Chy12G220190 (gene) Cucumber (hystrix) v1

Overview
NameChy12G220190
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH12: 18261099 .. 18262012 (-)
RNA-Seq ExpressionChy12G220190
SyntenyChy12G220190
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAGACTGATGAGAGAAATGAGCAGTCAAAATGGAAGCTTTGGGCTCGCCGGCGGTGAAACTTATTGGTTGTTTTGGGTGGCTTTGTTTACACTCTGCATAATTTCCACTGCAATTTTCTCTTGCTCCGATGGCATGTCGAAAGACCGGAATTCCACGGTTGACGTTGAGCTTTACGGCGGCGGTTGTGCCGCCGGGTGTGGCGCTGGATGTGGTGCTTGAAAAATAGACAACCCCTCGCCTTCTTTTCTTCTTCTTCTTTTTCTTCTATAGGAAACAGATTATGTTTTGGATTTTTAAAGCCATGAGAGAAACAGAGAGAGAGCTTGTTTTGAAGATACTGACTGACATCAATTTTGTTACATTTTCACTGTGATTTAGCAGCAGCCTCGAGTTTAGTACTTCTCTTTTATTATTGTTATTATCATTATAATGTTAATACAAATCGTTAGAGGTTCTAACATGACTATGCAAGGCTTGGTTTTTTATATAGATTTGATTCAATACTTAAGTTTTACTTGTTTTACTTTATTTGGAGATATATAACACGTAAACGTTCTTGAAGCCATACATATCTTTATATCTTTCAAATATCATAAATATATTTTACAATCACAATTTAGTCGAACTAGCTTATTCAATCAAACGACTATCACGATGACACGTGCTAGCTATTGGCTAAAATTGATAACTAGTATTAATCAATCTTAATTTAGTAATCATTGAGGTAATTGGAGGATCGAGTTGTGTACCTTTTTATGACAATATAATTAGATTAATTGTGGGCTTATTTAACAGTTTATAAAAAGTTAGCAATCGGTTCATTAAATAAGTCAAGATGGCCGAGTTGGTCTAAGGCGCCAGTTTCAGGTACTGGTCCGAAAGGGCATGGGTTCGAATCCCATTCTTGA

mRNA sequence

ATGGCAAGACTGATGAGAGAAATGAGCAGTCAAAATGGAAGCTTTGGGCTCGCCGGCGGTGAAACTTATTGGTTGTTTTGGGTGGCTTTGTTTACACTCTGCATAATTTCCACTGCAATTTTCTCTTGCTCCGATGGCATGTCGAAAGACCGGAATTCCACGGTTGACGTTGAGCTTTACGGCGGCGGTTGTGCCGCCGGGTGTGGCGCTGGATGTGTTTATAAAAAGTTAGCAATCGGTTCATTAAATAAGTCAAGATGGCCGAGTTGGTCTAAGGCGCCAGTTTCAGGTACTGGTCCGAAAGGGCATGGGTTCGAATCCCATTCTTGA

Coding sequence (CDS)

ATGGCAAGACTGATGAGAGAAATGAGCAGTCAAAATGGAAGCTTTGGGCTCGCCGGCGGTGAAACTTATTGGTTGTTTTGGGTGGCTTTGTTTACACTCTGCATAATTTCCACTGCAATTTTCTCTTGCTCCGATGGCATGTCGAAAGACCGGAATTCCACGGTTGACGTTGAGCTTTACGGCGGCGGTTGTGCCGCCGGGTGTGGCGCTGGATGTGTTTATAAAAAGTTAGCAATCGGTTCATTAAATAAGTCAAGATGGCCGAGTTGGTCTAAGGCGCCAGTTTCAGGTACTGGTCCGAAAGGGCATGGGTTCGAATCCCATTCTTGA

Protein sequence

MARLMREMSSQNGSFGLAGGETYWLFWVALFTLCIISTAIFSCSDGMSKDRNSTVDVELYGGGCAAGCGAGCVYKKLAIGSLNKSRWPSWSKAPVSGTGPKGHGFESHS*
Homology
BLAST of Chy12G220190 vs. ExPASy TrEMBL
Match: A0A0A0LQU7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042580 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.1e-32
Identity = 70/72 (97.22%), Postives = 71/72 (98.61%), Query Frame = 0

Query: 1  MARLMREMSSQNGSFGLAGGETYWLFWVALFTLCIISTAIFSCSDGMSKDRNSTVDVELY 60
          MARLMRE+SSQNGSFGLAGGETYWLFWVALFTLCIIST IFSCSDGMSKDRNSTVDVELY
Sbjct: 1  MARLMREISSQNGSFGLAGGETYWLFWVALFTLCIISTLIFSCSDGMSKDRNSTVDVELY 60

Query: 61 GGGCAAGCGAGC 73
          GGGCAAGCGAGC
Sbjct: 61 GGGCAAGCGAGC 72

BLAST of Chy12G220190 vs. ExPASy TrEMBL
Match: A0A6P3ZT85 (uncharacterized protein LOC107418606 OS=Ziziphus jujuba OX=326968 GN=LOC107418606 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 3.0e-14
Identity = 41/72 (56.94%), Postives = 53/72 (73.61%), Query Frame = 0

Query: 1  MARLMREMSSQNGSFGLAGGETYWLFWVALFTLCIISTAIFSCSDGMSKDRNSTVDVELY 60
          M RL R+++S +GS    G   + + W+AL  +CIIS  IFSC+DG+SK++ ST D ELY
Sbjct: 1  MVRLWRDLASVHGS----GSAGFVVLWLALLGVCIISAIIFSCADGVSKEKTSTADTELY 60

Query: 61 GGGCAAGCGAGC 73
          GGGCAAGCGAGC
Sbjct: 61 GGGCAAGCGAGC 68

BLAST of Chy12G220190 vs. ExPASy TrEMBL
Match: A0A2P5AQX4 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_308610 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 8.9e-14
Identity = 41/73 (56.16%), Postives = 53/73 (72.60%), Query Frame = 0

Query: 1  MARLMREMSSQNGSFGLAGGETYWLFWVALF-TLCIISTAIFSCSDGMSKDRNSTVDVEL 60
          M RL RE +  +G  G +   T+ +F++ L  TLCI+ST IFSC+DG+SK++ S  D EL
Sbjct: 1  MVRLWREAAGVDGGVGSSHSGTFLVFFLGLLVTLCILSTIIFSCTDGVSKEKTSQADTEL 60

Query: 61 YGGGCAAGCGAGC 73
          YGGGCAAGCGAGC
Sbjct: 61 YGGGCAAGCGAGC 73

BLAST of Chy12G220190 vs. ExPASy TrEMBL
Match: A0A2P5FVW4 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_021890 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.5e-13
Identity = 41/73 (56.16%), Postives = 52/73 (71.23%), Query Frame = 0

Query: 1  MARLMREMSSQNGSFGLAGGETYWLFWVALF-TLCIISTAIFSCSDGMSKDRNSTVDVEL 60
          M RL RE +  +G  G +   T+ +F + L  TLCI+ST IFSC+DG+SK++ S  D EL
Sbjct: 1  MVRLWREAAGVDGGVGSSHSGTFLVFLLGLLVTLCILSTVIFSCTDGVSKEKTSQADTEL 60

Query: 61 YGGGCAAGCGAGC 73
          YGGGCAAGCGAGC
Sbjct: 61 YGGGCAAGCGAGC 73

BLAST of Chy12G220190 vs. ExPASy TrEMBL
Match: A0A803R005 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 7.5e-13
Identity = 40/72 (55.56%), Postives = 49/72 (68.06%), Query Frame = 0

Query: 1  MARLMREMSSQNGSFGLAGGETYWLFWVALFTLCIISTAIFSCSDGMSKDRNSTVDVELY 60
          M RL RE+++ +G  G   G         L TLCI+ST IFSC+DG+SK++ S  D ELY
Sbjct: 1  MVRLWREVANVDGGVGTGSGAFLIFLLGFLVTLCILSTIIFSCADGVSKEKTSQGDTELY 60

Query: 61 GGGCAAGCGAGC 73
          GGGCAAGCGAGC
Sbjct: 61 GGGCAAGCGAGC 72

BLAST of Chy12G220190 vs. NCBI nr
Match: KAE8652552.1 (hypothetical protein Csa_013579 [Cucumis sativus])

HSP 1 Score: 148 bits (374), Expect = 6.27e-44
Identity = 70/72 (97.22%), Postives = 71/72 (98.61%), Query Frame = 0

Query: 1   MARLMREMSSQNGSFGLAGGETYWLFWVALFTLCIISTAIFSCSDGMSKDRNSTVDVELY 60
           MARLMRE+SSQNGSFGLAGGETYWLFWVALFTLCIIST IFSCSDGMSKDRNSTVDVELY
Sbjct: 29  MARLMREISSQNGSFGLAGGETYWLFWVALFTLCIISTLIFSCSDGMSKDRNSTVDVELY 88

Query: 61  GGGCAAGCGAGC 72
           GGGCAAGCGAGC
Sbjct: 89  GGGCAAGCGAGC 100

BLAST of Chy12G220190 vs. NCBI nr
Match: KAG6584341.1 (hypothetical protein SDJN03_20273, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 121 bits (303), Expect = 1.81e-33
Identity = 62/73 (84.93%), Postives = 63/73 (86.30%), Query Frame = 0

Query: 1  MARLMREMSSQNGSFGLAGGETYWLFWVALFTLCIISTAIFSCSDGMS-KDRNSTVDVEL 60
          MARLMRE  SQNGSFGLAG + Y LFW ALFTLCIIST IFSCSDGMS KDRNST DVEL
Sbjct: 1  MARLMREFGSQNGSFGLAG-DIYLLFWAALFTLCIISTIIFSCSDGMSTKDRNSTADVEL 60

Query: 61 YGGGCAAGCGAGC 72
          YG GCAAGCGAGC
Sbjct: 61 YGAGCAAGCGAGC 72

BLAST of Chy12G220190 vs. NCBI nr
Match: KAG6572949.1 (hypothetical protein SDJN03_26836, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 97.4 bits (241), Expect = 4.34e-24
Identity = 50/70 (71.43%), Postives = 57/70 (81.43%), Query Frame = 0

Query: 1  MARLMREMSSQNGSFGLAGGETYWLFWVALFTLCIISTAIFSCSDGMSKDRNSTVDVELY 60
          MARL+ E+ S +GSFGL+G +   LF  ALFTLCIIS   FSCSDG+SK+RNST DVELY
Sbjct: 1  MARLIGEIGSVDGSFGLSG-DISCLFLAALFTLCIISLITFSCSDGISKERNSTADVELY 60

Query: 61 GGGCAAGCGA 70
          GGGCAAGCGA
Sbjct: 61 GGGCAAGCGA 69

BLAST of Chy12G220190 vs. NCBI nr
Match: XP_015882794.1 (uncharacterized protein LOC107418606 [Ziziphus jujuba])

HSP 1 Score: 87.4 bits (215), Expect = 4.00e-20
Identity = 41/72 (56.94%), Postives = 53/72 (73.61%), Query Frame = 0

Query: 1  MARLMREMSSQNGSFGLAGGETYWLFWVALFTLCIISTAIFSCSDGMSKDRNSTVDVELY 60
          M RL R+++S +GS    G   + + W+AL  +CIIS  IFSC+DG+SK++ ST D ELY
Sbjct: 1  MVRLWRDLASVHGS----GSAGFVVLWLALLGVCIISAIIFSCADGVSKEKTSTADTELY 60

Query: 61 GGGCAAGCGAGC 72
          GGGCAAGCGAGC
Sbjct: 61 GGGCAAGCGAGC 68

BLAST of Chy12G220190 vs. NCBI nr
Match: PON38946.1 (hypothetical protein PanWU01x14_308610 [Parasponia andersonii])

HSP 1 Score: 85.9 bits (211), Expect = 1.85e-19
Identity = 41/73 (56.16%), Postives = 53/73 (72.60%), Query Frame = 0

Query: 1  MARLMREMSSQNGSFGLAGGETYWLFWVALF-TLCIISTAIFSCSDGMSKDRNSTVDVEL 60
          M RL RE +  +G  G +   T+ +F++ L  TLCI+ST IFSC+DG+SK++ S  D EL
Sbjct: 1  MVRLWREAAGVDGGVGSSHSGTFLVFFLGLLVTLCILSTIIFSCTDGVSKEKTSQADTEL 60

Query: 61 YGGGCAAGCGAGC 72
          YGGGCAAGCGAGC
Sbjct: 61 YGGGCAAGCGAGC 73

BLAST of Chy12G220190 vs. TAIR 10
Match: AT3G18250.1 (Putative membrane lipoprotein )

HSP 1 Score: 44.3 bits (103), Expect = 7.4e-05
Identity = 22/51 (43.14%), Postives = 32/51 (62.75%), Query Frame = 0

Query: 23 YWLFWVALFTLCIISTAIFSCSDGMSKDRNSTVDVELYGGGC-AAGCGAGC 73
          + + ++A+   CI+S  +FSC+DG+S D  +T      GGGC  AGCG GC
Sbjct: 25 FHVVFLAVIGCCILSALLFSCADGVS-DNRATSGTSTGGGGCGGAGCGGGC 74

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LQU71.1e-3297.22Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042580 PE=4 SV=1[more]
A0A6P3ZT853.0e-1456.94uncharacterized protein LOC107418606 OS=Ziziphus jujuba OX=326968 GN=LOC10741860... [more]
A0A2P5AQX48.9e-1456.16Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_308610 PE... [more]
A0A2P5FVW41.5e-1356.16Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_021890 PE=4 SV... [more]
A0A803R0057.5e-1355.56Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAE8652552.16.27e-4497.22hypothetical protein Csa_013579 [Cucumis sativus][more]
KAG6584341.11.81e-3384.93hypothetical protein SDJN03_20273, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6572949.14.34e-2471.43hypothetical protein SDJN03_26836, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_015882794.14.00e-2056.94uncharacterized protein LOC107418606 [Ziziphus jujuba][more]
PON38946.11.85e-1956.16hypothetical protein PanWU01x14_308610 [Parasponia andersonii][more]
Match NameE-valueIdentityDescription
AT3G18250.17.4e-0543.14Putative membrane lipoprotein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 87..109
NoneNo IPR availablePANTHERPTHR37199:SF2MEMBRANE LIPOPROTEIN-RELATEDcoord: 1..72
NoneNo IPR availablePANTHERPTHR37199TRANSMEMBRANE PROTEINcoord: 1..72

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy12G220190.1Chy12G220190.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane