Chy12G220690 (gene) Cucumber (hystrix) v1

Overview


Name	Chy12G220690
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH12: 18639922 .. 18641657 (-)
RNA-Seq Expression	Chy12G220690
Synteny	Chy12G220690

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGCCCGTTGGGGTGTTCTGACGACTGTGCGTATTTGGCTTGAACAGGCATATGGAAGACTACAGCAGAGCTCGGAAATGGTGGCGGTGACGATGGAGGAGTGGAGGATAGCGATACTAGGATTATGTGTATCATCGGCAATTGGGATTGCAACAGTGTCTACTCAAATCAAAACCAAGCTTCCAAAGTCATTTCAGTTTCTATCCATTGTTGTTTTGCTGTGTTTTGTGTCTGTTGTGATTGCAACAATGATCAAGTCCATTTTCAGAACACTCTCAAATATTCTGTATTGTGCTGGAGGTTTCTTGATTGTTACAATCTGTTTCGTTGTTACGGCTATTCCTTATGGTACACATTTTCATATAATTGTTTTTGTCCTTTATACAATTTTCTGCACCTTCGTCATCTTCATCTCCATCACTCGCAACCCTCCACCTTCCTCCTCCAATATCCTTCCTCTTTAATTTGATACAACACATCTATCAATCCAAACTCAGTAAAGCTTCTTCGTCCTATGATGCATCTTTCTCTTTCTTCTTTTAATTTTCATTCTTTTGAGAGTTGGTTGTAAAACAAATTGAAAATCAGATGGGTTGTGTTAGAATCTTATAATAATTGTGGAAAGATTATGGGAATATTTTTCCTAATTCCTAAATCTTTTCCTTTTATTCTATTTATTTTCTCTTGTAGCTATTGCATTGTTCTATTCATCGATTCTATAATAACACTAAAAATGTCATATTTTTTTTTTGTTCTCGAATTTCCATTTAAGCCTTGGTTTCGTGGATGGTTCTCTCTATGTTCAAGCGTCTATATTGTTGCTTCCTCTCCACAAATGAGAAAGGATGTTAGTGCTATATCATTAAATGTATCTTTAACCATTAGTTAAAATTTTCGAGTGAATTGGTGGTTTGATAGATTGCTTAGTTACTGTTTTTATTACTAATATAATAGTTATCATCAAGGAATCTTTTGGTGATGGAAAGATAAAAAAGTAATTACAAATGATAACTGACCTACGTTTGTTTTTATTAAAGAAACGTGTACAGAAAATTTGGTAATTTGAATAATAAAAAGAAAACAAGAATTGAGGTCATATTATTCATTATCTTTTTATATTGTTTTAAGTAGATAGTTATTGTCAAAACAAAAAAGCAAAGCCACTCCGTCGACAGGCATAATGATATTTGACTTTAAATATGTTTGGAATTTGGAAACAATGTAGCTACTTGTCGCAAAGTGCGCACGTTTGGGATTATTGATCAATCAAATTACGGTAATGTCAAATGTTTTTCTTGCAACCTTTCGATTGAATAAACTAGCTTTTTCCAATAATAATAAACCCTCCAATATTGATTCCCTAGCAAGAGATTAAAAAAAATAGGGTTATATGAAAATACTGCAAAGAAACACTATATGTATTGGGGAAAAAAACACATAGTATCTAATGATCTATTAGTAATATAATATATATTGAAAAAACAACATTAGAAAATATTCTTAAAAAATATTTACGTTGAAATATATGATCACAAAACAGAAAAAAACGAAGTCAATCGTTGTGATCTACATTGGGGTTAGTAAAGACATATACGTACCCTTCAAATCATTGTGTGTTGCATTTTAAAATATTACTTTATCGTGTAAATTAAATTTAGGTTTGGCTTCAAAGTCCATCTGCAGGAAGAAAGTTGGAATTGAAAAGGTAAAAGAAGGCAAATCCCTAAAGTGA

mRNA sequence

ATGTTGGCCCGTTGGGGTGTTCTGACGACTGTGCGTATTTGGCTTGAACAGGCATATGGAAGACTACAGCAGAGCTCGGAAATGGTGGCGGTGACGATGGAGGAGTGGAGGATAGCGATACTAGGATTATGTGTATCATCGGCAATTGGGATTGCAACAGTGTCTACTCAAATCAAAACCAAGCTTCCAAAGTCATTTCAGTTTCTATCCATTGTTGTTTTGCTGTGTTTTGTGTCTGTTGTGATTGCAACAATGATCAAGTCCATTTTCAGAACACTCTCAAATATTCTGTATTGTGCTGGAGGTTTCTTGATTGTTACAATCTGTTTCGTTGTTACGGCTATTCCTTATGGTTTGGCTTCAAAGTCCATCTGCAGGAAGAAAGTTGGAATTGAAAAGGTAAAAGAAGGCAAATCCCTAAAGTGA

Coding sequence (CDS)

ATGTTGGCCCGTTGGGGTGTTCTGACGACTGTGCGTATTTGGCTTGAACAGGCATATGGAAGACTACAGCAGAGCTCGGAAATGGTGGCGGTGACGATGGAGGAGTGGAGGATAGCGATACTAGGATTATGTGTATCATCGGCAATTGGGATTGCAACAGTGTCTACTCAAATCAAAACCAAGCTTCCAAAGTCATTTCAGTTTCTATCCATTGTTGTTTTGCTGTGTTTTGTGTCTGTTGTGATTGCAACAATGATCAAGTCCATTTTCAGAACACTCTCAAATATTCTGTATTGTGCTGGAGGTTTCTTGATTGTTACAATCTGTTTCGTTGTTACGGCTATTCCTTATGGTTTGGCTTCAAAGTCCATCTGCAGGAAGAAAGTTGGAATTGAAAAGGTAAAAGAAGGCAAATCCCTAAAGTGA

Protein sequence

MLARWGVLTTVRIWLEQAYGRLQQSSEMVAVTMEEWRIAILGLCVSSAIGIATVSTQIKTKLPKSFQFLSIVVLLCFVSVVIATMIKSIFRTLSNILYCAGGFLIVTICFVVTAIPYGLASKSICRKKVGIEKVKEGKSLK*

Homology

[Close]

BLAST of Chy12G220690 vs. ExPASy TrEMBL
Match: A0A0A0LSX4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G040520 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 5.3e-27
Identity = 68/105 (64.76%), Postives = 79/105 (75.24%), Query Frame = 0


Query: 13  IWLEQAYGRLQQSSEMVAVTMEEWRIAILGLCVSSAIGIATVSTQIKTKLPKSFQFLSIV 72
           +W  QAYG +++S E+ A  +EEW+  I+G CVSSAIGIATVS  IKT+LP SFQ LSI 
Sbjct: 10  VWFRQAYGGVRRSFEVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNSFQLLSIA 69

Query: 73  VLLCFVSVVIATMIKSIFRTLSNILYCAGGFLIVTICFVVTAIPY 118
           VLLCFVSVV A MI SIF TLS ILYC GG L  + CF+ TAIPY
Sbjct: 70  VLLCFVSVVFARMINSIFETLSKILYCVGGLLYASSCFIATAIPY 114

[Close]

BLAST of Chy12G220690 vs. ExPASy TrEMBL
Match: A0A0A0LCY2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G851175 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 5.3e-27
Identity = 69/108 (63.89%), Postives = 82/108 (75.93%), Query Frame = 0


Query: 10  TVRIWLEQAYGRLQQSSEMVAVTMEEWRIAILGLCVSSAIGIATVSTQIKTKLPKSFQFL 69
           TV +W  Q YG +++S E+VA  +EE +  I+G C+SSAIGIATVS Q KTKLP SFQFL
Sbjct: 8   TVAVWFRQTYGGVRRSLEVVAEMVEERKEMIIGFCLSSAIGIATVSVQTKTKLPNSFQFL 67

Query: 70  SIVVLLCFVSVVIATMIKSIFRTLSNILYCAGGFLIVTICFVVTAIPY 118
           SI VL+CF+SV  A MI SIF+TLS ILYC GGFL  T CF+ TAIPY
Sbjct: 68  SIAVLICFLSVGFARMISSIFKTLSKILYCFGGFLCATCCFIATAIPY 115

[Close]

BLAST of Chy12G220690 vs. ExPASy TrEMBL
Match: A0A0A0LQP5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G040510 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.4e-24
Identity = 68/117 (58.12%), Postives = 82/117 (70.09%), Query Frame = 0


Query: 1   MLARWGVLTTVRIWLEQAYGRLQQSSEMVAVTMEEWRIAILGLCVSSAIGIATVSTQIKT 60
           ML    ++  V  W  Q Y   ++S E+VA T+EE +  I+GLCVSSAIGI T S QIKT
Sbjct: 1   MLGWCALIVAVGAWFRQPYCGARRSLEIVAETVEERKEFIIGLCVSSAIGIVTTSVQIKT 60

Query: 61  KLPKSFQFLSIVVLLCFVSVVIATMIKSIFRTLSNILYCAGGFLIVTICFVVTAIPY 118
           KLP SFQ LS+ +LLCFVSVV A MI+S+FRTLS ILYC G F+  T CF+ TAI Y
Sbjct: 61  KLPNSFQCLSMPILLCFVSVVFARMIESVFRTLSEILYCVGDFMCATTCFIATAISY 117

[Close]

BLAST of Chy12G220690 vs. ExPASy TrEMBL
Match: A0A0A0LQB6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G041520 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 4.1e-19
Identity = 61/92 (66.30%), Postives = 71/92 (77.17%), Query Frame = 0


Query: 28  MVAVTMEEWRIAILGLCVSSAIGIATVSTQIKT--KLPKSFQFLSIVVLLCFVSVVIATM 87
           MVA  +EEW+  I+ LCVSSAIGIATVS QI+T  +LPK+FQFLSIVVLLCF  V  A M
Sbjct: 39  MVAEMVEEWKEMIVALCVSSAIGIATVSVQIETNKQLPKTFQFLSIVVLLCFGFVGFAKM 98

Query: 88  IKSIFRTLSNILYCAGGFLIVTICFVVTAIPY 118
            K IF+T+S ILYC GGFL VT  F+ TAIP+
Sbjct: 99  TKPIFKTVSKILYCVGGFLGVTAFFIATAIPF 130

[Close]

BLAST of Chy12G220690 vs. ExPASy TrEMBL
Match: A0A0A0LEV1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000430 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 3.9e-06
Identity = 37/90 (41.11%), Postives = 52/90 (57.78%), Query Frame = 0


Query: 27  EMVAVTMEEWRIAILGLCVSSAIGIATVSTQIKTKLPKSFQFLSIVVLLCFVSVVIATMI 86
           E+VA  +EE +I I+G   +    IA +S Q K KLP SF+F+SI  LLC +  V A +I
Sbjct: 11  EVVAKMVEEQKIKIIGFHAAFTFAIAALSVQAKAKLPDSFEFVSITSLLCLLCFVSAMII 70

Query: 87  KSIFRTLSNILYCAGGFLIVTICFVVTAIP 117
              F+T + +LY  G F  +T   +  AIP
Sbjct: 71  DFSFKTFAKVLYFLGAFFCMTSYLIAAAIP 100

[Close]

BLAST of Chy12G220690 vs. NCBI nr
Match: KAE8652531.1 (hypothetical protein Csa_013077, partial [Cucumis sativus])

HSP 1 Score: 124 bits (311), Expect = 7.75e-34
Identity = 66/100 (66.00%), Postives = 76/100 (76.00%), Query Frame = 0


Query: 18  AYGRLQQSSEMVAVTMEEWRIAILGLCVSSAIGIATVSTQIKTKLPKSFQFLSIVVLLCF 77
           AYG +++S E+ A  +EEW+  I+G CVSSAIGIATVS  IKT+LP SFQ LSI VLLCF
Sbjct: 1   AYGGVRRSFEVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNSFQLLSIAVLLCF 60

Query: 78  VSVVIATMIKSIFRTLSNILYCAGGFLIVTICFVVTAIPY 117
           VSVV A MI SIF TLS ILYC GG L  + CF+ TAIPY
Sbjct: 61  VSVVFARMINSIFETLSKILYCVGGLLYASSCFIATAIPY 100

[Close]

BLAST of Chy12G220690 vs. NCBI nr
Match: KGN60003.2 (hypothetical protein Csa_000735, partial [Cucumis sativus])

HSP 1 Score: 102 bits (253), Expect = 4.23e-25
Identity = 55/88 (62.50%), Postives = 67/88 (76.14%), Query Frame = 0


Query: 10 TVRIWLEQAYGRLQQSSEMVAVTMEEWRIAILGLCVSSAIGIATVSTQIKTKLPKSFQFL 69
          TV +W  Q YG +++S E+VA  +EE +  I+G C+SSAIGIATVS Q KTKLP SFQFL
Sbjct: 8  TVAVWFRQTYGGVRRSLEVVAEMVEERKEMIIGFCLSSAIGIATVSVQTKTKLPNSFQFL 67

Query: 70 SIVVLLCFVSVVIATMIKSIFRTLSNIL 97
          SI VL+CF+SV  A MI SIF+TLS IL
Sbjct: 68 SIAVLICFLSVGFARMISSIFKTLSKIL 95

[Close]

BLAST of Chy12G220690 vs. NCBI nr
Match: KAG6572911.1 (hypothetical protein SDJN03_26798, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 90.1 bits (222), Expect = 1.06e-19
Identity = 50/98 (51.02%), Postives = 64/98 (65.31%), Query Frame = 0


Query: 20  GRLQQSSEMVAVTMEEWRIAILGLCVSSAIGIATVSTQIKTKLPKSFQFLSIVVLLCFVS 79
           G   +++   A  +EEW+  I+  CVSSAI IATVS QI+ KLP+ F FLS+ +LLCF  
Sbjct: 27  GGPSEAAVAAAEMVEEWKDMIVAFCVSSAIAIATVSVQIEKKLPRVFNFLSLTLLLCFGF 86

Query: 80  VVIATMIKSIFRTLSNILYCAGGFLIVTICFVVTAIPY 117
           V    M KSI + +S ILYC GG L VT  F+ +AIPY
Sbjct: 87  VAFGKMTKSILKRVSRILYCVGGVLGVTALFIASAIPY 124

[Close]

BLAST of Chy12G220690 vs. NCBI nr
Match: KAG6584385.1 (hypothetical protein SDJN03_20317, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 62.4 bits (150), Expect = 6.56e-09
Identity = 45/111 (40.54%), Postives = 58/111 (52.25%), Query Frame = 0


Query: 18  AYGRLQQSSEMVAVTME-----------EWRIAILGLCVSSAIGIATVSTQIKTKLPKSF 77
           A GRL  S E  A   +           +W   ++  C+ +AI IATVS QI+TKL   F
Sbjct: 33  ANGRLVHSEEAGAAEYQWRPVSAVEMLMQWENMMVTFCMGTAIAIATVSVQIQTKLSPMF 92

Query: 78  QFLSIVVLLCFVSVVIATMIKSIFRTLSNILYCAGGFLIVTICFVVTAIPY 117
           QFLS  ++ CF     A +IK   + +S ILY  GGF  VT  F+  AIPY
Sbjct: 93  QFLSGALMGCFCFTTSAKLIKH--QRVSLILYFLGGFCFVTAFFIAIAIPY 141

[Close]

BLAST of Chy12G220690 vs. NCBI nr
Match: KAF3947053.1 (hypothetical protein CMV_026760 [Castanea mollissima])

HSP 1 Score: 55.5 bits (132), Expect = 2.67e-06
Identity = 36/108 (33.33%), Postives = 58/108 (53.70%), Query Frame = 0


Query: 15  LEQAYGRLQQSSEMVAVTMEEWRIAILGLCVSSAIGIATVSTQIKTKLPKSFQFLSIVVL 74
           ++QA    + +  +V V  +EW    +  C++SAI IA VS Q+ ++L  +F  LS+ +L
Sbjct: 39  IDQAEAPARAAVGVVEVQHKEWTELTVTFCLASAIDIALVSVQVNSQLSTAFHLLSLTIL 98

Query: 75  LCFVSVVIATMIKSIFRTLSNILYCAGGFLIVTICFVVTAIPYGLASK 122
           L F S V++  IK  F   + +L   G F  +T  F+   IP+ L  K
Sbjct: 99  LAFASFVVSKFIKFKFLVSAQVLENFGVFFTMTAFFMAITIPFPLYLK 146

The following BLAST results are available for this feature:

BLAST of Chy12G220690 vs.


Match Name	E-value	Identity	Description

BLAST of Chy12G220690 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LSX4	5.3e-27	64.76	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G040520 PE=4 SV=1	[more]
A0A0A0LCY2	5.3e-27	63.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G851175 PE=4 SV=1	[more]
A0A0A0LQP5	1.4e-24	58.12	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G040510 PE=4 SV=1	[more]
A0A0A0LQB6	4.1e-19	66.30	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G041520 PE=4 SV=1	[more]
A0A0A0LEV1	3.9e-06	41.11	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000430 PE=4 SV=1	[more]

BLAST of Chy12G220690 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8652531.1	7.75e-34	66.00	hypothetical protein Csa_013077, partial [Cucumis sativus]	[more]
KGN60003.2	4.23e-25	62.50	hypothetical protein Csa_000735, partial [Cucumis sativus]	[more]
KAG6572911.1	1.06e-19	51.02	hypothetical protein SDJN03_26798, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6584385.1	6.56e-09	40.54	hypothetical protein SDJN03_20317, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAF3947053.1	2.67e-06	33.33	hypothetical protein CMV_026760 [Castanea mollissima]	[more]

BLAST of Chy12G220690 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34741	IMAP FAMILY MEMBER 1, PUTATIVE-RELATED	coord: 17..122
None	No IPR available	PANTHER	PTHR34741:SF2	IMAP FAMILY MEMBER 1, PUTATIVE-RELATED	coord: 17..122

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy12G220690.1	Chy12G220690.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0000976	transcription cis-regulatory region binding