Chy12G217490 (gene) Cucumber (hystrix) v1

Overview
NameChy12G217490
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionProtein TAPETUM DETERMINANT 1
LocationchrH12: 16436199 .. 16440125 (-)
RNA-Seq ExpressionChy12G217490
SyntenyChy12G217490
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACTCCTTCTCCCATACTGGTGAAGAAGCTGCTGTTGCTACTTCACTCATGTTTTACTTCATAACTAGATTTGGTAGGGGGAGAAATTAAATTAACGAAAAAGTGTAACAAAATGAAGATTTATATTGTATTATTTTTGAAGAAGCAGAAAAAGAATAATAAATTGTAAGGTATGAGAAAGAGAAAAGTCTTTAAATATTTTGGTGAAGATATTATTTATTTTCTCATGACTGACCTTAATAATTCTTGAATGAACACTCAACCACTACTCTTCTCATTCCGACATATAAAATAAATAAAAATGTACCAGTCTCCAATTTAACATCACAATGTTCATCCAAAGAAAAGAAAAGCAGTTGCTTCAAAAGAAAGAAAGAAACATAAAACACACAAAAACACAGTACAAACTAGACAGCAAAAGCAGGACAAAAATTTATATATTCTAAATAAAATCATTTTTAAGCAAAGTTCAAATAAAGAAGTAGTAAAACAAATTACGTGGAAAAGTGAACAACTATATTTTATATGTTAACACAATTCCATGAAAAAGAAAAATTGGCCATTGGTTGTGCCAAAAGAGAGGTTGCTGAAGTGTGGTTTGGACATCAAGTTGTCCACCATTTACTCAACCTTAATCTTAATTTTAATTTTAATTTACACCATTTTATTCCTCTAGTTTATGTATTATGGTTCAATAAATAGTAAGTCTATATTCCAAATGTTTGAAATTGCTTAAATTCTCCCATTACTTACTGCCTAAACTTTAAAATGTGCAGTGTTTTTAGAGTAAATAATTGAAGTATTAAAAAGAGAAGAAACATGGGAATATGTCACAGATAGACTCACAGCTAAAAATATAATTTTTTTTTTTTAAGAAGAAAAAATGGAAAATTAAGAAGGGAGTGGAAATGAAATAAAATGAAATAAAATTAAAAAAAATAATAATAAAAGGTAATAATGGAAGAGGGCCCAGAGGGATGACACGTAATGTGAAAAAAAGAAAAATCATTCGCCTGCTCCACTGAGGGAATGAAGAATTTAAAAGAAATATTTAATATTAAGTTTGTTATAAATGAATAAATAAAATGGAATTAATAGGCTAATAATCACATCCAATCCAATGGAAGCCCCAAGGCGGGTAAATATTGCACACGTGACGGTTACCTTCCCCCACTACAATACTACTCTATATACCTTCTCTCTCACTTCTTTTATTTCCCCATTTATTTTCTTTTTTAACCCCTTTTCTTTTCTTATTTTTTGGCCCCCTCCCTTCTTCTTCTTCCCTCCTCCGACACTTCGCCGCCCTTCGCCCCCCTTCGCCCCCGCCTCTGCTTTCACTCTCCTCTTCTAGGCTTCTACTTTTCTCCATTCCTTATCCTTTCCTCTCCTTCTGCACCATTGTGTATGTCTATGCTTTTTTTCCCTTTCATTTAATGCCTTCAAACAAAACGTAGAGTCTCATGATTTTCCCTTTTTGAGGATCCTGGTGTTTTGTTATTTACAGGTATCCACGATTTCCCTTCTGTCATTTTTGTCTCTCCTCTACTCAACTTTCCTGCTCCATTTTCATCCTGTACGTACTCTCCATCTTTTCCTTTTTTCTGTTTCACTTTTTCTGTCTTTCTCTCCCTCTCGCATGCTTTTTAATTTCTCTCTACTCTTTTCCCTTTTACTCTCTTTCCTTCTTCTTCTTCTTCCCTAACTGTCACTTCTCTTGCACCATAACACGCTTCGTTTTTTTTTTCTTCTTCTTCCATGTCTTTGTATTCCCTCTTTTTCTTACACGGTTTCTGCGTTGTCGTTTCATTAATTTCGCCTACACCTACTGGTGGGGGTAACTACTAACTATACCTCTGATTCTGACCATTTCTCAGCCTGTGTGACTCTTTATGGCGATGCTTCTTCCTTTAAAGTCAATCAACTTCTCTCTGTATATCTCTTGCTTTCGACGGCTCTTCTTTTCTTTTTTGACTCCTTGTGTTTTCAAATCCCATTTTTCCTCTCTGATGATGTGATGTTTTCATTCTTTTCCCAACGCAGGTTCTTTAGTTTCTGAAGTTTCTTCTCTCTTATCAAGGATCGGTTTCGCCTTCCGATTCCCATTTCTTTCCTTTCACTGTACAACAGTTCTTTCCGGAGTTTACAGGATTCTCTGTTATAAATGATGAAAGAACTGTCTACTACTACTACTACTACTCGGCGTGTATCGCTGATTTTCGCTTTGGTTTTCTTCATCTTCTTTTTCGTATCTGCTATTCTTACAGGTCTGTATCATCTCTCGCACTCCGTTCTCCGTTTTGTTTTCAATTTGTTTTTACTGTGTGTTTTGATTTGTTATACTTTTACTACGTCGCTTCTCTCTCTCTCTCTGAGTTTACCTTTTGTTTTGTCTTCTTCTTCCTGTATATTTTATTTGTTCCTCAATCATTGTTCTCTCCTTTGTCTTTTTCTGCATCGTATAGAAACAAAGATATTATTCTTCTTCTACTACTTTTTTTCACATCATTTTCTTCCTTCATGATTGCAGATCCGAATATTATGGATTCCGGTCCACCAAGTCTTCTTCCGTTGGATTTGAATACCACAACAGTTGCTCCTCATCGGAAGCTTCTTCTCACTAGTAAGTTTACGAAAATCTGATTTAATCGTGTATTCATAAATGTTATACCAGCAGATTCGTTTTTCGGAGGAATCGTTATTCTTCTCTGAGTTTGTTGTTGGTTTTTGTTTTAAATGTCTGTTTGATTTTGGAATTATGATCTTGGGGATGATGGGAGGGATTGAAAGATTGGGTACTCAATTGCATATATAGTTGATTTGTTGTCAGAATTGCACGCCCATCCATTCTTAGTAATGAAGCTAAGGTGCACCTTTTTCTATGTAGCTTTCAACTCCTTCTTTCTGTTCTTTAACCTATATGGCCTTTCTGTAGCTGATTTTGGAGAAATCTTCTTTATTTGATCCCATATACCCACCAGCATTTCTTCCTTTTTCTGTCCACAATTCATTGATTACATAAAAGCAACCTTTGGCCCGAAAGCGTGGAGCATTATAATGCCTTTTTCAGTTTTAGCTTTTGAGCTTCTAATTGAATTCATTGCTTTGACATAAAAGCTCTACCAGTGTGTGTGTATTAAATTATATCTAACGATTAGCTAATGCGTGGACTCTCTTTAGTGGGATTGTTGAGGGTACAGTTTTATTAGTTTTAAACTTTCATATGATTGTAATGGGCGCAATTTTTAATTTTAAATTTTGTTATGCCTAACCAAATGGATTGAATTTAGATAATGGTGCCATGGGATTTTTCTTTTTCATACTCTCTTTAATCTTTACTTTGTCTTTGAATTTGCTTTATCTTTTATAATTGATTATTAATGCTTTGAACACAACTTTTATGACTTCCAGAAAGTGTAGTTTGTGTGTCTGTAGTTTTTTTTCCATTGGGTGGGTCGATATTTATTTATAGGAGTAATGTTTGCACGTGGGTGGTGCCTTCAACAATGATCCAATATACGATGCCAACAAATGACGTCGACCTGTTTGCTTCTTTATTTGAATATGTGCTTTTTAGGGGAAGCAACAATTGAGGAACCAACCAGAATTTGGGGTGAAAAGTGTACAAAATCAGACATTGTGATTAACCAAGGCCCCACTGCTCCACTTCCAACTGGTATCCCCACCTACACCGTGGAAGTGGTGAACGCTTGTGTCACTGGATGTGAGATTTATGGTATTCATTTCAAATGCGGTTGGTTTAGCTCTGCTCACCTCATCAATCCTAGAGTCTTTAAGCGTCTACGTTATGACGACTGTCTCGTGAACGACGGCAAACCTCTTGTCTACGGCGGTACACTCTCATTTCAATATGCAAACACTTATCCTTACCCACTTTCAGTCTCCTCAGTTCTATGCATGTGA

mRNA sequence

ATGGACTCCTTCTCCCATACTGGTGAAGAAGCTGCTGTTGCTACTTCACTCATGTTTTACTTCATAACTAGATTTGGTATCCACGATTTCCCTTCTGTCATTTTTGTCTCTCCTCTACTCAACTTTCCTGCTCCATTTTCATCCTATCCGAATATTATGGATTCCGGTCCACCAAGTCTTCTTCCGTTGGATTTGAATACCACAACAGTTGCTCCTCATCGGAAGCTTCTTCTCACTAGGGAAGCAACAATTGAGGAACCAACCAGAATTTGGGGTGAAAAGTGTACAAAATCAGACATTGTGATTAACCAAGGCCCCACTGCTCCACTTCCAACTGGTATCCCCACCTACACCGTGGAAGTGGTGAACGCTTGTGTCACTGGATGTGAGATTTATGGTATTCATTTCAAATGCGGTTGGTTTAGCTCTGCTCACCTCATCAATCCTAGAGTCTTTAAGCGTCTACGTTATGACGACTGTCTCGTGAACGACGGCAAACCTCTTGTCTACGGCGGTACACTCTCATTTCAATATGCAAACACTTATCCTTACCCACTTTCAGTCTCCTCAGTTCTATGCATGTGA

Coding sequence (CDS)

ATGGACTCCTTCTCCCATACTGGTGAAGAAGCTGCTGTTGCTACTTCACTCATGTTTTACTTCATAACTAGATTTGGTATCCACGATTTCCCTTCTGTCATTTTTGTCTCTCCTCTACTCAACTTTCCTGCTCCATTTTCATCCTATCCGAATATTATGGATTCCGGTCCACCAAGTCTTCTTCCGTTGGATTTGAATACCACAACAGTTGCTCCTCATCGGAAGCTTCTTCTCACTAGGGAAGCAACAATTGAGGAACCAACCAGAATTTGGGGTGAAAAGTGTACAAAATCAGACATTGTGATTAACCAAGGCCCCACTGCTCCACTTCCAACTGGTATCCCCACCTACACCGTGGAAGTGGTGAACGCTTGTGTCACTGGATGTGAGATTTATGGTATTCATTTCAAATGCGGTTGGTTTAGCTCTGCTCACCTCATCAATCCTAGAGTCTTTAAGCGTCTACGTTATGACGACTGTCTCGTGAACGACGGCAAACCTCTTGTCTACGGCGGTACACTCTCATTTCAATATGCAAACACTTATCCTTACCCACTTTCAGTCTCCTCAGTTCTATGCATGTGA

Protein sequence

MDSFSHTGEEAAVATSLMFYFITRFGIHDFPSVIFVSPLLNFPAPFSSYPNIMDSGPPSLLPLDLNTTTVAPHRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVLCM*
Homology
[Close]
BLAST of Chy12G217490 vs. ExPASy Swiss-Prot
Match: Q6TLJ2 (Protein TAPETUM DETERMINANT 1 OS=Arabidopsis thaliana OX=3702 GN=TPD1 PE=1 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 2.5e-40
Identity = 85/140 (60.71%), Postives = 99/140 (70.71%), Query Frame = 0 

Query: 63  LDL-NTTTVAP---HRKLLLTREATIE-----EPTRIWGEKCTKSDIVINQGPTAPLPTG 122
           LDL  TTT +P   HRK+LL    T +     EP RI GEKC  +DIV+NQ  T P+P G
Sbjct: 37  LDLTKTTTSSPSISHRKMLLLSPGTGKTERSVEPERI-GEKCKSTDIVVNQAVTEPMPNG 96

Query: 123 IPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGT 182
           IP Y VE+ N C++GC I  IH  CGWFSSA LINPRVFKR+ YDDCLVN+GKPL +G T
Sbjct: 97  IPGYMVEITNQCMSGCIISRIHINCGWFSSAKLINPRVFKRIHYDDCLVNNGKPLPFGST 156

Query: 183 LSFQYANTYPYPLSVSSVLC 194
           LSF YANT+PY LSV+ V C
Sbjct: 157 LSFHYANTFPYHLSVAFVTC 175

[Close]
BLAST of Chy12G217490 vs. ExPASy Swiss-Prot
Match: Q1G3T1 (TPD1 protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=TDL1 PE=2 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 4.0e-38
Identity = 75/131 (57.25%), Postives = 96/131 (73.28%), Query Frame = 0 

Query: 63  LDLNTTTVAPHRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVV 122
           + +N    A  RKLLL+ +  I + T   G+ C+K DIV+ QG T PLP+G+P+YTVE+ 
Sbjct: 50  VSINENRTALSRKLLLSPD--IGDGTNRIGQDCSKDDIVLFQGSTNPLPSGVPSYTVEIF 109

Query: 123 NACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQYANTY 182
           N+CV+ C I  IH  CGWFSS  L+NPRVF+RL YDDCLVNDG+PL  G +LSFQYAN++
Sbjct: 110 NSCVSDCNIAEIHVSCGWFSSVRLVNPRVFRRLDYDDCLVNDGQPLGPGQSLSFQYANSF 169

Query: 183 PYPLSVSSVLC 194
            YPLSV+SV C
Sbjct: 170 SYPLSVASVSC 178

[Close]
BLAST of Chy12G217490 vs. ExPASy Swiss-Prot
Match: Q2QR54 (TPD1 protein homolog 1A OS=Oryza sativa subsp. japonica OX=39947 GN=TDL1A PE=1 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.5e-29
Identity = 57/102 (55.88%), Postives = 74/102 (72.55%), Query Frame = 0 

Query: 99  DIVINQGPTAPLPTGIPTYTVEVVNACVTG------CEIYGIHFKCGWFSSAHLINPRVF 158
           DI I QG   PLP+G+P YTV+V+N C  G      C I GIH +CGWFSS  L++PRVF
Sbjct: 119 DIAIYQGRATPLPSGVPAYTVDVMNRCAGGGGGDEECAIAGIHVRCGWFSSVSLVDPRVF 178

Query: 159 KRLRYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVLCM 195
           +RL +DDCL+NDG+PL+ G T+SF+Y N++PY LSVS   C+
Sbjct: 179 RRLGHDDCLLNDGRPLLAGETVSFEYTNSFPYKLSVSVATCV 220

[Close]
BLAST of Chy12G217490 vs. ExPASy Swiss-Prot
Match: Q8S6P9 (TPD1 protein homolog 1B OS=Oryza sativa subsp. japonica OX=39947 GN=TDL1B PE=2 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 6.1e-23
Identity = 45/105 (42.86%), Postives = 72/105 (68.57%), Query Frame = 0 

Query: 89  RIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLIN 148
           R+  + C++ ++V+ Q     LP+GIPTY+VE++N C T C +Y +H  CG F+SA L++
Sbjct: 65  RMQPDSCSEQNVVVYQNNAEHLPSGIPTYSVEIINVC-TACTVYDVHISCGEFASAELVD 124

Query: 149 PRVFKRLRYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVLC 194
           P  F+R+ ++DCLV  G  L     +SFQY+N++ YPL+V++V C
Sbjct: 125 PSQFQRIGFNDCLVKGGGRLGPSEAVSFQYSNSFAYPLAVANVAC 168

[Close]
BLAST of Chy12G217490 vs. ExPASy Swiss-Prot
Match: A8MS78 (Uncharacterized protein At1g05835 OS=Arabidopsis thaliana OX=3702 GN=At1g05835 PE=2 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 4.4e-05
Identity = 28/72 (38.89%), Postives = 40/72 (55.56%), Query Frame = 0 

Query: 117 YTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYD--DCLVNDGKPLVYGGTL 176
           + VEV+N C   C I  +  KC  F  + L++P   + L     +C+VNDG PL    TL
Sbjct: 48  FRVEVMNKCPM-CPIINLRLKCQGFPQS-LVDPTFLRVLSSSAGNCVVNDGLPLSPMQTL 107

Query: 177 SFQYANTYPYPL 187
           SF Y+NT+ + L
Sbjct: 108 SFNYSNTHQFAL 117

[Close]
BLAST of Chy12G217490 vs. ExPASy TrEMBL
Match: A0A0A0LUG9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G051700 PE=4 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 1.9e-80
Identity = 150/165 (90.91%), Postives = 153/165 (92.73%), Query Frame = 0 

Query: 32  SVIF--VSPLLNFPAPFSSYPNIMDSGPPSLLPLDLNTTTVAPHRKLLLTREATIEEPTR 91
           SVIF  V  +  F +   + PNIMDSGPPS LPLDLNTTTVAPHRKLLLTREATIEEPTR
Sbjct: 18  SVIFALVLFIFFFVSAILTDPNIMDSGPPSFLPLDLNTTTVAPHRKLLLTREATIEEPTR 77

Query: 92  IWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINP 151
           IWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINP
Sbjct: 78  IWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINP 137

Query: 152 RVFKRLRYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVLCM 195
           RVFKRLRYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVLCM
Sbjct: 138 RVFKRLRYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVLCM 182

[Close]
BLAST of Chy12G217490 vs. ExPASy TrEMBL
Match: A0A1S3B0P8 (protein TAPETUM DETERMINANT 1 OS=Cucumis melo OX=3656 GN=LOC103484600 PE=4 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 1.2e-77
Identity = 146/165 (88.48%), Postives = 150/165 (90.91%), Query Frame = 0 

Query: 30  FPSVIFVSPLLNFPAPFSSYPNIMDSGPPSLLPLDLNTTTVAPHRKLLLTREATIEEPTR 89
           F  VIFV     F +   +  NIMDS PPS LPL+LNTTTVAPHRKLLLTREATIEEPTR
Sbjct: 21  FALVIFV---FFFLSAVLTDSNIMDSSPPSFLPLNLNTTTVAPHRKLLLTREATIEEPTR 80

Query: 90  IWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINP 149
           IWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINP
Sbjct: 81  IWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINP 140

Query: 150 RVFKRLRYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVLCM 195
           RVFKRLRYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVLC+
Sbjct: 141 RVFKRLRYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVLCI 182

[Close]
BLAST of Chy12G217490 vs. ExPASy TrEMBL
Match: A0A5A7UPF3 (Protein TAPETUM DETERMINANT 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold80G001940 PE=4 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 1.2e-77
Identity = 146/165 (88.48%), Postives = 150/165 (90.91%), Query Frame = 0 

Query: 30  FPSVIFVSPLLNFPAPFSSYPNIMDSGPPSLLPLDLNTTTVAPHRKLLLTREATIEEPTR 89
           F  VIFV     F +   +  NIMDS PPS LPL+LNTTTVAPHRKLLLTREATIEEPTR
Sbjct: 21  FALVIFV---FFFLSAVLTDSNIMDSSPPSFLPLNLNTTTVAPHRKLLLTREATIEEPTR 80

Query: 90  IWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINP 149
           IWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINP
Sbjct: 81  IWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINP 140

Query: 150 RVFKRLRYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVLCM 195
           RVFKRLRYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVLC+
Sbjct: 141 RVFKRLRYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVLCI 182

[Close]
BLAST of Chy12G217490 vs. ExPASy TrEMBL
Match: A0A5D3BLS2 (Protein TAPETUM DETERMINANT 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G004880 PE=4 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 2.5e-75
Identity = 146/174 (83.91%), Postives = 150/174 (86.21%), Query Frame = 0 

Query: 30  FPSVIFVSPLLNFPAPFSSYPNIMDSGPPSLLPLDLNTTTVAPHRKLLLTR--------- 89
           F  VIFV     F +   +  NIMDS PPS LPL+LNTTTVAPHRKLLLTR         
Sbjct: 21  FALVIFV---FFFLSAVLTDSNIMDSSPPSFLPLNLNTTTVAPHRKLLLTRMRGGIERLG 80

Query: 90  EATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCEIYGIHFKCGW 149
           EATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCEIYGIHFKCGW
Sbjct: 81  EATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCEIYGIHFKCGW 140

Query: 150 FSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVLCM 195
           FSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVLC+
Sbjct: 141 FSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVLCI 191

[Close]
BLAST of Chy12G217490 vs. ExPASy TrEMBL
Match: A0A6J1C840 (protein TAPETUM DETERMINANT 1-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111009090 PE=4 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 1.0e-73
Identity = 132/143 (92.31%), Postives = 138/143 (96.50%), Query Frame = 0 

Query: 51  NIMDSGPPSLLPLDLNTTTVAPHRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPL 110
           + M+S PPS LPL LNTT VAPHRKLLLT+EATIEEPTRIWGEKCTKSDIVINQGPTAPL
Sbjct: 42  SFMNSSPPSYLPLGLNTTIVAPHRKLLLTKEATIEEPTRIWGEKCTKSDIVINQGPTAPL 101

Query: 111 PTGIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVY 170
           PTGIPTYTVEVVNACVTGC+IYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVY
Sbjct: 102 PTGIPTYTVEVVNACVTGCDIYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVY 161

Query: 171 GGTLSFQYANTYPYPLSVSSVLC 194
           GGTLSFQYANT+PYPLSVSSV+C
Sbjct: 162 GGTLSFQYANTFPYPLSVSSVVC 184

[Close]
BLAST of Chy12G217490 vs. NCBI nr
Match: XP_004153503.1 (protein TAPETUM DETERMINANT 1 [Cucumis sativus] >XP_011652240.1 protein TAPETUM DETERMINANT 1 [Cucumis sativus] >XP_011652243.1 protein TAPETUM DETERMINANT 1 [Cucumis sativus] >XP_031736243.1 protein TAPETUM DETERMINANT 1 [Cucumis sativus] >KGN64432.1 hypothetical protein Csa_014163 [Cucumis sativus])

HSP 1 Score: 307 bits (787), Expect = 3.06e-104
Identity = 144/145 (99.31%), Postives = 144/145 (99.31%), Query Frame = 0 

Query: 50  PNIMDSGPPSLLPLDLNTTTVAPHRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAP 109
           PNIMDSGPPS LPLDLNTTTVAPHRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAP
Sbjct: 38  PNIMDSGPPSFLPLDLNTTTVAPHRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAP 97

Query: 110 LPTGIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLV 169
           LPTGIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLV
Sbjct: 98  LPTGIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLV 157

Query: 170 YGGTLSFQYANTYPYPLSVSSVLCM 194
           YGGTLSFQYANTYPYPLSVSSVLCM
Sbjct: 158 YGGTLSFQYANTYPYPLSVSSVLCM 182

[Close]
BLAST of Chy12G217490 vs. NCBI nr
Match: XP_008439976.1 (PREDICTED: protein TAPETUM DETERMINANT 1 [Cucumis melo] >XP_008439984.1 PREDICTED: protein TAPETUM DETERMINANT 1 [Cucumis melo] >XP_008439993.1 PREDICTED: protein TAPETUM DETERMINANT 1 [Cucumis melo] >XP_008440012.1 PREDICTED: protein TAPETUM DETERMINANT 1 [Cucumis melo] >KAA0055349.1 protein TAPETUM DETERMINANT 1 [Cucumis melo var. makuwa])

HSP 1 Score: 299 bits (766), Expect = 4.84e-101
Identity = 140/144 (97.22%), Postives = 142/144 (98.61%), Query Frame = 0 

Query: 51  NIMDSGPPSLLPLDLNTTTVAPHRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPL 110
           NIMDS PPS LPL+LNTTTVAPHRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPL
Sbjct: 39  NIMDSSPPSFLPLNLNTTTVAPHRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPL 98

Query: 111 PTGIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVY 170
           PTGIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVY
Sbjct: 99  PTGIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVY 158

Query: 171 GGTLSFQYANTYPYPLSVSSVLCM 194
           GGTLSFQYANTYPYPLSVSSVLC+
Sbjct: 159 GGTLSFQYANTYPYPLSVSSVLCI 182

[Close]
BLAST of Chy12G217490 vs. NCBI nr
Match: TYJ99275.1 (protein TAPETUM DETERMINANT 1 [Cucumis melo var. makuwa])

HSP 1 Score: 291 bits (746), Expect = 7.35e-98
Identity = 140/153 (91.50%), Postives = 142/153 (92.81%), Query Frame = 0 

Query: 51  NIMDSGPPSLLPLDLNTTTVAPHRKLLLTR---------EATIEEPTRIWGEKCTKSDIV 110
           NIMDS PPS LPL+LNTTTVAPHRKLLLTR         EATIEEPTRIWGEKCTKSDIV
Sbjct: 39  NIMDSSPPSFLPLNLNTTTVAPHRKLLLTRMRGGIERLGEATIEEPTRIWGEKCTKSDIV 98

Query: 111 INQGPTAPLPTGIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCL 170
           INQGPTAPLPTGIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCL
Sbjct: 99  INQGPTAPLPTGIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCL 158

Query: 171 VNDGKPLVYGGTLSFQYANTYPYPLSVSSVLCM 194
           VNDGKPLVYGGTLSFQYANTYPYPLSVSSVLC+
Sbjct: 159 VNDGKPLVYGGTLSFQYANTYPYPLSVSSVLCI 191

[Close]
BLAST of Chy12G217490 vs. NCBI nr
Match: XP_022137731.1 (protein TAPETUM DETERMINANT 1-like isoform X1 [Momordica charantia] >XP_022137732.1 protein TAPETUM DETERMINANT 1-like isoform X1 [Momordica charantia] >XP_022137733.1 protein TAPETUM DETERMINANT 1-like isoform X1 [Momordica charantia] >XP_022137734.1 protein TAPETUM DETERMINANT 1-like isoform X1 [Momordica charantia] >XP_022137735.1 protein TAPETUM DETERMINANT 1-like isoform X1 [Momordica charantia])

HSP 1 Score: 285 bits (729), Expect = 2.32e-95
Identity = 132/143 (92.31%), Postives = 138/143 (96.50%), Query Frame = 0 

Query: 51  NIMDSGPPSLLPLDLNTTTVAPHRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPL 110
           + M+S PPS LPL LNTT VAPHRKLLLT+EATIEEPTRIWGEKCTKSDIVINQGPTAPL
Sbjct: 42  SFMNSSPPSYLPLGLNTTIVAPHRKLLLTKEATIEEPTRIWGEKCTKSDIVINQGPTAPL 101

Query: 111 PTGIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVY 170
           PTGIPTYTVEVVNACVTGC+IYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVY
Sbjct: 102 PTGIPTYTVEVVNACVTGCDIYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVY 161

Query: 171 GGTLSFQYANTYPYPLSVSSVLC 193
           GGTLSFQYANT+PYPLSVSSV+C
Sbjct: 162 GGTLSFQYANTFPYPLSVSSVVC 184

[Close]
BLAST of Chy12G217490 vs. NCBI nr
Match: XP_038893959.1 (protein TAPETUM DETERMINANT 1-like [Benincasa hispida] >XP_038893960.1 protein TAPETUM DETERMINANT 1-like [Benincasa hispida] >XP_038893961.1 protein TAPETUM DETERMINANT 1-like [Benincasa hispida] >XP_038893962.1 protein TAPETUM DETERMINANT 1-like [Benincasa hispida])

HSP 1 Score: 283 bits (725), Expect = 6.04e-95
Identity = 132/143 (92.31%), Postives = 137/143 (95.80%), Query Frame = 0 

Query: 51  NIMDSGPPSLLPLDLNTTTVAPHRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPL 110
           +IM+S PPS L L LNTT VAPHRKLLLTR+ATIEEPTRIWGEKCTKSDIVINQGPTAPL
Sbjct: 29  DIMNSSPPSFLRLGLNTTIVAPHRKLLLTRQATIEEPTRIWGEKCTKSDIVINQGPTAPL 88

Query: 111 PTGIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVY 170
           PTGIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPR+FKRLRYDDCLVNDGKPLVY
Sbjct: 89  PTGIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRIFKRLRYDDCLVNDGKPLVY 148

Query: 171 GGTLSFQYANTYPYPLSVSSVLC 193
           GGTLSFQYANT+PYPLSVSSV C
Sbjct: 149 GGTLSFQYANTFPYPLSVSSVAC 171

[Close]
BLAST of Chy12G217490 vs. TAIR 10
Match: AT4G24972.1 (tapetum determinant 1 )

HSP 1 Score: 166.8 bits (421), Expect = 1.8e-41
Identity = 85/140 (60.71%), Postives = 99/140 (70.71%), Query Frame = 0 

Query: 63  LDL-NTTTVAP---HRKLLLTREATIE-----EPTRIWGEKCTKSDIVINQGPTAPLPTG 122
           LDL  TTT +P   HRK+LL    T +     EP RI GEKC  +DIV+NQ  T P+P G
Sbjct: 37  LDLTKTTTSSPSISHRKMLLLSPGTGKTERSVEPERI-GEKCKSTDIVVNQAVTEPMPNG 96

Query: 123 IPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGT 182
           IP Y VE+ N C++GC I  IH  CGWFSSA LINPRVFKR+ YDDCLVN+GKPL +G T
Sbjct: 97  IPGYMVEITNQCMSGCIISRIHINCGWFSSAKLINPRVFKRIHYDDCLVNNGKPLPFGST 156

Query: 183 LSFQYANTYPYPLSVSSVLC 194
           LSF YANT+PY LSV+ V C
Sbjct: 157 LSFHYANTFPYHLSVAFVTC 175

[Close]
BLAST of Chy12G217490 vs. TAIR 10
Match: AT1G32583.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: tapetum determinant 1 (TAIR:AT4G24972.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 159.5 bits (402), Expect = 2.8e-39
Identity = 75/131 (57.25%), Postives = 96/131 (73.28%), Query Frame = 0 

Query: 63  LDLNTTTVAPHRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVV 122
           + +N    A  RKLLL+ +  I + T   G+ C+K DIV+ QG T PLP+G+P+YTVE+ 
Sbjct: 50  VSINENRTALSRKLLLSPD--IGDGTNRIGQDCSKDDIVLFQGSTNPLPSGVPSYTVEIF 109

Query: 123 NACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQYANTY 182
           N+CV+ C I  IH  CGWFSS  L+NPRVF+RL YDDCLVNDG+PL  G +LSFQYAN++
Sbjct: 110 NSCVSDCNIAEIHVSCGWFSSVRLVNPRVFRRLDYDDCLVNDGQPLGPGQSLSFQYANSF 169

Query: 183 PYPLSVSSVLC 194
            YPLSV+SV C
Sbjct: 170 SYPLSVASVSC 178

[Close]
BLAST of Chy12G217490 vs. TAIR 10
Match: AT1G05835.1 (PHD finger protein )

HSP 1 Score: 49.7 bits (117), Expect = 3.1e-06
Identity = 28/72 (38.89%), Postives = 40/72 (55.56%), Query Frame = 0 

Query: 117 YTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYD--DCLVNDGKPLVYGGTL 176
           + VEV+N C   C I  +  KC  F  + L++P   + L     +C+VNDG PL    TL
Sbjct: 48  FRVEVMNKCPM-CPIINLRLKCQGFPQS-LVDPTFLRVLSSSAGNCVVNDGLPLSPMQTL 107

Query: 177 SFQYANTYPYPL 187
           SF Y+NT+ + L
Sbjct: 108 SFNYSNTHQFAL 117

The following BLAST results are available for this feature:
BLAST of Chy12G217490 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q6TLJ22.5e-4060.71Protein TAPETUM DETERMINANT 1 OS=Arabidopsis thaliana OX=3702 GN=TPD1 PE=1 SV=1[more]
Q1G3T14.0e-3857.25TPD1 protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=TDL1 PE=2 SV=1[more]
Q2QR541.5e-2955.88TPD1 protein homolog 1A OS=Oryza sativa subsp. japonica OX=39947 GN=TDL1A PE=1 S... [more]
Q8S6P96.1e-2342.86TPD1 protein homolog 1B OS=Oryza sativa subsp. japonica OX=39947 GN=TDL1B PE=2 S... [more]
A8MS784.4e-0538.89Uncharacterized protein At1g05835 OS=Arabidopsis thaliana OX=3702 GN=At1g05835 P... [more]
BLAST of Chy12G217490 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LUG91.9e-8090.91Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G051700 PE=4 SV=1[more]
A0A1S3B0P81.2e-7788.48protein TAPETUM DETERMINANT 1 OS=Cucumis melo OX=3656 GN=LOC103484600 PE=4 SV=1[more]
A0A5A7UPF31.2e-7788.48Protein TAPETUM DETERMINANT 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc... [more]
A0A5D3BLS22.5e-7583.91Protein TAPETUM DETERMINANT 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... [more]
A0A6J1C8401.0e-7392.31protein TAPETUM DETERMINANT 1-like isoform X1 OS=Momordica charantia OX=3673 GN=... [more]
BLAST of Chy12G217490 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004153503.13.06e-10499.31protein TAPETUM DETERMINANT 1 [Cucumis sativus] >XP_011652240.1 protein TAPETUM ... [more]
XP_008439976.14.84e-10197.22PREDICTED: protein TAPETUM DETERMINANT 1 [Cucumis melo] >XP_008439984.1 PREDICTE... [more]
TYJ99275.17.35e-9891.50protein TAPETUM DETERMINANT 1 [Cucumis melo var. makuwa][more]
XP_022137731.12.32e-9592.31protein TAPETUM DETERMINANT 1-like isoform X1 [Momordica charantia] >XP_02213773... [more]
XP_038893959.16.04e-9592.31protein TAPETUM DETERMINANT 1-like [Benincasa hispida] >XP_038893960.1 protein T... [more]
BLAST of Chy12G217490 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G24972.11.8e-4160.71tapetum determinant 1 [more]
AT1G32583.12.8e-3957.25FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
AT1G05835.13.1e-0638.89PHD finger protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR040361Tapetum determinant 1PANTHERPTHR33184PROTEIN TAPETUM DETERMINANT 1-LIKE-RELATEDcoord: 65..193
NoneNo IPR availablePANTHERPTHR33184:SF67PROTEIN TAPETUM DETERMINANT 1coord: 65..193

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy12G217490.1Chy12G217490.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0001709 cell fate determination
cellular_component GO:0016021 integral component of membrane