Chy12G213390 (gene) Cucumber (hystrix) v1

Overview


Name	Chy12G213390
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	CACTA en-spm transposon protein
Location	chrH12: 11267071 .. 11267232 (-)
RNA-Seq Expression	Chy12G213390
Synteny	Chy12G213390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGTCTGCAATAGCTCACATTCCTAGGAGACACGAGCACTCGAGGAATATCGAGCTAGAGCGATATGTTGCATTTCATGGAAAGATCTCCATATCGATTGCTCCAGGACAGGATAAGCCGATCTCCCCACACGTCGGACGCTTTAGCTGTACCATCGGCGTG

mRNA sequence

GGGTCTGCAATAGCTCACATTCCTAGGAGACACGAGCACTCGAGGAATATCGAGCTAGAGCGATATGTTGCATTTCATGGAAAGATCTCCATATCGATTGCTCCAGGACAGGATAAGCCGATCTCCCCACACGTCGGACGCTTTAGCTGTACCATCGGCGTG

Coding sequence (CDS)

GGGTCTGCAATAGCTCACATTCCTAGGAGACACGAGCACTCGAGGAATATCGAGCTAGAGCGATATGTTGCATTTCATGGAAAGATCTCCATATCGATTGCTCCAGGACAGGATAAGCCGATCTCCCCACACGTCGGACGCTTTAGCTGTACCATCGGCGTG

Protein sequence

GSAIAHIPRRHEHSRNIELERYVAFHGKISISIAPGQDKPISPHVGRFSCTIGV

Homology

[Close]

BLAST of Chy12G213390 vs. ExPASy TrEMBL
Match: A0A5D3CIG3 ((R)-mandelonitrile lyase 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold107G00470 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.2e-10
Identity = 36/51 (70.59%), Postives = 40/51 (78.43%), Query Frame = 0


Query: 4  IAHIPRRHEHSRNIELERYVAFHGKISISIAPGQDKPISPHVGRFSCTIGV 55
          +A  PRR EHSRN+EL+RYVA +GKI ISI PGQDK ISPHV  FS T GV
Sbjct: 42 VARTPRRCEHSRNLELDRYVAQNGKILISIVPGQDKRISPHVVHFSNTFGV 92

[Close]

BLAST of Chy12G213390 vs. ExPASy TrEMBL
Match: A0A5A7UNR1 ((R)-mandelonitrile lyase 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1503G00210 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.1e-09
Identity = 36/50 (72.00%), Postives = 40/50 (80.00%), Query Frame = 0


Query: 5   AHIPRRHEHSRNIELERYVAFHGKISISIAPGQDKPISPHVGRFSCTIGV 55
           AH PRR EHSRN+EL+RYVA + KI ISIAPGQDK IS HV RF+ TI V
Sbjct: 72  AHTPRRREHSRNLELDRYVAQNKKILISIAPGQDKSISLHVVRFNNTIDV 121

[Close]

BLAST of Chy12G213390 vs. ExPASy TrEMBL
Match: A0A1S4E4L2 (uncharacterized protein LOC107992057 OS=Cucumis melo OX=3656 GN=LOC107992057 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.9e-09
Identity = 35/51 (68.63%), Postives = 40/51 (78.43%), Query Frame = 0


Query: 4   IAHIPRRHEHSRNIELERYVAFHGKISISIAPGQDKPISPHVGRFSCTIGV 55
           +A  PRR EHSRN+EL+RYVA +GKI I I PGQDK ISP+V  FS TIGV
Sbjct: 294 VARTPRRCEHSRNLELDRYVAQNGKILIFIVPGQDKRISPYVVHFSNTIGV 344

[Close]

BLAST of Chy12G213390 vs. ExPASy TrEMBL
Match: A0A5A7T8Z6 ((R)-mandelonitrile lyase 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G002880 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 9.4e-09
Identity = 33/50 (66.00%), Postives = 39/50 (78.00%), Query Frame = 0


Query: 5   AHIPRRHEHSRNIELERYVAFHGKISISIAPGQDKPISPHVGRFSCTIGV 55
           A  P+R +HSRN+EL+RYVA +G  SISIAPG+DKPISPHV  F  TI V
Sbjct: 112 APTPKRRQHSRNLELDRYVAQNGMTSISIAPGRDKPISPHVLHFINTIDV 161

[Close]

BLAST of Chy12G213390 vs. ExPASy TrEMBL
Match: A0A5D3DAJ0 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G001110 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 9.4e-09
Identity = 33/50 (66.00%), Postives = 39/50 (78.00%), Query Frame = 0


Query: 5   AHIPRRHEHSRNIELERYVAFHGKISISIAPGQDKPISPHVGRFSCTIGV 55
           A  P+R +HSRN+EL+RYVA +G  SISIAPG+DKPISPHV  F  TI V
Sbjct: 112 APTPKRRQHSRNLELDRYVAQNGMTSISIAPGRDKPISPHVLHFINTIDV 161

[Close]

BLAST of Chy12G213390 vs. NCBI nr
Match: KAA0063738.1 ((R)-mandelonitrile lyase 1-like [Cucumis melo var. makuwa] >TYK10964.1 (R)-mandelonitrile lyase 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 72.4 bits (176), Expect = 1.24e-13
Identity = 36/51 (70.59%), Postives = 40/51 (78.43%), Query Frame = 0


Query: 4  IAHIPRRHEHSRNIELERYVAFHGKISISIAPGQDKPISPHVGRFSCTIGV 54
          +A  PRR EHSRN+EL+RYVA +GKI ISI PGQDK ISPHV  FS T GV
Sbjct: 42 VARTPRRCEHSRNLELDRYVAQNGKILISIVPGQDKRISPHVVHFSNTFGV 92

[Close]

BLAST of Chy12G213390 vs. NCBI nr
Match: KAA0057523.1 ((R)-mandelonitrile lyase 1-like [Cucumis melo var. makuwa] >TYK08205.1 (R)-mandelonitrile lyase 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 70.1 bits (170), Expect = 6.29e-13
Identity = 36/50 (72.00%), Postives = 40/50 (80.00%), Query Frame = 0


Query: 5   AHIPRRHEHSRNIELERYVAFHGKISISIAPGQDKPISPHVGRFSCTIGV 54
           AH PRR EHSRN+EL+RYVA + KI ISIAPGQDK IS HV RF+ TI V
Sbjct: 72  AHTPRRREHSRNLELDRYVAQNKKILISIAPGQDKSISLHVVRFNNTIDV 121

[Close]

BLAST of Chy12G213390 vs. NCBI nr
Match: TYK11949.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 66.6 bits (161), Expect = 3.95e-12
Identity = 30/47 (63.83%), Postives = 38/47 (80.85%), Query Frame = 0


Query: 8  PRRHEHSRNIELERYVAFHGKISISIAPGQDKPISPHVGRFSCTIGV 54
          PRRH H R +ELER++A +G+I ++IAPG +KPISPHV RFS  IGV
Sbjct: 36 PRRHAHCRLLELERHIAINGRIPMTIAPGAEKPISPHVVRFSQAIGV 82

[Close]

BLAST of Chy12G213390 vs. NCBI nr
Match: XP_031741168.1 (uncharacterized protein LOC116403757 [Cucumis sativus])

HSP 1 Score: 67.4 bits (163), Expect = 5.11e-12
Identity = 32/48 (66.67%), Postives = 37/48 (77.08%), Query Frame = 0


Query: 5  AHIPRRHEHSRNIELERYVAFHGKISISIAPGQDKPISPHVGRFSCTI 52
          A  PRR EHSRN++L+RYV  +GKI ISI P +DKPISPH   FSCTI
Sbjct: 41 ARTPRRREHSRNLKLDRYVQQNGKIPISIVPRKDKPISPHAIIFSCTI 88

[Close]

BLAST of Chy12G213390 vs. NCBI nr
Match: XP_016903164.1 (PREDICTED: uncharacterized protein LOC107992057 [Cucumis melo])

HSP 1 Score: 69.3 bits (168), Expect = 5.34e-12
Identity = 35/51 (68.63%), Postives = 40/51 (78.43%), Query Frame = 0


Query: 4   IAHIPRRHEHSRNIELERYVAFHGKISISIAPGQDKPISPHVGRFSCTIGV 54
           +A  PRR EHSRN+EL+RYVA +GKI I I PGQDK ISP+V  FS TIGV
Sbjct: 294 VARTPRRCEHSRNLELDRYVAQNGKILIFIVPGQDKRISPYVVHFSNTIGV 344

The following BLAST results are available for this feature:

BLAST of Chy12G213390 vs.


Match Name	E-value	Identity	Description

BLAST of Chy12G213390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CIG3	2.2e-10	70.59	(R)-mandelonitrile lyase 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5A7UNR1	1.1e-09	72.00	(R)-mandelonitrile lyase 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S4E4L2	1.9e-09	68.63	uncharacterized protein LOC107992057 OS=Cucumis melo OX=3656 GN=LOC107992057 PE=...	[more]
A0A5A7T8Z6	9.4e-09	66.00	(R)-mandelonitrile lyase 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5D3DAJ0	9.4e-09	66.00	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]

BLAST of Chy12G213390 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0063738.1	1.24e-13	70.59	(R)-mandelonitrile lyase 1-like [Cucumis melo var. makuwa] >TYK10964.1 (R)-mande...	[more]
KAA0057523.1	6.29e-13	72.00	(R)-mandelonitrile lyase 1-like [Cucumis melo var. makuwa] >TYK08205.1 (R)-mande...	[more]
TYK11949.1	3.95e-12	63.83	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
XP_031741168.1	5.11e-12	66.67	uncharacterized protein LOC116403757 [Cucumis sativus]	[more]
XP_016903164.1	5.34e-12	68.63	PREDICTED: uncharacterized protein LOC107992057 [Cucumis melo]	[more]

BLAST of Chy12G213390 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy12G213390.1	Chy12G213390.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0016829	lyase activity