Chy12G212990 (gene) Cucumber (hystrix) v1

Overview


Name	Chy12G212990
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH12: 10222421 .. 10223483 (-)
RNA-Seq Expression	Chy12G212990
Synteny	Chy12G212990

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTTGCTGTTTGTTTCTTCTTGCGTTTCTGGGGATCCTTTACCCATACAATCGAGGATCACTATTCACTTCCATTGTTTTGATCTATTCTCTTACATCTGTGGTTTCTGGGTATATATCTGCTTCTTTCCACTGCCAGTTTGCCGAGATTGGATGGGTATATTTTCCTTGTGTTAACTCTATTATATATTTTTTTGCCATATTCTTTTAGTAACGTGATCTTTTGCCATTTCCTTCTCTCTTTTGATTTCAACTTTGTATTTGCAGGAGAGAAGTGTTATTTTATCTGGCATTCTGTATTTGGGACCATCATTCGTCATAATTTCTATCCTAAATATTGTTGCTATATCTAATGGAACTACTGCAGCATTGCCTATTGGCACCATCATAGTGATTCTGCTCATATATATTTTTATCAGCCTCCCATTGCTTGTATTTGGTGGTATAATAGGACGCCGCTTTAGATCCGAGTTTCAAGCGCCTTGTGCCACCAAGCGAAACCCACGAGAGATTCCTCCTCTGGCCTGGTTCAGAAAACTTCCATGTCAAATGTTCATTAGTGGACTGCTGTCATTCAGTGCAGTTGTTCTTGAATTACATCATTTATATGCAAGCATGTGGGGATTTAAAATTTTCACTCTTCCTAGCATTTTATTCATCACATTCATCATCCTAGACATTCTCACTGCGATCTTAAGCGTCAGTTTAACTTACATTCAGCTATCAGTTGAAGATCATCAATGGTGGTGGAGGTATCTATTATATTATGTCCAACCTTCATGATGCATGTTTGTTCTTTTTTAGACTGTCATCCATTTTATAATTACCGCCTTTTTGACTTTTCAGATCTGTGTTCTCCGGTGGTTCAACTGCCGTCTTTATGTTTGGATATTGCATATACTTCTACGCCAGATCAAATATGAATGGTTTCTTGCAGCTATGCTTCTTCATAGGATATAATGCTTGTATATGCTACGCATTCTTCCTGATGCTAGGAGTTATAAGTTTTCGTGTTTCCTTGATTTTTGTTCGTCGTATTTACGACGCGGTCAAAAGTGAATGA

mRNA sequence

GTTTTGCTGTTTGTTTCTTCTTGCGTTTCTGGGGATCCTTTACCCATACAATCGAGGATCACTATTCACTTCCATTGTTTTGATCTATTCTCTTACATCTGTGGTTTCTGGGTATATATCTGCTTCTTTCCACTGCCAGTTTGCCGAGATTGGATGGGAGAGAAGTGTTATTTTATCTGGCATTCTGTATTTGGGACCATCATTCGTCATAATTTCTATCCTAAATATTGTTGCTATATCTAATGGAACTACTGCAGCATTGCCTATTGGCACCATCATAGTGATTCTGCTCATATATATTTTTATCAGCCTCCCATTGCTTGTATTTGGTGGTATAATAGGACGCCGCTTTAGATCCGAGTTTCAAGCGCCTTGTGCCACCAAGCGAAACCCACGAGAGATTCCTCCTCTGGCCTGGTTCAGAAAACTTCCATGTCAAATGTTCATTAGTGGACTGCTGTCATTCAGTGCAGTTGTTCTTGAATTACATCATTTATATGCAAGCATGTGGGGATTTAAAATTTTCACTCTTCCTAGCATTTTATTCATCACATTCATCATCCTAGACATTCTCACTGCGATCTTAAGCGTCAGTTTAACTTACATTCAGCTATCAGTTGAAGATCATCAATGGTGGTGGAGATCTGTGTTCTCCGGTGGTTCAACTGCCGTCTTTATGTTTGGATATTGCATATACTTCTACGCCAGATCAAATATGAATGGTTTCTTGCAGCTATGCTTCTTCATAGGATATAATGCTTGTATATGCTACGCATTCTTCCTGATGCTAGGAGTTATAAGTTTTCGTGTTTCCTTGATTTTTGTTCGTCGTATTTACGACGCGGTCAAAAGTGAATGA

Coding sequence (CDS)

GTTTTGCTGTTTGTTTCTTCTTGCGTTTCTGGGGATCCTTTACCCATACAATCGAGGATCACTATTCACTTCCATTGTTTTGATCTATTCTCTTACATCTGTGGTTTCTGGGTATATATCTGCTTCTTTCCACTGCCAGTTTGCCGAGATTGGATGGGAGAGAAGTGTTATTTTATCTGGCATTCTGTATTTGGGACCATCATTCGTCATAATTTCTATCCTAAATATTGTTGCTATATCTAATGGAACTACTGCAGCATTGCCTATTGGCACCATCATAGTGATTCTGCTCATATATATTTTTATCAGCCTCCCATTGCTTGTATTTGGTGGTATAATAGGACGCCGCTTTAGATCCGAGTTTCAAGCGCCTTGTGCCACCAAGCGAAACCCACGAGAGATTCCTCCTCTGGCCTGGTTCAGAAAACTTCCATGTCAAATGTTCATTAGTGGACTGCTGTCATTCAGTGCAGTTGTTCTTGAATTACATCATTTATATGCAAGCATGTGGGGATTTAAAATTTTCACTCTTCCTAGCATTTTATTCATCACATTCATCATCCTAGACATTCTCACTGCGATCTTAAGCGTCAGTTTAACTTACATTCAGCTATCAGTTGAAGATCATCAATGGTGGTGGAGATCTGTGTTCTCCGGTGGTTCAACTGCCGTCTTTATGTTTGGATATTGCATATACTTCTACGCCAGATCAAATATGAATGGTTTCTTGCAGCTATGCTTCTTCATAGGATATAATGCTTGTATATGCTACGCATTCTTCCTGATGCTAGGAGTTATAAGTTTTCGTGTTTCCTTGATTTTTGTTCGTCGTATTTACGACGCGGTCAAAAGTGAATGA

Protein sequence

VLLFVSSCVSGDPLPIQSRITIHFHCFDLFSYICGFWVYICFFPLPVCRDWMGEKCYFIWHSVFGTIIRHNFYPKYCCYI*WNYCSIAYWHHHSDSAHIYFYQPPIACIWWYNRTPL*IRVSSALCHQAKPTRDSSSGLVQKTSMSNVH*WTAVIQCSCS*ITSFICKHVGI*NFHSS*HFIHHIHHPRHSHCDLKRQFNLHSAIS*RSSMVVEICVLRWFNCRLYVWILHILLRQIKYEWFLAAMLLHRI*CLYMLRILPDARSYKFSCFLDFCSSYLRRGQK*MX

Homology

[Close]

BLAST of Chy12G212990 vs. ExPASy TrEMBL
Match: A0A6A3CZI5 (Transmembrane 9 superfamily member OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00000715pilonHSYRG00343 PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.5e-04
Identity = 34/76 (44.74%), Postives = 48/76 (63.16%), Query Frame = 0


Query: 204 AIS*RSSMVVEICVLRWFNCRLYVWILHILLRQIKYEWFLAAMLLHRI*CLYMLRILPDA 263
           AI  RSSMVVEIC +   N   +V + ++LLR+IK+EW +A  +  R+ CL++L IL DA
Sbjct: 204 AICGRSSMVVEICAVWGINLYFHVCLWYLLLRKIKHEWLIAIFIRCRLQCLHVLCILLDA 263

Query: 264 RSYKFSCFLDFCSSYL 280
              +   FLD  S +L
Sbjct: 264 WHSRLPFFLDVRSLHL 279

[Close]

BLAST of Chy12G212990 vs. ExPASy TrEMBL
Match: A0A7J7E076 (Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW02G00743 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 5.7e-04
Identity = 23/51 (45.10%), Postives = 33/51 (64.71%), Query Frame = 0


Query: 3   LFVSSCVSGDPLPIQSRITIHFHCFDLFSYICGFWVYICFFPLPVCRDWMG 54
           L +SS +S   L +QS  ++HF  F ++SYIC +W+Y  F P  VC +WMG
Sbjct: 51  LLISSSISWCSLSLQSWSSVHFSHFHIYSYICYWWIYCSFLPQSVCHNWMG 101

[Close]

BLAST of Chy12G212990 vs. NCBI nr
Match: KAF5751726.1 (hypothetical protein HS088_TW02G00743 [Tripterygium wilfordii])

HSP 1 Score: 55.1 bits (131), Expect = 1.01e-05
Identity = 23/51 (45.10%), Postives = 33/51 (64.71%), Query Frame = 0


Query: 3   LFVSSCVSGDPLPIQSRITIHFHCFDLFSYICGFWVYICFFPLPVCRDWMG 53
           L +SS +S   L +QS  ++HF  F ++SYIC +W+Y  F P  VC +WMG
Sbjct: 51  LLISSSISWCSLSLQSWSSVHFSHFHIYSYICYWWIYCSFLPQSVCHNWMG 101

[Close]

BLAST of Chy12G212990 vs. NCBI nr
Match: KAE8734833.1 (Detected protein of confused Function [Hibiscus syriacus])

HSP 1 Score: 56.6 bits (135), Expect = 3.53e-05
Identity = 34/76 (44.74%), Postives = 48/76 (63.16%), Query Frame = 0


Query: 204 AIS*RSSMVVEICVLRWFNCRLYVWILHILLRQIKYEWFLAAMLLHRI*CLYMLRILPDA 263
           AI  RSSMVVEIC +   N   +V + ++LLR+IK+EW +A  +  R+ CL++L IL DA
Sbjct: 204 AICGRSSMVVEICAVWGINLYFHVCLWYLLLRKIKHEWLIAIFIRCRLQCLHVLCILLDA 263

Query: 264 RSYKFSCFLDFCSSYL 279
              +   FLD  S +L
Sbjct: 264 WHSRLPFFLDVRSLHL 279

The following BLAST results are available for this feature:

BLAST of Chy12G212990 vs.


Match Name	E-value	Identity	Description

BLAST of Chy12G212990 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6A3CZI5	1.5e-04	44.74	Transmembrane 9 superfamily member OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00...	[more]
A0A7J7E076	5.7e-04	45.10	Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW02G00743 ...	[more]

BLAST of Chy12G212990 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF5751726.1	1.01e-05	45.10	hypothetical protein HS088_TW02G00743 [Tripterygium wilfordii]	[more]
KAE8734833.1	3.53e-05	44.74	Detected protein of confused Function [Hibiscus syriacus]	[more]

BLAST of Chy12G212990 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy12G212990.1	Chy12G212990.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane