Chy12G218470 (gene) Cucumber (hystrix) v1

Overview


Name	Chy12G218470
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	LOB domain-containing protein
Location	chrH12: 17109983 .. 17111755 (+)
RNA-Seq Expression	Chy12G218470
Synteny	Chy12G218470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGATCAACAACAACAAGCAACCATTATTACAGCCCTTGTGCAGCTTGCAAATTCCTAAGAAGAAAATGCTTAGTAGGCTGTGTTTTTGCACCCTATTTTCCTCCTGAAGAACCCCAAAAATTTGTCAATGTCCACAAGGTGTTTGGAGCGAGTAACGTGGCGAAGCTCTTGAACGAAGTTCTTCCTCATCAACGACAAGATGCCGTCGTTTCGTTGGCCTACGAAGCTGAGGCAAGAATCAGAGATCCTGTTTATGGGTGTGTTGGAGCCATTTCTTTCCTTCAAAAACAGGTCCAAAGGCTTCAAAAGGAACTTGATGCTGCTAAAGCTCGCCTTTTTCTCTACTCTTGCACTGATTTCTCAACTCCCTTTTTGCCTCACCCTCAGATAATTAATACTCCTCATCATCCATTGATTTGGAATAATAATAGTAATTATAATAACAACAATCATAATGATACTAATAATCCTTCTATGTATTTAAATGGAGGAATATGAAAGATGAAAAGGGTTAATGGGTTGAGTTTATTGAAGGGTTTGTTTAATATTCTCATAAGAACTCAATATTTGAGATCTCTTTGTGGTTGGAAAGAGTTATTGTAGACTATATATATCAATATTGGCTTGTGCTATTAGGGTTTAGTTTTGATGTATTGTATCATGTTATTATTATTAGAATCGAAATCTTTAGTCATGTGCTTGTGGATGTTGTTATAAACATTTTGATTATCTATAGTTTTAATTATATGTCATGTAATGGTATAGTTTTATGCTACTTAAATATTATTTTAACCTACCTAACTTCTATGTATCAGTCTGTCTTAGTCTTACTTTTGAAGAACCCATGTCCTTTAATTTTTTTTCCTTTTCATTTTTGACAAATTAACAAATGAGGGTATCCAAATATAACTTTTTAGTCCAACTTCACTTTTTAACTAAGTTCCCTTTTACCCTTAATGTGAACAAGAGATTTCCTCATAAATAAAAAATTACTGAAGTCCATTCTTAAGTTATATCCATCTTTGAACATCTCAGGTTCAATCATTAGTTATTATGAACACATAACAAATCTTTGTTTCTTCTTGAAATAGAAAAAGATATGTTGAGATATATAGGGTACAATCTAAGGGTCTTATTTGATTAATAATTCCTTCTATTTGCTCTAAATTAAACTCTCTCCTTGTATTTGCTCTTAACTAGCTATTACATTTCTTTATGTAGCTTGGTTTGTTGTATATGTTAATTTCTCACCTACATGCTTGATAATGTCACATCTTTTTCTAAAACAATAAAATGTGAAAATTAGTGATGAAATAACTTTTTAGATTTTGTATACTTAGTGAAATATACATACTCTTTGAATTATTAATGAGTGGAATAATTGAACTCTAATAAGGCCAAGAATTAGGTTATAATTATTAATTAACTTTTTGGCATAAAGGCCTTCTTAAACTTGGATTAAGAAACACAATTACTCAGTGTTTTAGGTTTGAATATAAATGTGATTGATTCATATATATATATATAAACCTTTTTCTTTCATTAATAATCTTCTGTTGCAATTATTTATTACCTTCTATTTGACAGAATATTAACTGTTTTTTCCGCTGCCATATATCGCATGGCCTGTTTATTTATCTGTCAAATAATAAGTTTTTTTCTTCTTCTCTTTTTAAAAAAACTAAAATTAAAAATCTTGCAGCTTTTCTCTGAAAGAAGCATTCACTTGTCATCTCCCCAGATGTAACAGCAGAAGGGCAGCCTGCATGA

mRNA sequence

ATGGGATCAACAACAACAAGCAACCATTATTACAGCCCTTGTGCAGCTTGCAAATTCCTAAGAAGAAAATGCTTAGTAGGCTGTGTTTTTGCACCCTATTTTCCTCCTGAAGAACCCCAAAAATTTGTCAATGTCCACAAGGTGTTTGGAGCGAGTAACGTGGCGAAGCTCTTGAACGAAGTTCTTCCTCATCAACGACAAGATGCCGTCGTTTCGTTGGCCTACGAAGCTGAGGCAAGAATCAGAGATCCTGTTTATGGGTGTGTTGGAGCCATTTCTTTCCTTCAAAAACAGAAGCATTCACTTGTCATCTCCCCAGATGTAACAGCAGAAGGGCAGCCTGCATGA

Coding sequence (CDS)

ATGGGATCAACAACAACAAGCAACCATTATTACAGCCCTTGTGCAGCTTGCAAATTCCTAAGAAGAAAATGCTTAGTAGGCTGTGTTTTTGCACCCTATTTTCCTCCTGAAGAACCCCAAAAATTTGTCAATGTCCACAAGGTGTTTGGAGCGAGTAACGTGGCGAAGCTCTTGAACGAAGTTCTTCCTCATCAACGACAAGATGCCGTCGTTTCGTTGGCCTACGAAGCTGAGGCAAGAATCAGAGATCCTGTTTATGGGTGTGTTGGAGCCATTTCTTTCCTTCAAAAACAGAAGCATTCACTTGTCATCTCCCCAGATGTAACAGCAGAAGGGCAGCCTGCATGA

Protein sequence

MGSTTTSNHYYSPCAACKFLRRKCLVGCVFAPYFPPEEPQKFVNVHKVFGASNVAKLLNEVLPHQRQDAVVSLAYEAEARIRDPVYGCVGAISFLQKQKHSLVISPDVTAEGQPA*

Homology

[Close]

BLAST of Chy12G218470 vs. ExPASy Swiss-Prot
Match: Q9FML4 (Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana OX=3702 GN=LOB PE=1 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 8.4e-44
Identity = 79/98 (80.61%), Postives = 89/98 (90.82%), Query Frame = 0


Query: 5   TTSNHYYSPCAACKFLRRKCLVGCVFAPYFPPEEPQKFVNVHKVFGASNVAKLLNEVLPH 64
           ++SN Y SPCAACKFLRRKC+ GC+FAPYFPPEEP KF NVHK+FGASNV KLLNE+LPH
Sbjct: 3   SSSNSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPH 62

Query: 65  QRQDAVVSLAYEAEARIRDPVYGCVGAISFLQKQKHSL 103
           QR+DAV SLAYEAEAR+RDPVYGCVGAIS+LQ+Q H L
Sbjct: 63  QREDAVNSLAYEAEARVRDPVYGCVGAISYLQRQVHRL 100

[Close]

BLAST of Chy12G218470 vs. ExPASy Swiss-Prot
Match: Q8L8Q3 (LOB domain-containing protein 25 OS=Arabidopsis thaliana OX=3702 GN=LBD25 PE=2 SV=3)

HSP 1 Score: 159.5 bits (402), Expect = 2.4e-38
Identity = 72/92 (78.26%), Postives = 82/92 (89.13%), Query Frame = 0


Query: 7   SNHYYSPCAACKFLRRKCLVGCVFAPYFPPEEPQKFVNVHKVFGASNVAKLLNEVLPHQR 66
           SN+  SPCAACKFLRRKC   CVFAPYFPPEEP KF NVH++FGASNV+K+L+EV PHQR
Sbjct: 33  SNYTNSPCAACKFLRRKCTSDCVFAPYFPPEEPTKFANVHRIFGASNVSKILHEVAPHQR 92

Query: 67  QDAVVSLAYEAEARIRDPVYGCVGAISFLQKQ 99
           +DAV SLAYEAEAR++DPVYGCVGAIS LQ+Q
Sbjct: 93  EDAVNSLAYEAEARLKDPVYGCVGAISVLQRQ 124

[Close]

BLAST of Chy12G218470 vs. ExPASy Swiss-Prot
Match: O04479 (Protein ASYMMETRIC LEAVES 2 OS=Arabidopsis thaliana OX=3702 GN=AS2 PE=1 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 2.9e-36
Identity = 74/104 (71.15%), Postives = 83/104 (79.81%), Query Frame = 0


Query: 1   MGSTTTSNHYYSPCAACKFLRRKCLVGCVFAPYFPPEEPQKFVNVHKVFGASNVAKLLNE 60
           M S++T+    SPCAACKFLRRKC   CVFAPYFPP++PQKF NVHKVFGASNV KLLNE
Sbjct: 1   MASSSTN----SPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNE 60

Query: 61  VLPHQRQDAVVSLAYEAEARIRDPVYGCVGAISFLQKQKHSLVI 105
           + P QR+DAV SLAYEA+ R+RDPVYGCVG IS LQ Q   L I
Sbjct: 61  LHPSQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQI 100

[Close]

BLAST of Chy12G218470 vs. ExPASy Swiss-Prot
Match: Q32SG3 (LOB domain-containing protein 6 OS=Zea mays OX=4577 GN=LBD6 PE=1 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.2e-34
Identity = 68/91 (74.73%), Postives = 75/91 (82.42%), Query Frame = 0


Query: 12  SPCAACKFLRRKCLVGCVFAPYFPPEEPQKFVNVHKVFGASNVAKLLNEVLPHQRQDAVV 71
           SPCAACKFLRRKC   CVFAPYFPP+ PQKFV+VH+VFGASNV KLLNE+ P QR+DAV 
Sbjct: 32  SPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPFQREDAVN 91

Query: 72  SLAYEAEARIRDPVYGCVGAISFLQKQKHSL 103
           SLAYEA+ R+RDPVYGCVG IS LQ     L
Sbjct: 92  SLAYEADMRLRDPVYGCVGVISILQHNLRQL 122

[Close]

BLAST of Chy12G218470 vs. ExPASy Swiss-Prot
Match: A2WXT0 (LOB domain-containing protein 6 OS=Oryza sativa subsp. indica OX=39946 GN=LBD6 PE=3 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.6e-34
Identity = 67/91 (73.63%), Postives = 76/91 (83.52%), Query Frame = 0


Query: 12  SPCAACKFLRRKCLVGCVFAPYFPPEEPQKFVNVHKVFGASNVAKLLNEVLPHQRQDAVV 71
           SPCAACKFLRRKC   CVFAPYFPP+ PQKFV+VH+VFGASNV KLLNE+ P+QR+DAV 
Sbjct: 37  SPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDAVN 96

Query: 72  SLAYEAEARIRDPVYGCVGAISFLQKQKHSL 103
           SLAYEA+ R+RDPVYGCV  IS LQ+    L
Sbjct: 97  SLAYEADMRLRDPVYGCVAIISILQRNLRQL 127

[Close]

BLAST of Chy12G218470 vs. ExPASy TrEMBL
Match: A0A0A0LTL0 (LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G046305 PE=3 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 1.1e-49
Identity = 97/102 (95.10%), Postives = 97/102 (95.10%), Query Frame = 0


Query: 1   MGSTTTSNHYYSPCAACKFLRRKCLVGCVFAPYFPPEEPQKFVNVHKVFGASNVAKLLNE 60
           MGSTTTSNHYYSPCAACKFLRRKCL GCVFAPYFPPEEPQKF NVHKVFGASNVAKLLNE
Sbjct: 1   MGSTTTSNHYYSPCAACKFLRRKCLAGCVFAPYFPPEEPQKFANVHKVFGASNVAKLLNE 60

Query: 61  VLPHQRQDAVVSLAYEAEARIRDPVYGCVGAISFLQKQKHSL 103
           VLPHQRQDAVVSLAYEAEARIRDPVYGCVGAISFLQKQ   L
Sbjct: 61  VLPHQRQDAVVSLAYEAEARIRDPVYGCVGAISFLQKQVQRL 102

[Close]

BLAST of Chy12G218470 vs. ExPASy TrEMBL
Match: A0A5D3BJ87 (Elongated petiolule 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G003860 PE=3 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 3.1e-49
Identity = 96/102 (94.12%), Postives = 96/102 (94.12%), Query Frame = 0


Query: 1   MGSTTTSNHYYSPCAACKFLRRKCLVGCVFAPYFPPEEPQKFVNVHKVFGASNVAKLLNE 60
           MGSTTT NHYYSPCAACKFLRRKCL GCVFAPYFPPEEPQKF NVHKVFGASNVAKLLNE
Sbjct: 1   MGSTTTGNHYYSPCAACKFLRRKCLAGCVFAPYFPPEEPQKFANVHKVFGASNVAKLLNE 60

Query: 61  VLPHQRQDAVVSLAYEAEARIRDPVYGCVGAISFLQKQKHSL 103
           VLPHQRQDAVVSLAYEAEARIRDPVYGCVGAISFLQKQ   L
Sbjct: 61  VLPHQRQDAVVSLAYEAEARIRDPVYGCVGAISFLQKQVQRL 102

[Close]

BLAST of Chy12G218470 vs. ExPASy TrEMBL
Match: A0A6J1EDS7 (protein LATERAL ORGAN BOUNDARIES-like OS=Cucurbita moschata OX=3662 GN=LOC111431618 PE=3 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 2.7e-45
Identity = 90/103 (87.38%), Postives = 94/103 (91.26%), Query Frame = 0


Query: 1   MGSTTT-SNHYYSPCAACKFLRRKCLVGCVFAPYFPPEEPQKFVNVHKVFGASNVAKLLN 60
           MGS  T +NHYYSPCAACKFLRRKC+ GC+FAPYFPPEEPQKF NVHKVFGASNVAKLLN
Sbjct: 3   MGSLATGTNHYYSPCAACKFLRRKCIAGCIFAPYFPPEEPQKFANVHKVFGASNVAKLLN 62

Query: 61  EVLPHQRQDAVVSLAYEAEARIRDPVYGCVGAISFLQKQKHSL 103
           EVLPHQRQDAVVSLAY+AEARIRDPVYGCV AISFLQKQ   L
Sbjct: 63  EVLPHQRQDAVVSLAYQAEARIRDPVYGCVAAISFLQKQVQRL 105

[Close]

BLAST of Chy12G218470 vs. ExPASy TrEMBL
Match: A0A6J1KEE2 (protein LATERAL ORGAN BOUNDARIES-like OS=Cucurbita maxima OX=3661 GN=LOC111495065 PE=3 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 4.6e-45
Identity = 90/103 (87.38%), Postives = 94/103 (91.26%), Query Frame = 0


Query: 1   MGSTTT-SNHYYSPCAACKFLRRKCLVGCVFAPYFPPEEPQKFVNVHKVFGASNVAKLLN 60
           MGS  T +NHYYSPCAACKFLRRKC+ GC+FAPYFPPEEPQKF NVHKVFGASNVAKLLN
Sbjct: 3   MGSLATGTNHYYSPCAACKFLRRKCISGCIFAPYFPPEEPQKFANVHKVFGASNVAKLLN 62

Query: 61  EVLPHQRQDAVVSLAYEAEARIRDPVYGCVGAISFLQKQKHSL 103
           EVLPHQRQDAVVSLAY+AEARIRDPVYGCV AISFLQKQ   L
Sbjct: 63  EVLPHQRQDAVVSLAYQAEARIRDPVYGCVAAISFLQKQVQRL 105

[Close]

BLAST of Chy12G218470 vs. ExPASy TrEMBL
Match: A0A6J1K206 (protein LATERAL ORGAN BOUNDARIES-like OS=Cucurbita maxima OX=3661 GN=LOC111490317 PE=3 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 7.8e-45
Identity = 87/100 (87.00%), Postives = 93/100 (93.00%), Query Frame = 0


Query: 3   STTTSNHYYSPCAACKFLRRKCLVGCVFAPYFPPEEPQKFVNVHKVFGASNVAKLLNEVL 62
           S T ++HYYSPCAACKFLRRKC+ GCV+APYFPPE+PQKF NVHKVFGASNVAKLLNEVL
Sbjct: 5   SRTETSHYYSPCAACKFLRRKCIAGCVYAPYFPPEDPQKFANVHKVFGASNVAKLLNEVL 64

Query: 63  PHQRQDAVVSLAYEAEARIRDPVYGCVGAISFLQKQKHSL 103
           PHQRQDAVVSLAYEAEARI+DPVYGCVGAISFLQKQ   L
Sbjct: 65  PHQRQDAVVSLAYEAEARIKDPVYGCVGAISFLQKQVQRL 104

[Close]

BLAST of Chy12G218470 vs. NCBI nr
Match: KGN64334.1 (hypothetical protein Csa_013854 [Cucumis sativus])

HSP 1 Score: 204 bits (519), Expect = 4.97e-65
Identity = 97/102 (95.10%), Postives = 97/102 (95.10%), Query Frame = 0


Query: 1   MGSTTTSNHYYSPCAACKFLRRKCLVGCVFAPYFPPEEPQKFVNVHKVFGASNVAKLLNE 60
           MGSTTTSNHYYSPCAACKFLRRKCL GCVFAPYFPPEEPQKF NVHKVFGASNVAKLLNE
Sbjct: 1   MGSTTTSNHYYSPCAACKFLRRKCLAGCVFAPYFPPEEPQKFANVHKVFGASNVAKLLNE 60

Query: 61  VLPHQRQDAVVSLAYEAEARIRDPVYGCVGAISFLQKQKHSL 102
           VLPHQRQDAVVSLAYEAEARIRDPVYGCVGAISFLQKQ   L
Sbjct: 61  VLPHQRQDAVVSLAYEAEARIRDPVYGCVGAISFLQKQVQRL 102

[Close]

BLAST of Chy12G218470 vs. NCBI nr
Match: KAA0055253.1 (elongated petiolule 1 [Cucumis melo var. makuwa] >TYJ99177.1 elongated petiolule 1 [Cucumis melo var. makuwa])

HSP 1 Score: 202 bits (515), Expect = 2.09e-64
Identity = 96/102 (94.12%), Postives = 96/102 (94.12%), Query Frame = 0


Query: 1   MGSTTTSNHYYSPCAACKFLRRKCLVGCVFAPYFPPEEPQKFVNVHKVFGASNVAKLLNE 60
           MGSTTT NHYYSPCAACKFLRRKCL GCVFAPYFPPEEPQKF NVHKVFGASNVAKLLNE
Sbjct: 1   MGSTTTGNHYYSPCAACKFLRRKCLAGCVFAPYFPPEEPQKFANVHKVFGASNVAKLLNE 60

Query: 61  VLPHQRQDAVVSLAYEAEARIRDPVYGCVGAISFLQKQKHSL 102
           VLPHQRQDAVVSLAYEAEARIRDPVYGCVGAISFLQKQ   L
Sbjct: 61  VLPHQRQDAVVSLAYEAEARIRDPVYGCVGAISFLQKQVQRL 102

[Close]

BLAST of Chy12G218470 vs. NCBI nr
Match: XP_038895915.1 (protein LATERAL ORGAN BOUNDARIES-like [Benincasa hispida])

HSP 1 Score: 195 bits (495), Expect = 2.39e-61
Identity = 94/103 (91.26%), Postives = 96/103 (93.20%), Query Frame = 0


Query: 1   MGSTTTSN-HYYSPCAACKFLRRKCLVGCVFAPYFPPEEPQKFVNVHKVFGASNVAKLLN 60
           MGSTTTSN HYYSPCAACKFLRRKCL  CVFAPYFPPE+PQKF NVHKVFGASNVAKLLN
Sbjct: 1   MGSTTTSNSHYYSPCAACKFLRRKCLAACVFAPYFPPEDPQKFANVHKVFGASNVAKLLN 60

Query: 61  EVLPHQRQDAVVSLAYEAEARIRDPVYGCVGAISFLQKQKHSL 102
           +VLPHQRQDAVVSLAYEAEARIRDPVYGCVGAISFLQKQ   L
Sbjct: 61  DVLPHQRQDAVVSLAYEAEARIRDPVYGCVGAISFLQKQVQRL 103

[Close]

BLAST of Chy12G218470 vs. NCBI nr
Match: XP_022924080.1 (protein LATERAL ORGAN BOUNDARIES-like [Cucurbita moschata] >KAG6584203.1 Protein LATERAL ORGAN BOUNDARIES, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019799.1 Protein LATERAL ORGAN BOUNDARIES, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 189 bits (481), Expect = 2.43e-59
Identity = 90/103 (87.38%), Postives = 94/103 (91.26%), Query Frame = 0


Query: 1   MGSTTT-SNHYYSPCAACKFLRRKCLVGCVFAPYFPPEEPQKFVNVHKVFGASNVAKLLN 60
           MGS  T +NHYYSPCAACKFLRRKC+ GC+FAPYFPPEEPQKF NVHKVFGASNVAKLLN
Sbjct: 3   MGSLATGTNHYYSPCAACKFLRRKCIAGCIFAPYFPPEEPQKFANVHKVFGASNVAKLLN 62

Query: 61  EVLPHQRQDAVVSLAYEAEARIRDPVYGCVGAISFLQKQKHSL 102
           EVLPHQRQDAVVSLAY+AEARIRDPVYGCV AISFLQKQ   L
Sbjct: 63  EVLPHQRQDAVVSLAYQAEARIRDPVYGCVAAISFLQKQVQRL 105

[Close]

BLAST of Chy12G218470 vs. NCBI nr
Match: XP_023000702.1 (protein LATERAL ORGAN BOUNDARIES-like [Cucurbita maxima])

HSP 1 Score: 189 bits (479), Expect = 4.89e-59
Identity = 90/103 (87.38%), Postives = 94/103 (91.26%), Query Frame = 0


Query: 1   MGSTTT-SNHYYSPCAACKFLRRKCLVGCVFAPYFPPEEPQKFVNVHKVFGASNVAKLLN 60
           MGS  T +NHYYSPCAACKFLRRKC+ GC+FAPYFPPEEPQKF NVHKVFGASNVAKLLN
Sbjct: 3   MGSLATGTNHYYSPCAACKFLRRKCISGCIFAPYFPPEEPQKFANVHKVFGASNVAKLLN 62

Query: 61  EVLPHQRQDAVVSLAYEAEARIRDPVYGCVGAISFLQKQKHSL 102
           EVLPHQRQDAVVSLAY+AEARIRDPVYGCV AISFLQKQ   L
Sbjct: 63  EVLPHQRQDAVVSLAYQAEARIRDPVYGCVAAISFLQKQVQRL 105

[Close]

BLAST of Chy12G218470 vs. TAIR 10
Match: AT5G63090.2 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 177.6 bits (449), Expect = 5.9e-45
Identity = 79/98 (80.61%), Postives = 89/98 (90.82%), Query Frame = 0


Query: 5   TTSNHYYSPCAACKFLRRKCLVGCVFAPYFPPEEPQKFVNVHKVFGASNVAKLLNEVLPH 64
           ++SN Y SPCAACKFLRRKC+ GC+FAPYFPPEEP KF NVHK+FGASNV KLLNE+LPH
Sbjct: 3   SSSNSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPH 62

Query: 65  QRQDAVVSLAYEAEARIRDPVYGCVGAISFLQKQKHSL 103
           QR+DAV SLAYEAEAR+RDPVYGCVGAIS+LQ+Q H L
Sbjct: 63  QREDAVNSLAYEAEARVRDPVYGCVGAISYLQRQVHRL 100

[Close]

BLAST of Chy12G218470 vs. TAIR 10
Match: AT5G63090.3 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 177.6 bits (449), Expect = 5.9e-45
Identity = 79/98 (80.61%), Postives = 89/98 (90.82%), Query Frame = 0


Query: 5   TTSNHYYSPCAACKFLRRKCLVGCVFAPYFPPEEPQKFVNVHKVFGASNVAKLLNEVLPH 64
           ++SN Y SPCAACKFLRRKC+ GC+FAPYFPPEEP KF NVHK+FGASNV KLLNE+LPH
Sbjct: 3   SSSNSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPH 62

Query: 65  QRQDAVVSLAYEAEARIRDPVYGCVGAISFLQKQKHSL 103
           QR+DAV SLAYEAEAR+RDPVYGCVGAIS+LQ+Q H L
Sbjct: 63  QREDAVNSLAYEAEARVRDPVYGCVGAISYLQRQVHRL 100

[Close]

BLAST of Chy12G218470 vs. TAIR 10
Match: AT5G63090.1 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 177.6 bits (449), Expect = 5.9e-45
Identity = 79/98 (80.61%), Postives = 89/98 (90.82%), Query Frame = 0


Query: 5   TTSNHYYSPCAACKFLRRKCLVGCVFAPYFPPEEPQKFVNVHKVFGASNVAKLLNEVLPH 64
           ++SN Y SPCAACKFLRRKC+ GC+FAPYFPPEEP KF NVHK+FGASNV KLLNE+LPH
Sbjct: 3   SSSNSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPH 62

Query: 65  QRQDAVVSLAYEAEARIRDPVYGCVGAISFLQKQKHSL 103
           QR+DAV SLAYEAEAR+RDPVYGCVGAIS+LQ+Q H L
Sbjct: 63  QREDAVNSLAYEAEARVRDPVYGCVGAISYLQRQVHRL 100

[Close]

BLAST of Chy12G218470 vs. TAIR 10
Match: AT5G63090.4 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 177.6 bits (449), Expect = 5.9e-45
Identity = 79/98 (80.61%), Postives = 89/98 (90.82%), Query Frame = 0


Query: 5   TTSNHYYSPCAACKFLRRKCLVGCVFAPYFPPEEPQKFVNVHKVFGASNVAKLLNEVLPH 64
           ++SN Y SPCAACKFLRRKC+ GC+FAPYFPPEEP KF NVHK+FGASNV KLLNE+LPH
Sbjct: 3   SSSNSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPH 62

Query: 65  QRQDAVVSLAYEAEARIRDPVYGCVGAISFLQKQKHSL 103
           QR+DAV SLAYEAEAR+RDPVYGCVGAIS+LQ+Q H L
Sbjct: 63  QREDAVNSLAYEAEARVRDPVYGCVGAISYLQRQVHRL 100

[Close]

BLAST of Chy12G218470 vs. TAIR 10
Match: AT3G27650.1 (LOB domain-containing protein 25 )

HSP 1 Score: 159.5 bits (402), Expect = 1.7e-39
Identity = 72/92 (78.26%), Postives = 82/92 (89.13%), Query Frame = 0


Query: 7   SNHYYSPCAACKFLRRKCLVGCVFAPYFPPEEPQKFVNVHKVFGASNVAKLLNEVLPHQR 66
           SN+  SPCAACKFLRRKC   CVFAPYFPPEEP KF NVH++FGASNV+K+L+EV PHQR
Sbjct: 33  SNYTNSPCAACKFLRRKCTSDCVFAPYFPPEEPTKFANVHRIFGASNVSKILHEVAPHQR 92

Query: 67  QDAVVSLAYEAEARIRDPVYGCVGAISFLQKQ 99
           +DAV SLAYEAEAR++DPVYGCVGAIS LQ+Q
Sbjct: 93  EDAVNSLAYEAEARLKDPVYGCVGAISVLQRQ 124

The following BLAST results are available for this feature:

BLAST of Chy12G218470 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FML4	8.4e-44	80.61	Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana OX=3702 GN=LOB PE=1 SV=...	[more]
Q8L8Q3	2.4e-38	78.26	LOB domain-containing protein 25 OS=Arabidopsis thaliana OX=3702 GN=LBD25 PE=2 S...	[more]
O04479	2.9e-36	71.15	Protein ASYMMETRIC LEAVES 2 OS=Arabidopsis thaliana OX=3702 GN=AS2 PE=1 SV=1	[more]
Q32SG3	1.2e-34	74.73	LOB domain-containing protein 6 OS=Zea mays OX=4577 GN=LBD6 PE=1 SV=1	[more]
A2WXT0	1.6e-34	73.63	LOB domain-containing protein 6 OS=Oryza sativa subsp. indica OX=39946 GN=LBD6 P...	[more]

BLAST of Chy12G218470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTL0	1.1e-49	95.10	LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G046305 PE=3 SV...	[more]
A0A5D3BJ87	3.1e-49	94.12	Elongated petiolule 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold24...	[more]
A0A6J1EDS7	2.7e-45	87.38	protein LATERAL ORGAN BOUNDARIES-like OS=Cucurbita moschata OX=3662 GN=LOC111431...	[more]
A0A6J1KEE2	4.6e-45	87.38	protein LATERAL ORGAN BOUNDARIES-like OS=Cucurbita maxima OX=3661 GN=LOC11149506...	[more]
A0A6J1K206	7.8e-45	87.00	protein LATERAL ORGAN BOUNDARIES-like OS=Cucurbita maxima OX=3661 GN=LOC11149031...	[more]

BLAST of Chy12G218470 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64334.1	4.97e-65	95.10	hypothetical protein Csa_013854 [Cucumis sativus]	[more]
KAA0055253.1	2.09e-64	94.12	elongated petiolule 1 [Cucumis melo var. makuwa] >TYJ99177.1 elongated petiolule...	[more]
XP_038895915.1	2.39e-61	91.26	protein LATERAL ORGAN BOUNDARIES-like [Benincasa hispida]	[more]
XP_022924080.1	2.43e-59	87.38	protein LATERAL ORGAN BOUNDARIES-like [Cucurbita moschata] >KAG6584203.1 Protein...	[more]
XP_023000702.1	4.89e-59	87.38	protein LATERAL ORGAN BOUNDARIES-like [Cucurbita maxima]	[more]

BLAST of Chy12G218470 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G63090.2	5.9e-45	80.61	Lateral organ boundaries (LOB) domain family protein	[more]
AT5G63090.3	5.9e-45	80.61	Lateral organ boundaries (LOB) domain family protein	[more]
AT5G63090.1	5.9e-45	80.61	Lateral organ boundaries (LOB) domain family protein	[more]
AT5G63090.4	5.9e-45	80.61	Lateral organ boundaries (LOB) domain family protein	[more]
AT3G27650.1	1.7e-39	78.26	LOB domain-containing protein 25	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 13..101 e-value: 8.5E-39 score: 132.1
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 12..113 score: 23.810677
None	No IPR available	PANTHER	PTHR31301	LOB DOMAIN-CONTAINING PROTEIN 4-RELATED	coord: 6..102
None	No IPR available	PANTHER	PTHR31301:SF91	PROTEIN LATERAL ORGAN BOUNDARIES	coord: 6..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy12G218470.1	Chy12G218470.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010199	organ boundary specification between lateral organs and the meristem
molecular_function	GO:0000976	transcription cis-regulatory region binding