Chy12G213530 (gene) Cucumber (hystrix) v1

Overview


Name	Chy12G213530
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	histone H2B type 1-A-like
Location	chrH12: 11574742 .. 11575757 (-)
RNA-Seq Expression	Chy12G213530
Synteny	Chy12G213530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGCCGAGGCGATCCCGTAGAGTCGTCGGTTCTGTCGTCCGGACAACCACAAGAGTAGTTGAAGAAACCGTACAAGTAGCGGTTGTGGAGAAAGAGAGCCAAGATTTAACTCAAGAACCTGACACGGCAGAAACCCCCTACGGTGGCGGTGAAGTATTCCGGAGGACTGTCCCGGTGGAAGAGATTAAGGCTCATCCACAACAGCCGATAACTCATCCAGTGTCTGAAGATTTCGAGTTGAGAAGGGCAACAGATTCGACTTCGCAGCTGACTGAGGACACCGCGGTGACTCCGGAGATGGAACCCGAGGTCCGGAAAGGTTAGACTTAAGAGTATTGATATAATTTAACATGATATTATTATAGTTATATCAATTTTTGACAATGAATTTGTAAGTGACATCAATTTGAACACTTTTTACTTTCATCCCACTAATTTTATAACAACCAACAAATTTTCACTCATTAATGCATGTAGTTTCATATTGTATATGTTTTATAATTAATTGAACACATAAAGGTGTAGCAAACATAGCCATCAAGTCCAAATATATAGAACAACGAATTTGCAGATATAATTATGTTTGAGTTGAATGAATAGGAAAAAAAGGTGGGAGAAGGAGGAAGAAGAAGCAGAAGAAAAGGGAAATTAAGGAAGGAAAAAGGAGAAGAAAAAATAGTGGTGGTGGTGGTGGAAGAGAGGGATATAAGAGGTATGTGTTCAAGGTGTTGAAGCAAGTTCATCCAGACGTAGGAATTTCAGGACAAGCTATGCTTATTTTGAATAATTTCATGAATGATATGTTTCAAAGACTTGCAGAAGAGGCAACCAAACTCTCCAAATATACAGGTATATATATATATATTCAAATTATTATACAATCATTTTTATTATTATTTTATTAATATTATAATAAATTAATTGATAGGTGGAATGACCCTGTCGTCAAGGGAAATACAGGGGGCGGTGAGGTTGGTGTTACCCGGGGAGCTGGGGAAGCACGCCATTGCTGA

mRNA sequence

ATGCCGCCGAGGCGATCCCGTAGAGTCGTCGGTTCTGTCGTCCGGACAACCACAAGAGTAGTTGAAGAAACCGTACAAGTAGCGGTTGTGGAGAAAGAGAGCCAAGATTTAACTCAAGAACCTGACACGGCAGAAACCCCCTACGGTGGCGGTGAAGTATTCCGGAGGACTGTCCCGGTGGAAGAGATTAAGGCTCATCCACAACAGCCGATAACTCATCCAGTGTCTGAAGATTTCGAGTTGAGAAGGGCAACAGATTCGACTTCGCAGCTGACTGAGGACACCGCGGTGACTCCGGAGATGGAACCCGAGGTCCGGAAAGGGGGCGGTGAGGTTGGTGTTACCCGGGGAGCTGGGGAAGCACGCCATTGCTGA

Coding sequence (CDS)

ATGCCGCCGAGGCGATCCCGTAGAGTCGTCGGTTCTGTCGTCCGGACAACCACAAGAGTAGTTGAAGAAACCGTACAAGTAGCGGTTGTGGAGAAAGAGAGCCAAGATTTAACTCAAGAACCTGACACGGCAGAAACCCCCTACGGTGGCGGTGAAGTATTCCGGAGGACTGTCCCGGTGGAAGAGATTAAGGCTCATCCACAACAGCCGATAACTCATCCAGTGTCTGAAGATTTCGAGTTGAGAAGGGCAACAGATTCGACTTCGCAGCTGACTGAGGACACCGCGGTGACTCCGGAGATGGAACCCGAGGTCCGGAAAGGGGGCGGTGAGGTTGGTGTTACCCGGGGAGCTGGGGAAGCACGCCATTGCTGA

Protein sequence

MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAETPYGGGEVFRRTVPVEEIKAHPQQPITHPVSEDFELRRATDSTSQLTEDTAVTPEMEPEVRKGGGEVGVTRGAGEARHC*

Homology

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BLAST of Chy12G213530 vs. ExPASy TrEMBL
Match: A0A0A0LSH9 (Histone domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G136770 PE=3 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 6.9e-47
Identity = 102/108 (94.44%), Postives = 106/108 (98.15%), Query Frame = 0


Query: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAETPYGGGEVFRRTVPV 60
           MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPD AETP GGGE+FRRTVPV
Sbjct: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPDGGGEMFRRTVPV 60

Query: 61  EEIKAHPQQPITHPVSEDFELRRATDSTSQLTEDTAVTPEMEPEVRKG 109
           EEIKAHPQQPI+HPVSEDFELRRATDSTSQLTEDTAVTPEMEP++RKG
Sbjct: 61  EEIKAHPQQPISHPVSEDFELRRATDSTSQLTEDTAVTPEMEPKIRKG 108

[Close]

BLAST of Chy12G213530 vs. ExPASy TrEMBL
Match: A0A1S3CH74 (histone H2B type 1-A-like OS=Cucumis melo OX=3656 GN=LOC103500693 PE=3 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 3.0e-42
Identity = 98/110 (89.09%), Postives = 104/110 (94.55%), Query Frame = 0


Query: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAETPYGGGEVFRRTVPV 60
           MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAET  GGGE+FRR VPV
Sbjct: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAETADGGGEMFRRPVPV 60

Query: 61  EEIKA--HPQQPITHPVSEDFELRRATDSTSQLTEDTAVTPEMEPEVRKG 109
           EEIK+   P+QPITHPVSE+FE+RRATDSTSQLTEDTAVTPEMEPEV+KG
Sbjct: 61  EEIKSPDPPEQPITHPVSENFEVRRATDSTSQLTEDTAVTPEMEPEVQKG 110

[Close]

BLAST of Chy12G213530 vs. ExPASy TrEMBL
Match: A0A5D3BHX3 (Histone H2B type 1-A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold565G00310 PE=3 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 3.3e-41
Identity = 97/109 (88.99%), Postives = 102/109 (93.58%), Query Frame = 0


Query: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAETPYGGGEVFRRTVPV 60
           MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAET  GGGE+FRR VPV
Sbjct: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAETADGGGEMFRRPVPV 60

Query: 61  EEIKA--HPQQPITHPVSEDFELRRATDSTSQLTEDTAVTPEMEPEVRK 108
           EEIK+   P+QPITHPVSE+FE+RRATDSTSQLTEDTAVTPEMEPEV K
Sbjct: 61  EEIKSPDPPEQPITHPVSENFEVRRATDSTSQLTEDTAVTPEMEPEVLK 109

[Close]

BLAST of Chy12G213530 vs. ExPASy TrEMBL
Match: A0A5A7UF12 (Histone H2B type 1-A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold578G00860 PE=3 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 2.2e-40
Identity = 95/106 (89.62%), Postives = 100/106 (94.34%), Query Frame = 0


Query: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAETPYGGGEVFRRTVPV 60
           MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAET  GGGE+FRR VPV
Sbjct: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAETADGGGEMFRRPVPV 60

Query: 61  EEIKA--HPQQPITHPVSEDFELRRATDSTSQLTEDTAVTPEMEPE 105
           EEIK+   P+QPITHPVSE+FE+RRATDSTSQLTEDTAVTPEMEPE
Sbjct: 61  EEIKSPDPPEQPITHPVSENFEVRRATDSTSQLTEDTAVTPEMEPE 106

[Close]

BLAST of Chy12G213530 vs. ExPASy TrEMBL
Match: A0A6J1FGB7 (histone H2B.1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111443927 PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.6e-22
Identity = 70/108 (64.81%), Postives = 80/108 (74.07%), Query Frame = 0


Query: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAETPYGGGEVFRRTVPV 60
           MPPRRSRR+VGSVVRTTT+VVEETV VAVVE ESQD+TQEP TAET  GG  VFRRT+PV
Sbjct: 1   MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAET--GGDGVFRRTIPV 60

Query: 61  EEIKAHPQQPITHPVSEDFELRRATDSTSQLTEDTAVTPEMEPEVRKG 109
           E+       P T PV  D +L R  DSTS++TED  VT +ME + R G
Sbjct: 61  ED-------PQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARDG 99

[Close]

BLAST of Chy12G213530 vs. NCBI nr
Match: XP_031736247.1 (histone H2B [Cucumis sativus] >KGN64870.1 hypothetical protein Csa_022747 [Cucumis sativus])

HSP 1 Score: 195 bits (496), Expect = 2.43e-60
Identity = 102/108 (94.44%), Postives = 106/108 (98.15%), Query Frame = 0


Query: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAETPYGGGEVFRRTVPV 60
           MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPD AETP GGGE+FRRTVPV
Sbjct: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPDGGGEMFRRTVPV 60

Query: 61  EEIKAHPQQPITHPVSEDFELRRATDSTSQLTEDTAVTPEMEPEVRKG 108
           EEIKAHPQQPI+HPVSEDFELRRATDSTSQLTEDTAVTPEMEP++RKG
Sbjct: 61  EEIKAHPQQPISHPVSEDFELRRATDSTSQLTEDTAVTPEMEPKIRKG 108

[Close]

BLAST of Chy12G213530 vs. NCBI nr
Match: XP_008462313.1 (PREDICTED: histone H2B type 1-A-like [Cucumis melo])

HSP 1 Score: 180 bits (456), Expect = 2.82e-54
Identity = 98/110 (89.09%), Postives = 104/110 (94.55%), Query Frame = 0


Query: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAETPYGGGEVFRRTVPV 60
           MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAET  GGGE+FRR VPV
Sbjct: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAETADGGGEMFRRPVPV 60

Query: 61  EEIKAH--PQQPITHPVSEDFELRRATDSTSQLTEDTAVTPEMEPEVRKG 108
           EEIK+   P+QPITHPVSE+FE+RRATDSTSQLTEDTAVTPEMEPEV+KG
Sbjct: 61  EEIKSPDPPEQPITHPVSENFEVRRATDSTSQLTEDTAVTPEMEPEVQKG 110

[Close]

BLAST of Chy12G213530 vs. NCBI nr
Match: TYJ98095.1 (histone H2B type 1-A-like [Cucumis melo var. makuwa])

HSP 1 Score: 177 bits (448), Expect = 1.21e-53
Identity = 97/109 (88.99%), Postives = 102/109 (93.58%), Query Frame = 0


Query: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAETPYGGGEVFRRTVPV 60
           MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAET  GGGE+FRR VPV
Sbjct: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAETADGGGEMFRRPVPV 60

Query: 61  EEIKAH--PQQPITHPVSEDFELRRATDSTSQLTEDTAVTPEMEPEVRK 107
           EEIK+   P+QPITHPVSE+FE+RRATDSTSQLTEDTAVTPEMEPEV K
Sbjct: 61  EEIKSPDPPEQPITHPVSENFEVRRATDSTSQLTEDTAVTPEMEPEVLK 109

[Close]

BLAST of Chy12G213530 vs. NCBI nr
Match: KAA0052101.1 (histone H2B type 1-A-like [Cucumis melo var. makuwa])

HSP 1 Score: 174 bits (441), Expect = 1.63e-52
Identity = 95/106 (89.62%), Postives = 100/106 (94.34%), Query Frame = 0


Query: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAETPYGGGEVFRRTVPV 60
           MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAET  GGGE+FRR VPV
Sbjct: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAETADGGGEMFRRPVPV 60

Query: 61  EEIKAH--PQQPITHPVSEDFELRRATDSTSQLTEDTAVTPEMEPE 104
           EEIK+   P+QPITHPVSE+FE+RRATDSTSQLTEDTAVTPEMEPE
Sbjct: 61  EEIKSPDPPEQPITHPVSENFEVRRATDSTSQLTEDTAVTPEMEPE 106

[Close]

BLAST of Chy12G213530 vs. NCBI nr
Match: XP_038894659.1 (LOW QUALITY PROTEIN: histone H2B-like [Benincasa hispida])

HSP 1 Score: 154 bits (389), Expect = 3.54e-44
Identity = 84/109 (77.06%), Postives = 94/109 (86.24%), Query Frame = 0


Query: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAETPYG-GGEVFRRTVP 60
           MPPRRSRRVVGSVVRTTTR+VEETVQVAV+EKESQDLTQEP+T +T  G GG+VFRRT+P
Sbjct: 1   MPPRRSRRVVGSVVRTTTRMVEETVQVAVLEKESQDLTQEPETTQTAEGRGGDVFRRTIP 60

Query: 61  VEEIKAHPQQPITHPVSEDFELRRATDSTSQLTEDTAVTPEMEPEVRKG 108
           VEE     +QP T PVSEDF+ R+ TDSTSQLTEDTA TPE+EPEVR G
Sbjct: 61  VEEKAPPREQPKTFPVSEDFDTRKPTDSTSQLTEDTAATPEVEPEVRNG 109

The following BLAST results are available for this feature:

BLAST of Chy12G213530 vs.


Match Name	E-value	Identity	Description

BLAST of Chy12G213530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LSH9	6.9e-47	94.44	Histone domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G136770 PE=...	[more]
A0A1S3CH74	3.0e-42	89.09	histone H2B type 1-A-like OS=Cucumis melo OX=3656 GN=LOC103500693 PE=3 SV=1	[more]
A0A5D3BHX3	3.3e-41	88.99	Histone H2B type 1-A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A5A7UF12	2.2e-40	89.62	Histone H2B type 1-A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo...	[more]
A0A6J1FGB7	1.6e-22	64.81	histone H2B.1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111443927 PE=3...	[more]

BLAST of Chy12G213530 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031736247.1	2.43e-60	94.44	histone H2B [Cucumis sativus] >KGN64870.1 hypothetical protein Csa_022747 [Cucum...	[more]
XP_008462313.1	2.82e-54	89.09	PREDICTED: histone H2B type 1-A-like [Cucumis melo]	[more]
TYJ98095.1	1.21e-53	88.99	histone H2B type 1-A-like [Cucumis melo var. makuwa]	[more]
KAA0052101.1	1.63e-52	89.62	histone H2B type 1-A-like [Cucumis melo var. makuwa]	[more]
XP_038894659.1	3.54e-44	77.06	LOW QUALITY PROTEIN: histone H2B-like [Benincasa hispida]	[more]

BLAST of Chy12G213530 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..124

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy12G213530.1	Chy12G213530.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity