Chy12G213540 (gene) Cucumber (hystrix) v1

Overview


Name	Chy12G213540
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Cyclin-dependent protein kinase inhibitor SMR2
Location	chrH12: 11600057 .. 11601138 (-)
RNA-Seq Expression	Chy12G213540
Synteny	Chy12G213540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTCAATTTCACAAATCCGATCAACAGAAGGTGTTAGAAGCCCCAGAGGCACCGGAATACGGTGATCGAAGCACGGAGGAAGGTAGCGGAGAAGCACTTAAAGCAGCGGAGCATGATGACGGCGAGAGCTGTCAAACACCGACGTCACCCCAGCATCGAATTCCGATCGCACAAAGCTGCCCGACGACACCAAGAAAACAGAGAGTTGTGAGGAAGAGGAAATTTTCTGACCAAAGCTTCTTTGAAGCCACCGGAAGAGGAGAGGTAGAATCCTTGTTTGGCTTATTTTATAGGGTTTCTTCTTCTAAAAGAAGGTGTACAAGTGTATAAAACCCTAAAGTGTTTGTATATTTAGATATATATATTGATATATACACGGTTAAATTATAAGTTTGATCTTTAAATTTACAAGGTCTATCTATTTAACGTTCATATTTAATCAATTATATTCTAATAAAATTCTAAATTTCATTTTTTAACTACTTGATTTTTTATTCTTAGTTCTAAAATTTTGGTCTATAAACAAAACCTTTCTACTTTTGTATCTCTTGTTTTGTTTTCTACTCTATTTTACCAAATGTTTTAAAAATGAATTCACTTTTTTTTTTTTAGTTTTTAAAATTGGGGTAAAAATTCAATTATGTTGCTTAAAAAGATTAACACACAATGACAAGAAATTGATAGGTTATACGCTAGTCTTTAAGAAACCAAAACCAAAAAATTAAATAGTTACCAAACAAGTTCTAAAGCTTTTACTTAACATACCAACCGTGCATTATTTTAAAGAATATGCTTGAATTACTTGTTACACAATCCTTTAATAATGAAAGTAATCTATAGATTGAAGCATAGAGTTATTAGAAAGAAGATTGAAAGTTTGAAGAGATCATTTATTAGAAACATAGAGAAGGAATAGATGAAAACCTCCCAAGATTAGGCAAAACTCAAGTAAAAATTGAACCTAAGGAATATTTGTTAACTTGGTAAAATAAATAAATAAAAAGTTGTTTTTATTGCTTTTTCTGATATATAAGTTTCATGTAAAGTGAAAACAGATTACTGAATTGAATGATACTTGA

mRNA sequence

ATGTCTCAATTTCACAAATCCGATCAACAGAAGGTGTTAGAAGCCCCAGAGGCACCGGAATACGGTGATCGAAGCACGGAGGAAGGTAGCGGAGAAGCACTTAAAGCAGCGGAGCATGATGACGGCGAGAGCTGTCAAACACCGACGTCACCCCAGCATCGAATTCCGATCGCACAAAGCTGCCCGACGACACCAAGAAAACAGAGAGTTGTGAGGAAGAGGAAATTTTCTGACCAAAGCTTCTTTGAAGCCACCGGAAGAGGAGAGATTACTGAATTGAATGATACTTGA

Coding sequence (CDS)

ATGTCTCAATTTCACAAATCCGATCAACAGAAGGTGTTAGAAGCCCCAGAGGCACCGGAATACGGTGATCGAAGCACGGAGGAAGGTAGCGGAGAAGCACTTAAAGCAGCGGAGCATGATGACGGCGAGAGCTGTCAAACACCGACGTCACCCCAGCATCGAATTCCGATCGCACAAAGCTGCCCGACGACACCAAGAAAACAGAGAGTTGTGAGGAAGAGGAAATTTTCTGACCAAAGCTTCTTTGAAGCCACCGGAAGAGGAGAGATTACTGAATTGAATGATACTTGA

Protein sequence

MSQFHKSDQQKVLEAPEAPEYGDRSTEEGSGEALKAAEHDDGESCQTPTSPQHRIPIAQSCPTTPRKQRVVRKRKFSDQSFFEATGRGEITELNDT*

Homology

[Close]

BLAST of Chy12G213540 vs. ExPASy TrEMBL
Match: A0A0A0LV74 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G135270 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 4.9e-40
Identity = 86/89 (96.63%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 1  MSQFHKSDQQKVLEAPEAPEYGDRSTEEGSGEALKAAEHDDGESCQTPTSPQHRIPIAQS 60
          MSQFHKSDQQKVLEAPEAPE+GDRSTEEG GEALKAAEHDDGESC+TPTSPQHRIPIAQS
Sbjct: 1  MSQFHKSDQQKVLEAPEAPEHGDRSTEEGRGEALKAAEHDDGESCRTPTSPQHRIPIAQS 60

Query: 61 CPTTPRKQRVVRKRKFSDQSFFEATGRGE 90
          CPTTPRKQRVVRKRKFSDQSFFEATGRGE
Sbjct: 61 CPTTPRKQRVVRKRKFSDQSFFEATGRGE 89

[Close]

BLAST of Chy12G213540 vs. ExPASy TrEMBL
Match: A0A5D3BHE9 (Cyclin-dependent protein kinase inhibitor SMR2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold565G00010 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.4e-34
Identity = 78/93 (83.87%), Postives = 84/93 (90.32%), Query Frame = 0


Query: 1  MSQFHKSDQQKVLEAPEAPEYGDRSTEEGSGEALKAAEHDDGESCQTPTSPQHRIPIAQS 60
          MSQ HKSDQ+KVLE P+A EYGDRSTEEGSGEALKAAE D+GESC+TPTS +HRIPIAQS
Sbjct: 1  MSQIHKSDQEKVLETPKALEYGDRSTEEGSGEALKAAEDDEGESCRTPTSLRHRIPIAQS 60

Query: 61 CPTTPRKQRVVRKRKFSDQSFFEATGRGEITEL 94
          CPTTPRKQRV RKRK SDQSFFEATGRGE+  L
Sbjct: 61 CPTTPRKQRVARKRKISDQSFFEATGRGEVESL 93

[Close]

BLAST of Chy12G213540 vs. ExPASy TrEMBL
Match: A0A2H5Q221 (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_188970 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 3.8e-08
Identity = 38/68 (55.88%), Postives = 46/68 (67.65%), Query Frame = 0


Query: 26 TEEGSGEALKAAEHD-DGESCQTPTSPQHRIPIAQSCPTTPRKQRVV--RKRKFSDQSFF 85
          TEE +GE ++AA  D   E C+TPTS  H+IP  QSCPTTPRK+  V   KRK  +  FF
Sbjct: 29 TEEEAGEEIQAASEDYTNEDCKTPTSSDHKIPKIQSCPTTPRKKGQVSFHKRKMHEFLFF 88

Query: 86 EATGRGEI 91
          EATGR E+
Sbjct: 89 EATGREEV 96

[Close]

BLAST of Chy12G213540 vs. ExPASy TrEMBL
Match: A0A067F2H9 (Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g0381851mg PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 4.9e-08
Identity = 38/68 (55.88%), Postives = 46/68 (67.65%), Query Frame = 0


Query: 26  TEEGSGEALKAAEHD-DGESCQTPTSPQHRIPIAQSCPTTPRKQRVV--RKRKFSDQSFF 85
           TEE +GE ++AA  D   E C+TPTS  H+IP  QSCPTTPRK+  V   KRK  +  FF
Sbjct: 38  TEEEAGEEIQAASEDYTNEDCKTPTSSDHKIPKIQSCPTTPRKKVQVSFHKRKMHEFLFF 97

Query: 86  EATGRGEI 91
           EATGR E+
Sbjct: 98  EATGREEV 105

[Close]

BLAST of Chy12G213540 vs. ExPASy TrEMBL
Match: V4RSW1 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10029845mg PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 4.9e-08
Identity = 38/68 (55.88%), Postives = 46/68 (67.65%), Query Frame = 0


Query: 26 TEEGSGEALKAAEHD-DGESCQTPTSPQHRIPIAQSCPTTPRKQRVV--RKRKFSDQSFF 85
          TEE +GE ++AA  D   E C+TPTS  H+IP  QSCPTTPRK+  V   KRK  +  FF
Sbjct: 29 TEEEAGEEIQAASEDYTNEDCKTPTSSDHKIPKIQSCPTTPRKKVQVSFHKRKMHEFLFF 88

Query: 86 EATGRGEI 91
          EATGR E+
Sbjct: 89 EATGREEV 96

[Close]

BLAST of Chy12G213540 vs. NCBI nr
Match: KAE8652786.1 (hypothetical protein Csa_022878 [Cucumis sativus])

HSP 1 Score: 176 bits (446), Expect = 6.65e-55
Identity = 88/92 (95.65%), Postives = 90/92 (97.83%), Query Frame = 0


Query: 1  MSQFHKSDQQKVLEAPEAPEYGDRSTEEGSGEALKAAEHDDGESCQTPTSPQHRIPIAQS 60
          MSQFHKSDQQKVLEAPEAPE+GDRSTEEG GEALKAAEHDDGESC+TPTSPQHRIPIAQS
Sbjct: 1  MSQFHKSDQQKVLEAPEAPEHGDRSTEEGRGEALKAAEHDDGESCRTPTSPQHRIPIAQS 60

Query: 61 CPTTPRKQRVVRKRKFSDQSFFEATGRGEITE 92
          CPTTPRKQRVVRKRKFSDQSFFEATGRGEI E
Sbjct: 61 CPTTPRKQRVVRKRKFSDQSFFEATGRGEICE 92

[Close]

BLAST of Chy12G213540 vs. NCBI nr
Match: KAA0052125.1 (cyclin-dependent protein kinase inhibitor SMR2 [Cucumis melo var. makuwa] >TYJ98071.1 cyclin-dependent protein kinase inhibitor SMR2 [Cucumis melo var. makuwa])

HSP 1 Score: 155 bits (391), Expect = 1.22e-46
Identity = 78/93 (83.87%), Postives = 84/93 (90.32%), Query Frame = 0


Query: 1  MSQFHKSDQQKVLEAPEAPEYGDRSTEEGSGEALKAAEHDDGESCQTPTSPQHRIPIAQS 60
          MSQ HKSDQ+KVLE P+A EYGDRSTEEGSGEALKAAE D+GESC+TPTS +HRIPIAQS
Sbjct: 1  MSQIHKSDQEKVLETPKALEYGDRSTEEGSGEALKAAEDDEGESCRTPTSLRHRIPIAQS 60

Query: 61 CPTTPRKQRVVRKRKFSDQSFFEATGRGEITEL 93
          CPTTPRKQRV RKRK SDQSFFEATGRGE+  L
Sbjct: 61 CPTTPRKQRVARKRKISDQSFFEATGRGEVESL 93

[Close]

BLAST of Chy12G213540 vs. NCBI nr
Match: KAG6583595.1 (hypothetical protein SDJN03_19527, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 116 bits (290), Expect = 2.70e-31
Identity = 63/94 (67.02%), Postives = 71/94 (75.53%), Query Frame = 0


Query: 1  MSQFHKSDQQKVLEAPEAPEYGDRSTEE-GSGEALKAAEHDDGESCQTPTSPQHRIPIAQ 60
          MSQFHKSD QKV E P+ PE GDRS EE G GEA+       GESC+TPTS +HRIP A+
Sbjct: 1  MSQFHKSDHQKVKEPPKPPEEGDRSKEEDGGGEAVDCG----GESCRTPTSLRHRIPTAR 60

Query: 61 SCPTTPRKQRVVRKRKFSDQSFFEATGRGEITEL 93
          S PTTPRK++V  KRKFSDQSFFE TGRGE+  L
Sbjct: 61 SYPTTPRKRKVASKRKFSDQSFFEVTGRGEVESL 90

[Close]

BLAST of Chy12G213540 vs. NCBI nr
Match: KAG7019295.1 (hypothetical protein SDJN02_18255, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 116 bits (290), Expect = 2.70e-31
Identity = 62/94 (65.96%), Postives = 72/94 (76.60%), Query Frame = 0


Query: 1  MSQFHKSDQQKVLEAPEAPEYGDRSTEE-GSGEALKAAEHDDGESCQTPTSPQHRIPIAQ 60
          MSQFHKSD QKV E P+ PE GDRS EE G GEA+  +    GESC+TPTS +HRIP A+
Sbjct: 1  MSQFHKSDHQKVKEPPKPPEEGDRSKEEDGGGEAVDCS----GESCRTPTSLRHRIPTAR 60

Query: 61 SCPTTPRKQRVVRKRKFSDQSFFEATGRGEITEL 93
          S PTTPRK+++  KRKFSDQSFFE TGRGE+  L
Sbjct: 61 SYPTTPRKRKIASKRKFSDQSFFEVTGRGEVESL 90

[Close]

BLAST of Chy12G213540 vs. NCBI nr
Match: KAG6586014.1 (hypothetical protein SDJN03_18747, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037379.1 hypothetical protein SDJN02_01004, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 108 bits (270), Expect = 3.25e-28
Identity = 58/93 (62.37%), Postives = 68/93 (73.12%), Query Frame = 0


Query: 1  MSQFHKSDQQKVLEAPEAPEYGDRSTEEGSGEALKAAEHDDGESCQTPTSPQHRIPIAQS 60
          MS+F  SD QK LE  +  E  DRS EE  GEAL A E   GESC+TP+S +HRIP A+S
Sbjct: 1  MSEFQNSDHQKSLEPQKPAEEVDRSKEEDGGEALLAVEDGGGESCRTPSSLKHRIPAARS 60

Query: 61 CPTTPRKQRVVRKRKFSDQSFFEATGRGEITEL 93
          CPTTPRK++VV KRKFSDQSFFE+T R E+  L
Sbjct: 61 CPTTPRKKKVVSKRKFSDQSFFESTRREEVESL 93

The following BLAST results are available for this feature:

BLAST of Chy12G213540 vs.


Match Name	E-value	Identity	Description

BLAST of Chy12G213540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LV74	4.9e-40	96.63	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G135270 PE=4 SV=1	[more]
A0A5D3BHE9	1.4e-34	83.87	Cyclin-dependent protein kinase inhibitor SMR2 OS=Cucumis melo var. makuwa OX=11...	[more]
A0A2H5Q221	3.8e-08	55.88	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_188970 PE=4 SV=1	[more]
A0A067F2H9	4.9e-08	55.88	Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g0381851...	[more]
V4RSW1	4.9e-08	55.88	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10029845mg PE=4 ...	[more]

BLAST of Chy12G213540 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8652786.1	6.65e-55	95.65	hypothetical protein Csa_022878 [Cucumis sativus]	[more]
KAA0052125.1	1.22e-46	83.87	cyclin-dependent protein kinase inhibitor SMR2 [Cucumis melo var. makuwa] >TYJ98...	[more]
KAG6583595.1	2.70e-31	67.02	hypothetical protein SDJN03_19527, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7019295.1	2.70e-31	65.96	hypothetical protein SDJN02_18255, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6586014.1	3.25e-28	62.37	hypothetical protein SDJN03_18747, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Chy12G213540 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..66
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..42
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..74
None	No IPR available	PANTHER	PTHR33142:SF13	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR2-LIKE	coord: 1..90
IPR040389	Cyclin-dependent protein kinase inhibitor SMR	PANTHER	PTHR33142	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR13	coord: 1..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy12G213540.1	Chy12G213540.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032875	regulation of DNA endoreduplication