Chy12G216530 (gene) Cucumber (hystrix) v1

Overview


Name	Chy12G216530
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Patatin
Location	chrH12: 15704488 .. 15704823 (+)
RNA-Seq Expression	Chy12G216530
Synteny	Chy12G216530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCAACTGCTCCTGTTGCCATTGGAACTCGAGGAACCATTGGTTCGCTCGTCAAGAAAGAAATCGATTATTTTGCCAAGATTGAGCTTGAAACCTCCATTAGCTCACAGAGGTCTCAAGGACCTGAAATGCCTTCTTCTGGCTGTAGAAGTTCACCACCCACCTTCTGGCAATCTTTAATGTCATGGCGAAGGAAGACGAAGCTAACCAGCAATCGCTTTGTTACAAAAATGTGCTCAACTTTTGATGCTTCGAGAAGCAATCGAATGAATAAGATTTCTGGGTTGAGTTATACGATCCTTCAGAATGATTTCCATAGCTTGCACGTGTAG

mRNA sequence

ATGGCTGCAACTGCTCCTGTTGCCATTGGAACTCGAGGAACCATTGGTTCGCTCGTCAAGAAAGAAATCGATTATTTTGCCAAGATTGAGCTTGAAACCTCCATTAGCTCACAGAGGTCTCAAGGACCTGAAATGCCTTCTTCTGGCTGTAGAAGTTCACCACCCACCTTCTGGCAATCTTTAATGTCATGGCGAAGGAAGACGAAGCTAACCAGCAATCGCTTTGTTACAAAAATGTGCTCAACTTTTGATGCTTCGAGAAGCAATCGAATGAATAAGATTTCTGGGTTGAGTTATACGATCCTTCAGAATGATTTCCATAGCTTGCACGTGTAG

Coding sequence (CDS)

ATGGCTGCAACTGCTCCTGTTGCCATTGGAACTCGAGGAACCATTGGTTCGCTCGTCAAGAAAGAAATCGATTATTTTGCCAAGATTGAGCTTGAAACCTCCATTAGCTCACAGAGGTCTCAAGGACCTGAAATGCCTTCTTCTGGCTGTAGAAGTTCACCACCCACCTTCTGGCAATCTTTAATGTCATGGCGAAGGAAGACGAAGCTAACCAGCAATCGCTTTGTTACAAAAATGTGCTCAACTTTTGATGCTTCGAGAAGCAATCGAATGAATAAGATTTCTGGGTTGAGTTATACGATCCTTCAGAATGATTTCCATAGCTTGCACGTGTAG

Protein sequence

MAATAPVAIGTRGTIGSLVKKEIDYFAKIELETSISSQRSQGPEMPSSGCRSSPPTFWQSLMSWRRKTKLTSNRFVTKMCSTFDASRSNRMNKISGLSYTILQNDFHSLHV*

Homology

[Close]

BLAST of Chy12G216530 vs. ExPASy TrEMBL
Match: A0A0A0LX43 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G063600 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 3.8e-52
Identity = 108/111 (97.30%), Postives = 109/111 (98.20%), Query Frame = 0


Query: 1   MAATAPVAIGTRGTIGSLVKKEIDYFAKIELETSISSQRSQGPEMPSSGCRSSPPTFWQS 60
           MAA APVAIGTRGTIGSLVKKEIDYFAKIELETSISSQRSQGPEM SSGCRSSPPTFWQS
Sbjct: 17  MAAIAPVAIGTRGTIGSLVKKEIDYFAKIELETSISSQRSQGPEMASSGCRSSPPTFWQS 76

Query: 61  LMSWRRKTKLTSNRFVTKMCSTFDASRSNRMNKISGLSYTILQNDFHSLHV 112
           LMSWRRKTKLTSNRFVTKMCSTFDASRSNRMNKISGLSYTILQNDFHSLH+
Sbjct: 77  LMSWRRKTKLTSNRFVTKMCSTFDASRSNRMNKISGLSYTILQNDFHSLHM 127

[Close]

BLAST of Chy12G216530 vs. ExPASy TrEMBL
Match: A0A1S4DSE9 (uncharacterized protein LOC103485409 OS=Cucumis melo OX=3656 GN=LOC103485409 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 4.9e-52
Identity = 106/111 (95.50%), Postives = 109/111 (98.20%), Query Frame = 0


Query: 1   MAATAPVAIGTRGTIGSLVKKEIDYFAKIELETSISSQRSQGPEMPSSGCRSSPPTFWQS 60
           MAATAPVAIGTRGTIGSL+KKEIDYFAKIELETSISSQRSQGPEM SSGCRSSPPTFWQS
Sbjct: 1   MAATAPVAIGTRGTIGSLIKKEIDYFAKIELETSISSQRSQGPEMASSGCRSSPPTFWQS 60

Query: 61  LMSWRRKTKLTSNRFVTKMCSTFDASRSNRMNKISGLSYTILQNDFHSLHV 112
           +MSWRRK KLTSNRF+TKMCSTFDASRSNRMNKISGLSYTILQNDFHSLHV
Sbjct: 61  IMSWRRKKKLTSNRFITKMCSTFDASRSNRMNKISGLSYTILQNDFHSLHV 111

[Close]

BLAST of Chy12G216530 vs. ExPASy TrEMBL
Match: A0A5A7UTL1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005900 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 5.4e-43
Identity = 91/97 (93.81%), Postives = 95/97 (97.94%), Query Frame = 0


Query: 1   MAATAPVAIGTRGTIGSLVKKEIDYFAKIELETSISSQRSQGPEMPSSGCRSSPPTFWQS 60
           MAATAPVAIGTRGTIGSL+KKEIDYFAKIELETSISSQRSQGPEM SSGCRSSPPTFWQS
Sbjct: 17  MAATAPVAIGTRGTIGSLIKKEIDYFAKIELETSISSQRSQGPEMASSGCRSSPPTFWQS 76

Query: 61  LMSWRRKTKLTSNRFVTKMCSTFDASRSNRMNKISGL 98
           +MSWRRK KLTSNRF+TKMCSTFDASRSNRMNKISG+
Sbjct: 77  IMSWRRKKKLTSNRFITKMCSTFDASRSNRMNKISGI 113

[Close]

BLAST of Chy12G216530 vs. ExPASy TrEMBL
Match: A0A6J1CHB1 (uncharacterized protein LOC111010862 OS=Momordica charantia OX=3673 GN=LOC111010862 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 3.9e-33
Identity = 79/112 (70.54%), Postives = 89/112 (79.46%), Query Frame = 0


Query: 1   MAATAPVAIGTRGTIGSLVKKEIDYFAKIELETSISSQRSQGPEMPSSGCR-SSPPTFWQ 60
           MAATAPVAIGTRGT+GSLVKKEIDYFAKIE E      R  G +M SS  R SSPPTFW 
Sbjct: 17  MAATAPVAIGTRGTVGSLVKKEIDYFAKIEFE------RCSGNDMASSSRRSSSPPTFWH 76

Query: 61  SLMSWRRKTKLTSNRFVTKMCSTFDASRSNRMNKISGLSYTILQNDFHSLHV 112
           ++MSWRRK K   NRF+TK+CS FD S SNR+NKISG +YTILQNDF+SLH+
Sbjct: 77  TVMSWRRKKKRIGNRFITKICSAFDVSGSNRLNKISGFNYTILQNDFNSLHM 122

[Close]

BLAST of Chy12G216530 vs. ExPASy TrEMBL
Match: A0A314Z3X1 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_12060 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.7e-20
Identity = 57/117 (48.72%), Postives = 85/117 (72.65%), Query Frame = 0


Query: 1   MAATAPVAIGTRGTIGSLVKKEIDYFAKIELET---SISSQRSQGP--EMPSSGC-RSSP 60
           MAA AP+AIGTRGT+GSLV+KEI+YF+K+EL+    S SS++ QG   +M SS C  SS 
Sbjct: 19  MAAPAPIAIGTRGTVGSLVRKEIEYFSKLELDRLRGSSSSRKPQGQIVDMTSSSCTHSSK 78

Query: 61  PTFWQSLMSWRRKTKLTSNRFVTKMCSTFDASRSNRMNKISGLSYTILQNDFHSLHV 112
           P+FW  +M+W+RK + +S RF++ +CS    + +NR+N I G +Y IL++D ++L +
Sbjct: 79  PSFWFLIMTWKRKKRRSSRRFLSSICSATKVAETNRLNCIPGFNYRILKDDMNNLSI 135

[Close]

BLAST of Chy12G216530 vs. NCBI nr
Match: XP_011648422.1 (uncharacterized protein LOC105434455 [Cucumis sativus])

HSP 1 Score: 214 bits (545), Expect = 7.60e-70
Identity = 108/111 (97.30%), Postives = 109/111 (98.20%), Query Frame = 0


Query: 1   MAATAPVAIGTRGTIGSLVKKEIDYFAKIELETSISSQRSQGPEMPSSGCRSSPPTFWQS 60
           MAA APVAIGTRGTIGSLVKKEIDYFAKIELETSISSQRSQGPEM SSGCRSSPPTFWQS
Sbjct: 1   MAAIAPVAIGTRGTIGSLVKKEIDYFAKIELETSISSQRSQGPEMASSGCRSSPPTFWQS 60

Query: 61  LMSWRRKTKLTSNRFVTKMCSTFDASRSNRMNKISGLSYTILQNDFHSLHV 111
           LMSWRRKTKLTSNRFVTKMCSTFDASRSNRMNKISGLSYTILQNDFHSLH+
Sbjct: 61  LMSWRRKTKLTSNRFVTKMCSTFDASRSNRMNKISGLSYTILQNDFHSLHM 111

[Close]

BLAST of Chy12G216530 vs. NCBI nr
Match: XP_016898893.1 (PREDICTED: uncharacterized protein LOC103485409 [Cucumis melo])

HSP 1 Score: 214 bits (544), Expect = 1.08e-69
Identity = 106/111 (95.50%), Postives = 109/111 (98.20%), Query Frame = 0


Query: 1   MAATAPVAIGTRGTIGSLVKKEIDYFAKIELETSISSQRSQGPEMPSSGCRSSPPTFWQS 60
           MAATAPVAIGTRGTIGSL+KKEIDYFAKIELETSISSQRSQGPEM SSGCRSSPPTFWQS
Sbjct: 1   MAATAPVAIGTRGTIGSLIKKEIDYFAKIELETSISSQRSQGPEMASSGCRSSPPTFWQS 60

Query: 61  LMSWRRKTKLTSNRFVTKMCSTFDASRSNRMNKISGLSYTILQNDFHSLHV 111
           +MSWRRK KLTSNRF+TKMCSTFDASRSNRMNKISGLSYTILQNDFHSLHV
Sbjct: 61  IMSWRRKKKLTSNRFITKMCSTFDASRSNRMNKISGLSYTILQNDFHSLHV 111

[Close]

BLAST of Chy12G216530 vs. NCBI nr
Match: KGN64543.2 (hypothetical protein Csa_013063 [Cucumis sativus])

HSP 1 Score: 214 bits (545), Expect = 1.51e-69
Identity = 108/111 (97.30%), Postives = 109/111 (98.20%), Query Frame = 0


Query: 1   MAATAPVAIGTRGTIGSLVKKEIDYFAKIELETSISSQRSQGPEMPSSGCRSSPPTFWQS 60
           MAA APVAIGTRGTIGSLVKKEIDYFAKIELETSISSQRSQGPEM SSGCRSSPPTFWQS
Sbjct: 1   MAAIAPVAIGTRGTIGSLVKKEIDYFAKIELETSISSQRSQGPEMASSGCRSSPPTFWQS 60

Query: 61  LMSWRRKTKLTSNRFVTKMCSTFDASRSNRMNKISGLSYTILQNDFHSLHV 111
           LMSWRRKTKLTSNRFVTKMCSTFDASRSNRMNKISGLSYTILQNDFHSLH+
Sbjct: 61  LMSWRRKTKLTSNRFVTKMCSTFDASRSNRMNKISGLSYTILQNDFHSLHM 111

[Close]

BLAST of Chy12G216530 vs. NCBI nr
Match: KAA0056869.1 (hypothetical protein E6C27_scaffold96G00380 [Cucumis melo var. makuwa] >TYJ99372.1 hypothetical protein E5676_scaffold248G005900 [Cucumis melo var. makuwa])

HSP 1 Score: 184 bits (467), Expect = 3.38e-57
Identity = 91/97 (93.81%), Postives = 95/97 (97.94%), Query Frame = 0


Query: 1   MAATAPVAIGTRGTIGSLVKKEIDYFAKIELETSISSQRSQGPEMPSSGCRSSPPTFWQS 60
           MAATAPVAIGTRGTIGSL+KKEIDYFAKIELETSISSQRSQGPEM SSGCRSSPPTFWQS
Sbjct: 17  MAATAPVAIGTRGTIGSLIKKEIDYFAKIELETSISSQRSQGPEMASSGCRSSPPTFWQS 76

Query: 61  LMSWRRKTKLTSNRFVTKMCSTFDASRSNRMNKISGL 97
           +MSWRRK KLTSNRF+TKMCSTFDASRSNRMNKISG+
Sbjct: 77  IMSWRRKKKLTSNRFITKMCSTFDASRSNRMNKISGI 113

[Close]

BLAST of Chy12G216530 vs. NCBI nr
Match: KAG6584077.1 (hypothetical protein SDJN03_20009, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 162 bits (410), Expect = 3.22e-49
Identity = 84/114 (73.68%), Postives = 97/114 (85.09%), Query Frame = 0


Query: 1   MAATAPVAIGTRGTIGSLVKKEIDYFAKIELE--TSISSQRSQGPEMPSSGCRSSPPTFW 60
           MAATA VAIGTRGTIGSL+KKEIDYFAKIELE  +S SSQR Q P+M +SGC SSPPTFW
Sbjct: 1   MAATASVAIGTRGTIGSLIKKEIDYFAKIELERCSSRSSQRPQAPDMATSGCSSSPPTFW 60

Query: 61  QSLMSWRRKTKLTSNRFVTKMCST-FDASRSNRMNKISGLSYTILQNDFHSLHV 111
            S+MSWRRK K + +RFV K+CS+ FD S SN+MNKISG +YTILQN+FHSLH+
Sbjct: 61  HSVMSWRRKKKRSRSRFVPKICSSAFDVSESNQMNKISGFNYTILQNNFHSLHM 114

[Close]

BLAST of Chy12G216530 vs. TAIR 10
Match: AT4G21780.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 60.5 bits (145), Expect = 1.0e-09
Identity = 42/109 (38.53%), Postives = 55/109 (50.46%), Query Frame = 0


Query: 5   APVAIGTRGTIGSLVKKEIDYFAKIE-LETSISSQRSQGPEMPSS----GCRSSPPTFWQ 64
           AP+AIGTRGTIGSLV+KEIDYF            +R    E  ++       SS    W 
Sbjct: 3   APIAIGTRGTIGSLVRKEIDYFKNFSTCHPQFDPRRGNSEENKNTFKQRDRSSSRLGSWF 62

Query: 65  SLMSWRRKTKLT---SNRFVTKMCSTFDASRSNRMNKISGLSYTILQND 106
           S   WR+K + T     +F   MCS  + S  NR   + G +Y IL++D
Sbjct: 63  SKTKWRKKKRQTRGGGGKFFPSMCSAVEVSGENR---VPGFNYRILKSD 108

The following BLAST results are available for this feature:

BLAST of Chy12G216530 vs.


Match Name	E-value	Identity	Description

BLAST of Chy12G216530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LX43	3.8e-52	97.30	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G063600 PE=4 SV=1	[more]
A0A1S4DSE9	4.9e-52	95.50	uncharacterized protein LOC103485409 OS=Cucumis melo OX=3656 GN=LOC103485409 PE=...	[more]
A0A5A7UTL1	5.4e-43	93.81	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1CHB1	3.9e-33	70.54	uncharacterized protein LOC111010862 OS=Momordica charantia OX=3673 GN=LOC111010...	[more]
A0A314Z3X1	1.7e-20	48.72	Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_120...	[more]

BLAST of Chy12G216530 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011648422.1	7.60e-70	97.30	uncharacterized protein LOC105434455 [Cucumis sativus]	[more]
XP_016898893.1	1.08e-69	95.50	PREDICTED: uncharacterized protein LOC103485409 [Cucumis melo]	[more]
KGN64543.2	1.51e-69	97.30	hypothetical protein Csa_013063 [Cucumis sativus]	[more]
KAA0056869.1	3.38e-57	93.81	hypothetical protein E6C27_scaffold96G00380 [Cucumis melo var. makuwa] >TYJ99372...	[more]
KAG6584077.1	3.22e-49	73.68	hypothetical protein SDJN03_20009, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Chy12G216530 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G21780.1	1.0e-09	38.53	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35131:SF1	EXPRESSED PROTEIN	coord: 1..110
None	No IPR available	PANTHER	PTHR35131	EXPRESSED PROTEIN	coord: 1..110

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy12G216530.1	Chy12G216530.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000162	tryptophan biosynthetic process
cellular_component	GO:0005737	cytoplasm