N   P   T   + ++
Sbjct: 51  PDIPSLSSTTTTTTTTETLESSIHEKLIYLDS---LGIDFLTLINRHPPLLSTALSAVES 110

Query: 73  VDQILTTVHFLKSKGFSDSDFPRLAFLCPNLFTSNFDTTDIAPVFHFLATDISA-SLQES 132
           V   +TT        F+  DF RL  +CP L TS   T+   PV  FL  ++   S+ + 
Sbjct: 111 VVDYMTTPPI----NFTLQDFRRLVSMCPELLTSPL-TSHTIPVITFLLREVGVDSIFDL 170

Query: 133 RGLILRCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVE-KLRSKIRFL 192
           R  + R P++L   V+  L+PT  FL+++GI +     + +++LL+  V+ KL  +I + 
Sbjct: 171 RQALRRRPRLLACSVDHQLRPTLYFLQRIGILD----PHKHTYLLSCSVDNKLVPRIDYF 230

Query: 193 QEIGFSHEEASKVCGRMPAMFGYSVKENLRPKYEYFVKEMERDLEELKGFPQYFGFSLEG 252
           +++GFS   A+ +  R P +F YS+ EN  PK +Y + EM RD+ E+  FPQYF FSLE 
Sbjct: 231 EKLGFSRRSATAMFKRFPQLFNYSIAENYEPKLKYLMVEMGRDVREVLEFPQYFSFSLEN 290

Query: 253 RIMPRHLHLKQRGLHIPLNSML 271
           RI PRH     +G+  PL  ML
Sbjct: 291 RIKPRHEACAAKGVRFPLPVML 300

The following BLAST results are available for this feature:

BLAST of Chy1G000020 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84X53	1.2e-35	38.98	Transcription termination factor MTEF1, chloroplastic OS=Arabidopsis thaliana OX...	[more]
F4JVI3	2.3e-15	28.50	Transcription termination factor MTERF5, chloroplastic OS=Arabidopsis thaliana O...	[more]
Q9FM80	1.1e-12	23.95	Transcription termination factor MTERF9, chloroplastic OS=Arabidopsis thaliana O...	[more]
F4IHL3	5.4e-12	26.86	Transcription termination factor MTERF2, chloroplastic OS=Arabidopsis thaliana O...	[more]
Q9SZL6	1.1e-09	23.50	Transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Arabidop...	[more]

BLAST of Chy1G000020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K870	3.0e-154	96.10	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G075660 PE=3 SV=1	[more]
A0A5D3C479	8.6e-154	95.39	Transcription termination factor MTEF1 OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A1S3BZK0	8.6e-154	95.39	transcription termination factor MTEF1, chloroplastic OS=Cucumis melo OX=3656 GN...	[more]
A0A6J1JEA2	6.2e-112	72.79	transcription termination factor MTEF1, chloroplastic OS=Cucurbita maxima OX=366...	[more]
A0A6J1EZY9	3.8e-109	72.08	transcription termination factor MTEF1, chloroplastic OS=Cucurbita moschata OX=3...	[more]

BLAST of Chy1G000020 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011658929.1	1.90e-199	96.10	transcription termination factor MTEF1, chloroplastic [Cucumis sativus] >KGN4398...	[more]
XP_008454873.1	7.73e-199	95.39	PREDICTED: transcription termination factor MTEF1, chloroplastic [Cucumis melo] ...	[more]
XP_038887809.1	4.54e-168	84.75	transcription termination factor MTEF1, chloroplastic [Benincasa hispida]	[more]
XP_022988882.1	7.40e-144	72.79	transcription termination factor MTEF1, chloroplastic [Cucurbita maxima]	[more]
KAG7022425.1	1.29e-140	72.08	Transcription termination factor MTEF1, chloroplastic, partial [Cucurbita argyro...	[more]

BLAST of Chy1G000020 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18870.1	6.0e-83	54.74	Mitochondrial transcription termination factor family protein	[more]
AT2G34620.1	5.7e-41	38.15	Mitochondrial transcription termination factor family protein	[more]
AT2G03050.1	8.5e-37	38.98	Mitochondrial transcription termination factor family protein	[more]
AT2G36000.1	3.8e-29	34.35	Mitochondrial transcription termination factor family protein	[more]
AT2G36000.2	3.8e-29	34.35	Mitochondrial transcription termination factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	SMART	SM00733	mt_12	coord: 232..263 e-value: 0.08 score: 22.1 coord: 130..161 e-value: 8.7E-4 score: 28.6 coord: 166..194 e-value: 100.0 score: 11.6 coord: 92..125 e-value: 1400.0 score: 2.8 coord: 56..87 e-value: 400.0 score: 7.0 coord: 199..231 e-value: 3.5E-4 score: 29.9
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PFAM	PF02536	mTERF	coord: 131..277 e-value: 7.4E-31 score: 107.2
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PANTHER	PTHR13068	CGI-12 PROTEIN-RELATED	coord: 23..282
IPR038538	MTERF superfamily, mitochondrial/chloroplastic	GENE3D	1.25.70.10	Transcription termination factor 3, mitochondrial	coord: 42..282 e-value: 6.6E-44 score: 152.0
None	No IPR available	PANTHER	PTHR13068:SF139	TRANSCRIPTION TERMINATION FACTOR MTEF1, CHLOROPLASTIC	coord: 23..282

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy1G000020.1	Chy1G000020.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0032502	developmental process
biological_process	GO:0006353	DNA-templated transcription, termination
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003690	double-stranded DNA binding