Chy12G212580 (gene) Cucumber (hystrix) v1

Overview


Name	Chy12G212580
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Pentatricopeptide repeat-containing protein
Location	chrH12: 9449689 .. 9451266 (-)
RNA-Seq Expression	Chy12G212580
Synteny	Chy12G212580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCAGCATTCCTTCCCACACAGCCACTCCTTCTCAACTCCAACAACCTCCTTTTACACCTTCTTCAATCCCACTTTCAAATCCAACAAAACTCAACTTCCCCCGCTCTCCCAACTTCCCTCATCGCAATATCTCCTCCAAATTCACCCCCAATTCTGTTGACCCCATTGTCCTATGGACCTCTTCTCTTGCTCGCTACTGCCGCAACGGCCAATTACCCGAAGCCGCTGCAGAGTTTACCCGCATGCGACTCGCCGGAGTTGAGCCCAACCACATCACATTTATTACGCTTCTCTCCGGCTGTTCTGATTTTCCGTCAGAAAGCTTTTTCTTCGCCTCTTCACTTCATGGCTACGCTTGTAAATTTGGTCTGGATACTGGGCATGTAATGGTGGGGACTGCTCTCATTGATATATATTCCAAATGTGCTCAATTGGGTCTTGCTAGGAAGGTTTTTTATTACCTGGGTGTGAAAAACTCTGTCTCTTGGAACACTATGCTCAATGGTTTTATGAGGAATGGGGAGATTGAGTTGGCCATTCAACTGTTTGATGAAATGCCTACAAGAGATGCAATTTCTTGGACGGCTTTAATTAACGGTCTTTTGAAACATGGTTACTCGGAACAAGCATTGGAGTGCTTCCATCAGATGCAACGCTCGGGTGTCGCTGCTGATTATGTGTCTATAATTGCTGTTCTTGCTGCTTGTGCTGATTTGGGTGCTCTTACTTTGGGGTTGTGGGTTCATCGTTTTGTTATGCCGCTGGAGTTTAAGGATAATATTAAGATTAGTAATTCCCTGATAGATATGTATTCTAGATGTGGATGTATTGAGTTTGCCCGCCAAGTGTTTGTGAAAATGGCCAAACGAACTTTGGTATCTTGGAACTCTATCATTGTGGGGTTTGCAGTTAATGGATTTGTAGATGAATCTTTAGAGTTTTTTTATGCGATGCAGAAGGAAGGATTCAAGCCAGATGGAGTAAGCTACACAGGGGCTCTTACCGCGTGTAGCCATGCTGGCTTAGTGAATAAGGGCCTGGAATTGTTTGATAACATGAAGAGTGTACACAAAATTACTCCTAGGATTGAGCATTATGGATGTATTGTCGATCTCTATGGTCGTGCTGGAAGGTTAGAGGATGCACTGAATGTGATTGAGGAAATGCCGATGAAGCCAAATGAAGTTGTGTTGGGGTCGTTGCTTGCCGCTTGCAGGACTCATGGTGATGTGAACCTGGCTGAAAGGTTAATGAAACATCTCTTTAAGTTAGATCCAGAAGGCGATTCATATTATGTGCTCCTTTCAAACATATATGCAGCAATTGGGAAGTGGGATGGTGCTAACAATATCAGGAGAACGATGAAAGCCCGTGGTGTGCAAAAAAAACCGGGTTATAGTTCTGTTGAAATTGATGGTAAGGTTCATGAATTTGTTGCAGGTGACAATTACCATGCTGATGCAGACAATATTTACTCAATGTTAGATTTGTTGTATCATGAACTAAAGGTGTGTGGATATGTTCCTGGTACTGATACCATTCTGAATACCAAAGAATCTAATAAGGACGATTGA

mRNA sequence

ATGAGCAGCATTCCTTCCCACACAGCCACTCCTTCTCAACTCCAACAACCTCCTTTTACACCTTCTTCAATCCCACTTTCAAATCCAACAAAACTCAACTTCCCCCGCTCTCCCAACTTCCCTCATCGCAATATCTCCTCCAAATTCACCCCCAATTCTGTTGACCCCATTGTCCTATGGACCTCTTCTCTTGCTCGCTACTGCCGCAACGGCCAATTACCCGAAGCCGCTGCAGAGTTTACCCGCATGCGACTCGCCGGAGTTGAGCCCAACCACATCACATTTATTACGCTTCTCTCCGGCTGTTCTGATTTTCCGTCAGAAAGCTTTTTCTTCGCCTCTTCACTTCATGGCTACGCTTGTAAATTTGGTCTGGATACTGGGCATGTAATGGTGGGGACTGCTCTCATTGATATATATTCCAAATGTGCTCAATTGGGTCTTGCTAGGAAGGTTTTTTATTACCTGGGTGTGAAAAACTCTGTCTCTTGGAACACTATGCTCAATGGTTTTATGAGGAATGGGGAGATTGAGTTGGCCATTCAACTGTTTGATGAAATGCCTACAAGAGATGCAATTTCTTGGACGGCTTTAATTAACGGTCTTTTGAAACATGGTTACTCGGAACAAGCATTGGAGTGCTTCCATCAGATGCAACGCTCGGGTGTCGCTGCTGATTATGTGTCTATAATTGCTGTTCTTGCTGCTTGTGCTGATTTGGGTGCTCTTACTTTGGGGTTGTGGGTTCATCGTTTTGTTATGCCGCTGGAGTTTAAGGATAATATTAAGATTAGTAATTCCCTGATAGATATGTATTCTAGATGTGGATGTATTGAGTTTGCCCGCCAAGTGTTTGTGAAAATGGCCAAACGAACTTTGGTATCTTGGAACTCTATCATTGTGGGGTTTGCAGTTAATGGATTTGTAGATGAATCTTTAGAGTTTTTTTATGCGATGCAGAAGGAAGGATTCAAGCCAGATGGAGTAAGCTACACAGGGGCTCTTACCGCGTGTAGCCATGCTGGCTTAGTGAATAAGGGCCTGGAATTGTTTGATAACATGAAGAGTGTACACAAAATTACTCCTAGGATTGAGCATTATGGATGTATTGTCGATCTCTATGGTCGTGCTGGAAGGTTAGAGGATGCACTGAATGTGATTGAGGAAATGCCGATGAAGCCAAATGAAGTTGTGTTGGGGTCGTTGCTTGCCGCTTGCAGGACTCATGGTGATGTGAACCTGGCTGAAAGGTTAATGAAACATCTCTTTAAGTTAGATCCAGAAGGCGATTCATATTATGTGCTCCTTTCAAACATATATGCAGCAATTGGGAAGTGGGATGGTGCTAACAATATCAGGAGAACGATGAAAGCCCGTGGTGTGCAAAAAAAACCGGGTTATAGTTCTGTTGAAATTGATGGTAAGGTTCATGAATTTGTTGCAGGTGACAATTACCATGCTGATGCAGACAATATTTACTCAATGTTAGATTTGTTGTATCATGAACTAAAGGTGTGTGGATATGTTCCTGGTACTGATACCATTCTGAATACCAAAGAATCTAATAAGGACGATTGA

Coding sequence (CDS)

ATGAGCAGCATTCCTTCCCACACAGCCACTCCTTCTCAACTCCAACAACCTCCTTTTACACCTTCTTCAATCCCACTTTCAAATCCAACAAAACTCAACTTCCCCCGCTCTCCCAACTTCCCTCATCGCAATATCTCCTCCAAATTCACCCCCAATTCTGTTGACCCCATTGTCCTATGGACCTCTTCTCTTGCTCGCTACTGCCGCAACGGCCAATTACCCGAAGCCGCTGCAGAGTTTACCCGCATGCGACTCGCCGGAGTTGAGCCCAACCACATCACATTTATTACGCTTCTCTCCGGCTGTTCTGATTTTCCGTCAGAAAGCTTTTTCTTCGCCTCTTCACTTCATGGCTACGCTTGTAAATTTGGTCTGGATACTGGGCATGTAATGGTGGGGACTGCTCTCATTGATATATATTCCAAATGTGCTCAATTGGGTCTTGCTAGGAAGGTTTTTTATTACCTGGGTGTGAAAAACTCTGTCTCTTGGAACACTATGCTCAATGGTTTTATGAGGAATGGGGAGATTGAGTTGGCCATTCAACTGTTTGATGAAATGCCTACAAGAGATGCAATTTCTTGGACGGCTTTAATTAACGGTCTTTTGAAACATGGTTACTCGGAACAAGCATTGGAGTGCTTCCATCAGATGCAACGCTCGGGTGTCGCTGCTGATTATGTGTCTATAATTGCTGTTCTTGCTGCTTGTGCTGATTTGGGTGCTCTTACTTTGGGGTTGTGGGTTCATCGTTTTGTTATGCCGCTGGAGTTTAAGGATAATATTAAGATTAGTAATTCCCTGATAGATATGTATTCTAGATGTGGATGTATTGAGTTTGCCCGCCAAGTGTTTGTGAAAATGGCCAAACGAACTTTGGTATCTTGGAACTCTATCATTGTGGGGTTTGCAGTTAATGGATTTGTAGATGAATCTTTAGAGTTTTTTTATGCGATGCAGAAGGAAGGATTCAAGCCAGATGGAGTAAGCTACACAGGGGCTCTTACCGCGTGTAGCCATGCTGGCTTAGTGAATAAGGGCCTGGAATTGTTTGATAACATGAAGAGTGTACACAAAATTACTCCTAGGATTGAGCATTATGGATGTATTGTCGATCTCTATGGTCGTGCTGGAAGGTTAGAGGATGCACTGAATGTGATTGAGGAAATGCCGATGAAGCCAAATGAAGTTGTGTTGGGGTCGTTGCTTGCCGCTTGCAGGACTCATGGTGATGTGAACCTGGCTGAAAGGTTAATGAAACATCTCTTTAAGTTAGATCCAGAAGGCGATTCATATTATGTGCTCCTTTCAAACATATATGCAGCAATTGGGAAGTGGGATGGTGCTAACAATATCAGGAGAACGATGAAAGCCCGTGGTGTGCAAAAAAAACCGGGTTATAGTTCTGTTGAAATTGATGGTAAGGTTCATGAATTTGTTGCAGGTGACAATTACCATGCTGATGCAGACAATATTTACTCAATGTTAGATTTGTTGTATCATGAACTAAAGGTGTGTGGATATGTTCCTGGTACTGATACCATTCTGAATACCAAAGAATCTAATAAGGACGATTGA

Protein sequence

MSSIPSHTATPSQLQQPPFTPSSIPLSNPTKLNFPRSPNFPHRNISSKFTPNSVDPIVLWTSSLARYCRNGQLPEAAAEFTRMRLAGVEPNHITFITLLSGCSDFPSESFFFASSLHGYACKFGLDTGHVMVGTALIDIYSKCAQLGLARKVFYYLGVKNSVSWNTMLNGFMRNGEIELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACADLGALTLGLWVHRFVMPLEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSIIVGFAVNGFVDESLEFFYAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKSVHKITPRIEHYGCIVDLYGRAGRLEDALNVIEEMPMKPNEVVLGSLLAACRTHGDVNLAERLMKHLFKLDPEGDSYYVLLSNIYAAIGKWDGANNIRRTMKARGVQKKPGYSSVEIDGKVHEFVAGDNYHADADNIYSMLDLLYHELKVCGYVPGTDTILNTKESNKDD*

Homology

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BLAST of Chy12G212580 vs. ExPASy Swiss-Prot
Match: Q9MA50 (Pentatricopeptide repeat-containing protein At1g05750, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PDE247 PE=2 SV=1)

HSP 1 Score: 578.9 bits (1491), Expect = 5.6e-164
Identity = 277/456 (60.75%), Postives = 350/456 (76.75%), Query Frame = 0


Query: 58  VLWTSSLARYCRNGQLPEAAAEFTRMRLAGVEPNHITFITLLSGCSDFPSESFFFASSLH 117
           V WTS +    RNG+L EAA EF+ M LAGVEPNHITFI LLSGC DF S S      LH
Sbjct: 37  VSWTSRINLLTRNGRLAEAAKEFSDMTLAGVEPNHITFIALLSGCGDFTSGSEALGDLLH 96

Query: 118 GYACKFGLDTGHVMVGTALIDIYSKCAQLGLARKVFYYLGVKNSVSWNTMLNGFMRNGEI 177
           GYACK GLD  HVMVGTA+I +YSK  +   AR VF Y+  KNSV+WNTM++G+MR+G++
Sbjct: 97  GYACKLGLDRNHVMVGTAIIGMYSKRGRFKKARLVFDYMEDKNSVTWNTMIDGYMRSGQV 156

Query: 178 ELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAAC 237
           + A ++FD+MP RD ISWTA+ING +K GY E+AL  F +MQ SGV  DYV+IIA L AC
Sbjct: 157 DNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFREMQISGVKPDYVAIIAALNAC 216

Query: 238 ADLGALTLGLWVHRFVMPLEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWN 297
            +LGAL+ GLWVHR+V+  +FK+N+++SNSLID+Y RCGC+EFARQVF  M KRT+VSWN
Sbjct: 217 TNLGALSFGLWVHRYVLSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFYNMEKRTVVSWN 276

Query: 298 SIIVGFAVNGFVDESLEFFYAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKSV 357
           S+IVGFA NG   ESL +F  MQ++GFKPD V++TGALTACSH GLV +GL  F  MK  
Sbjct: 277 SVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGALTACSHVGLVEEGLRYFQIMKCD 336

Query: 358 HKITPRIEHYGCIVDLYGRAGRLEDALNVIEEMPMKPNEVVLGSLLAACRTHG-DVNLAE 417
           ++I+PRIEHYGC+VDLY RAGRLEDAL +++ MPMKPNEVV+GSLLAAC  HG ++ LAE
Sbjct: 337 YRISPRIEHYGCLVDLYSRAGRLEDALKLVQSMPMKPNEVVIGSLLAACSNHGNNIVLAE 396

Query: 418 RLMKHLFKLDPEGDSYYVLLSNIYAAIGKWDGANNIRRTMKARGVQKKPGYSSVEIDGKV 477
           RLMKHL  L+ +  S YV+LSN+YAA GKW+GA+ +RR MK  G++K+PG+SS+EID  +
Sbjct: 397 RLMKHLTDLNVKSHSNYVILSNMYAADGKWEGASKMRRKMKGLGLKKQPGFSSIEIDDCM 456

Query: 478 HEFVAGDNYHADADNIYSMLDLLYHELKVCGYVPGT 513
           H F+AGDN H +   I  +L+L+  +L++ G V  T
Sbjct: 457 HVFMAGDNAHVETTYIREVLELISSDLRLQGCVVET 492

[Close]

BLAST of Chy12G212580 vs. ExPASy Swiss-Prot
Match: Q9LUJ2 (Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H56 PE=3 SV=1)

HSP 1 Score: 369.4 bits (947), Expect = 6.8e-101
Identity = 178/459 (38.78%), Postives = 283/459 (61.66%), Query Frame = 0


Query: 59  LWTSSLARYCRNGQLPEAAAEFTRMRLAGVEPNHITFITLLSGCSDFPSESFFFASSLHG 118
           L  +  + Y R G   EA   F  M  +GV P+ I+ ++ +S CS     +  +  S HG
Sbjct: 304 LCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQL--RNILWGKSCHG 363

Query: 119 YACKFGLDTGHVMVGTALIDIYSKCAQLGLARKVFYYLGVKNSVSWNTMLNGFMRNGEIE 178
           Y  + G ++    +  ALID+Y KC +   A ++F  +  K  V+WN+++ G++ NGE++
Sbjct: 364 YVLRNGFESWD-NICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVD 423

Query: 179 LAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQ-RSGVAADYVSIIAVLAAC 238
            A + F+ MP ++ +SW  +I+GL++    E+A+E F  MQ + GV AD V+++++ +AC
Sbjct: 424 AAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASAC 483

Query: 239 ADLGALTLGLWVHRFVMPLEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWN 298
             LGAL L  W++ ++     + ++++  +L+DM+SRCG  E A  +F  +  R + +W 
Sbjct: 484 GHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWT 543

Query: 299 SIIVGFAVNGFVDESLEFFYAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKSV 358
           + I   A+ G  + ++E F  M ++G KPDGV++ GALTACSH GLV +G E+F +M  +
Sbjct: 544 AAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKL 603

Query: 359 HKITPRIEHYGCIVDLYGRAGRLEDALNVIEEMPMKPNEVVLGSLLAACRTHGDVNLAER 418
           H ++P   HYGC+VDL GRAG LE+A+ +IE+MPM+PN+V+  SLLAACR  G+V +A  
Sbjct: 604 HGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAY 663

Query: 419 LMKHLFKLDPEGDSYYVLLSNIYAAIGKWDGANNIRRTMKARGVQKKPGYSSVEIDGKVH 478
             + +  L PE    YVLLSN+YA+ G+W+    +R +MK +G++K PG SS++I GK H
Sbjct: 664 AAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTH 723

Query: 479 EFVAGDNYHADADNIYSMLDLLYHELKVCGYVPGTDTIL 517
           EF +GD  H +  NI +MLD +       G+VP    +L
Sbjct: 724 EFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPDLSNVL 759

[Close]

BLAST of Chy12G212580 vs. ExPASy Swiss-Prot
Match: O82380 (Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H33 PE=2 SV=1)

HSP 1 Score: 360.5 bits (924), Expect = 3.2e-98
Identity = 170/476 (35.71%), Postives = 292/476 (61.34%), Query Frame = 0


Query: 49  FTPNSVDPIVLWTSSLARYCRNGQLPEAAAEFTRMRLAGVEPNHITFITLLSGCSDFPSE 108
           FT      +V W S +  + + G   +A   F +M    V+ +H+T + +LS C+     
Sbjct: 189 FTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKI--R 248

Query: 109 SFFFASSLHGYACKFGLDTGHVMVGTALIDIYSKCAQLGLARKVFYYLGVKNSVSWNTML 168
           +  F   +  Y  +  ++  ++ +  A++D+Y+KC  +  A+++F  +  K++V+W TML
Sbjct: 249 NLEFGRQVCSYIEENRVNV-NLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTML 308

Query: 169 NGFMRNGEIELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQ-RSGVAADY 228
           +G+  + + E A ++ + MP +D ++W ALI+   ++G   +AL  FH++Q +  +  + 
Sbjct: 309 DGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQ 368

Query: 229 VSIIAVLAACADLGALTLGLWVHRFVMPLEFKDNIKISNSLIDMYSRCGCIEFARQVFVK 288
           +++++ L+ACA +GAL LG W+H ++     + N  ++++LI MYS+CG +E +R+VF  
Sbjct: 369 ITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNS 428

Query: 289 MAKRTLVSWNSIIVGFAVNGFVDESLEFFYAMQKEGFKPDGVSYTGALTACSHAGLVNKG 348
           + KR +  W+++I G A++G  +E+++ FY MQ+   KP+GV++T    ACSH GLV++ 
Sbjct: 429 VEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEA 488

Query: 349 LELFDNMKSVHKITPRIEHYGCIVDLYGRAGRLEDALNVIEEMPMKPNEVVLGSLLAACR 408
             LF  M+S + I P  +HY CIVD+ GR+G LE A+  IE MP+ P+  V G+LL AC+
Sbjct: 489 ESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACK 548

Query: 409 THGDVNLAERLMKHLFKLDPEGDSYYVLLSNIYAAIGKWDGANNIRRTMKARGVQKKPGY 468
            H ++NLAE     L +L+P  D  +VLLSNIYA +GKW+  + +R+ M+  G++K+PG 
Sbjct: 549 IHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGC 608

Query: 469 SSVEIDGKVHEFVAGDNYHADADNIYSMLDLLYHELKVCGYVPGTDTILNTKESNK 524
           SS+EIDG +HEF++GDN H  ++ +Y  L  +  +LK  GY P    +L   E  +
Sbjct: 609 SSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEE 661

[Close]

BLAST of Chy12G212580 vs. ExPASy Swiss-Prot
Match: Q9SZT8 (Pentatricopeptide repeat-containing protein ELI1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ELI1 PE=3 SV=1)

HSP 1 Score: 359.0 bits (920), Expect = 9.2e-98
Identity = 177/476 (37.18%), Postives = 285/476 (59.87%), Query Frame = 0


Query: 53  SVDP-IVLWTSSLARYCRNGQLPEAAAEFTRMRLAGVEPNHITFITLLSGCSDFPSESFF 112
           ++DP + L+T+++     NG   +A   + ++  + + PN  TF +LL  CS    +   
Sbjct: 90  TIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLLKSCSTKSGK--- 149

Query: 113 FASSLHGYACKFGLDTGHVMVGTALIDIYSKCAQLGLARKVFYYLGVKNSVSWNTMLNGF 172
               +H +  KFGL      V T L+D+Y+K   +  A+KVF  +  ++ VS   M+  +
Sbjct: 150 ---LIHTHVLKFGLGI-DPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCY 209

Query: 173 MRNGEIELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSG-VAADYVSI 232
            + G +E A  LFD M  RD +SW  +I+G  +HG+   AL  F ++   G    D +++
Sbjct: 210 AKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITV 269

Query: 233 IAVLAACADLGALTLGLWVHRFVMPLEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAK 292
           +A L+AC+ +GAL  G W+H FV     + N+K+   LIDMYS+CG +E A  VF    +
Sbjct: 270 VAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPR 329

Query: 293 RTLVSWNSIIVGFAVNGFVDESLEFFYAMQK-EGFKPDGVSYTGALTACSHAGLVNKGLE 352
           + +V+WN++I G+A++G+  ++L  F  MQ   G +P  +++ G L AC+HAGLVN+G+ 
Sbjct: 330 KDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIR 389

Query: 353 LFDNMKSVHKITPRIEHYGCIVDLYGRAGRLEDALNVIEEMPMKPNEVVLGSLLAACRTH 412
           +F++M   + I P+IEHYGC+V L GRAG+L+ A   I+ M M  + V+  S+L +C+ H
Sbjct: 390 IFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLH 449

Query: 413 GDVNLAERLMKHLFKLDPEGDSYYVLLSNIYAAIGKWDGANNIRRTMKARGVQKKPGYSS 472
           GD  L + + ++L  L+ +    YVLLSNIYA++G ++G   +R  MK +G+ K+PG S+
Sbjct: 450 GDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGIST 509

Query: 473 VEIDGKVHEFVAGDNYHADADNIYSMLDLLYHELKVCGYVPGTDTILNTKESNKDD 526
           +EI+ KVHEF AGD  H+ +  IY+ML  +   +K  GYVP T+T+L   E  + +
Sbjct: 510 IEIENKVHEFRAGDREHSKSKEIYTMLRKISERIKSHGYVPNTNTVLQDLEETEKE 558

[Close]

BLAST of Chy12G212580 vs. ExPASy Swiss-Prot
Match: Q9LSB8 (Putative pentatricopeptide repeat-containing protein At3g15930 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E51 PE=3 SV=2)

HSP 1 Score: 355.5 bits (911), Expect = 1.0e-96
Identity = 161/462 (34.85%), Postives = 274/462 (59.31%), Query Frame = 0


Query: 55  DPIVLWTSSLARYCRNGQLPEAAAEFTRMRLAGVEPNHITFITLLSGCSDFPSESFFFAS 114
           + +  W   ++ Y R  +  E+      M    V P  +T + +LS CS    +      
Sbjct: 199 EDVFSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKD--LCK 258

Query: 115 SLHGYACKFGLDTGHVMVGTALIDIYSKCAQLGLARKVFYYLGVKNSVSWNTMLNGFMRN 174
            +H Y  +   +   + +  AL++ Y+ C ++ +A ++F  +  ++ +SW +++ G++  
Sbjct: 259 RVHEYVSECKTEPS-LRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVER 318

Query: 175 GEIELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVL 234
           G ++LA   FD+MP RD ISWT +I+G L+ G   ++LE F +MQ +G+  D  ++++VL
Sbjct: 319 GNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVL 378

Query: 235 AACADLGALTLGLWVHRFVMPLEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLV 294
            ACA LG+L +G W+  ++   + K+++ + N+LIDMY +CGC E A++VF  M +R   
Sbjct: 379 TACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKF 438

Query: 295 SWNSIIVGFAVNGFVDESLEFFYAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNM 354
           +W +++VG A NG   E+++ F+ MQ    +PD ++Y G L+AC+H+G+V++  + F  M
Sbjct: 439 TWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKM 498

Query: 355 KSVHKITPRIEHYGCIVDLYGRAGRLEDALNVIEEMPMKPNEVVLGSLLAACRTHGDVNL 414
           +S H+I P + HYGC+VD+ GRAG +++A  ++ +MPM PN +V G+LL A R H D  +
Sbjct: 499 RSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPM 558

Query: 415 AERLMKHLFKLDPEGDSYYVLLSNIYAAIGKWDGANNIRRTMKARGVQKKPGYSSVEIDG 474
           AE   K + +L+P+  + Y LL NIYA   +W     +RR +    ++K PG+S +E++G
Sbjct: 559 AELAAKKILELEPDNGAVYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNG 618

Query: 475 KVHEFVAGDNYHADADNIYSMLDLLYHELKVCGYVPGTDTIL 517
             HEFVAGD  H  ++ IY  L+ L  E     Y+P T  +L
Sbjct: 619 FAHEFVAGDKSHLQSEEIYMKLEELAQESTFAAYLPDTSELL 657

[Close]

BLAST of Chy12G212580 vs. ExPASy TrEMBL
Match: A0A0A0LYD6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G169950 PE=4 SV=1)

HSP 1 Score: 1040.4 bits (2689), Expect = 2.5e-300
Identity = 508/525 (96.76%), Postives = 515/525 (98.10%), Query Frame = 0


Query: 1   MSSIPSHTATPSQLQQPPFTPSSIPLSNPTKLNFPRSPNFPHRNISSKFTPNSVDPIVLW 60
           MSSIPSHTATPSQLQ PPFTPSSIPLSNPTKLNFPRSPN PHRNISSKF PNSVDPIVLW
Sbjct: 1   MSSIPSHTATPSQLQLPPFTPSSIPLSNPTKLNFPRSPNSPHRNISSKFNPNSVDPIVLW 60

Query: 61  TSSLARYCRNGQLPEAAAEFTRMRLAGVEPNHITFITLLSGCSDFPSESFFFASSLHGYA 120
           TSSLARYCRNGQL EAAAEFTRMRLAGVEPNHITFITLLS C+DFPSESFFFASSLHGYA
Sbjct: 61  TSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHITFITLLSACADFPSESFFFASSLHGYA 120

Query: 121 CKFGLDTGHVMVGTALIDIYSKCAQLGLARKVFYYLGVKNSVSWNTMLNGFMRNGEIELA 180
           CK+GLDTGHVMVGTALID+YSKCAQLG ARKVFY LGVKNSVSWNTMLNGFMRNGEIELA
Sbjct: 121 CKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTMLNGFMRNGEIELA 180

Query: 181 IQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACADL 240
           IQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACADL
Sbjct: 181 IQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACADL 240

Query: 241 GALTLGLWVHRFVMPLEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSII 300
           GALTLGLWVHRFVMP EFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSII
Sbjct: 241 GALTLGLWVHRFVMPQEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSII 300

Query: 301 VGFAVNGFVDESLEFFYAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKSVHKI 360
           VGFAVNGF DESLEFFYAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKSVHKI
Sbjct: 301 VGFAVNGFADESLEFFYAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKSVHKI 360

Query: 361 TPRIEHYGCIVDLYGRAGRLEDALNVIEEMPMKPNEVVLGSLLAACRTHGDVNLAERLMK 420
           TPRIEHYGCIVDLYGRAGRLEDALN+IEEMPMKPNEVVLGSLLAACRTHGDVNLAERLMK
Sbjct: 361 TPRIEHYGCIVDLYGRAGRLEDALNMIEEMPMKPNEVVLGSLLAACRTHGDVNLAERLMK 420

Query: 421 HLFKLDPEGDSYYVLLSNIYAAIGKWDGANNIRRTMKARGVQKKPGYSSVEIDGKVHEFV 480
           HLFKLDPEGD+YYVLLSNIYAAIGKWDGANN+RRTMKARGVQKKPGYSSVEIDGKVHEFV
Sbjct: 421 HLFKLDPEGDAYYVLLSNIYAAIGKWDGANNVRRTMKARGVQKKPGYSSVEIDGKVHEFV 480

Query: 481 AGDNYHADADNIYSMLDLLYHELKVCGYVPGTDTILNTKESNKDD 526
           AGDNYHADADNIYSMLDLL HELKVCGYVPG+DTILNTKESNKDD
Sbjct: 481 AGDNYHADADNIYSMLDLLCHELKVCGYVPGSDTILNTKESNKDD 525

[Close]

BLAST of Chy12G212580 vs. ExPASy TrEMBL
Match: A0A5A7UJB6 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G002000 PE=4 SV=1)

HSP 1 Score: 963.8 bits (2490), Expect = 3.0e-277
Identity = 477/524 (91.03%), Postives = 492/524 (93.89%), Query Frame = 0


Query: 1   MSSIPSHTATPSQLQQPPFTPSSIPLSNPTKLNFPRSPNFPHRNISSKFTPNSVDPIVLW 60
           MSSIPSH A+PSQLQQPP   SSIPLSNPTK+NFPRSP  PH NI SKFT NSV PIV W
Sbjct: 1   MSSIPSHIASPSQLQQPP--SSSIPLSNPTKVNFPRSPKSPHCNIFSKFTANSVHPIVQW 60

Query: 61  TSSLARYCRNGQLPEAAAEFTRMRLAGVEPNHITFITLLSGCSDFPSESFFFASSLHGYA 120
           TSS+ARYC NGQLPEAAAEFTRMRLAGVEPNHITFITLLSGC+DFPSES FFASSLHGYA
Sbjct: 61  TSSIARYCGNGQLPEAAAEFTRMRLAGVEPNHITFITLLSGCADFPSES-FFASSLHGYA 120

Query: 121 CKFGLDTGHVMVGTALIDIYSKCAQLGLARKVFYYLGVKNSVSWNTMLNGFMRNGEIELA 180
           CKFGLDTGHVMVGTALID+YSKC+QLGLA+KVF YLGVKNSVSWNTMLNGFMRNGEIELA
Sbjct: 121 CKFGLDTGHVMVGTALIDMYSKCSQLGLAKKVFDYLGVKNSVSWNTMLNGFMRNGEIELA 180

Query: 181 IQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACADL 240
           IQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGV ADYVSIIAVLAACADL
Sbjct: 181 IQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVVADYVSIIAVLAACADL 240

Query: 241 GALTLGLWVHRFVMPLEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSII 300
           GALT GLWV+RFVM  EFKDN++ISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSII
Sbjct: 241 GALTSGLWVNRFVMQQEFKDNVRISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSII 300

Query: 301 VGFAVNGFVDESLEFFYAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKSVHKI 360
           VGFA NGF DESLEFFYAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMK VHKI
Sbjct: 301 VGFAFNGFADESLEFFYAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKRVHKI 360

Query: 361 TPRIEHYGCIVDLYGRAGRLEDALNVIEEMPMKPNEVVLGSLLAACRTHGDVNLAERLMK 420
           TP IEHYGCIVDLYGRAGRLEDA NVIEEMPMKPNEVVLGSLLAACRTHGDV LAERLMK
Sbjct: 361 TPGIEHYGCIVDLYGRAGRLEDASNVIEEMPMKPNEVVLGSLLAACRTHGDVRLAERLMK 420

Query: 421 HLFKLDPEGDSYYVLLSNIYAAIGKWDGANNIRRTMKARGVQKKPGYSSVEIDGKVHEFV 480
           H+FKLD  GDS YVLLSNIYAAIGKW+GAN +RRTMKARGVQKK GYSSVEIDGKVHEFV
Sbjct: 421 HIFKLDSVGDSNYVLLSNIYAAIGKWEGANKVRRTMKARGVQKKRGYSSVEIDGKVHEFV 480

Query: 481 AGDNYHADADNIYSMLDLLYHELKVCGYVPGTDTILNTKESNKD 525
           AGD YHADADNIYSMLDLL+HELKVCGYVP TD ILNTK+SNKD
Sbjct: 481 AGDKYHADADNIYSMLDLLFHELKVCGYVPDTDIILNTKDSNKD 521

[Close]

BLAST of Chy12G212580 vs. ExPASy TrEMBL
Match: A0A1S3C956 (pentatricopeptide repeat-containing protein At1g05750, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103498199 PE=4 SV=1)

HSP 1 Score: 963.8 bits (2490), Expect = 3.0e-277
Identity = 477/524 (91.03%), Postives = 492/524 (93.89%), Query Frame = 0


Query: 1   MSSIPSHTATPSQLQQPPFTPSSIPLSNPTKLNFPRSPNFPHRNISSKFTPNSVDPIVLW 60
           MSSIPSH A+PSQLQQPP   SSIPLSNPTK+NFPRSP  PH NI SKFT NSV PIV W
Sbjct: 1   MSSIPSHIASPSQLQQPP--SSSIPLSNPTKVNFPRSPKSPHCNIFSKFTANSVHPIVQW 60

Query: 61  TSSLARYCRNGQLPEAAAEFTRMRLAGVEPNHITFITLLSGCSDFPSESFFFASSLHGYA 120
           TSS+ARYC NGQLPEAAAEFTRMRLAGVEPNHITFITLLSGC+DFPSES FFASSLHGYA
Sbjct: 61  TSSIARYCGNGQLPEAAAEFTRMRLAGVEPNHITFITLLSGCADFPSES-FFASSLHGYA 120

Query: 121 CKFGLDTGHVMVGTALIDIYSKCAQLGLARKVFYYLGVKNSVSWNTMLNGFMRNGEIELA 180
           CKFGLDTGHVMVGTALID+YSKC+QLGLA+KVF YLGVKNSVSWNTMLNGFMRNGEIELA
Sbjct: 121 CKFGLDTGHVMVGTALIDMYSKCSQLGLAKKVFDYLGVKNSVSWNTMLNGFMRNGEIELA 180

Query: 181 IQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACADL 240
           IQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGV ADYVSIIAVLAACADL
Sbjct: 181 IQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVVADYVSIIAVLAACADL 240

Query: 241 GALTLGLWVHRFVMPLEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSII 300
           GALT GLWV+RFVM  EFKDN++ISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSII
Sbjct: 241 GALTSGLWVNRFVMQQEFKDNVRISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSII 300

Query: 301 VGFAVNGFVDESLEFFYAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKSVHKI 360
           VGFA NGF DESLEFFYAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMK VHKI
Sbjct: 301 VGFAFNGFADESLEFFYAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKRVHKI 360

Query: 361 TPRIEHYGCIVDLYGRAGRLEDALNVIEEMPMKPNEVVLGSLLAACRTHGDVNLAERLMK 420
           TP IEHYGCIVDLYGRAGRLEDA NVIEEMPMKPNEVVLGSLLAACRTHGDV LAERLMK
Sbjct: 361 TPGIEHYGCIVDLYGRAGRLEDASNVIEEMPMKPNEVVLGSLLAACRTHGDVRLAERLMK 420

Query: 421 HLFKLDPEGDSYYVLLSNIYAAIGKWDGANNIRRTMKARGVQKKPGYSSVEIDGKVHEFV 480
           H+FKLD  GDS YVLLSNIYAAIGKW+GAN +RRTMKARGVQKK GYSSVEIDGKVHEFV
Sbjct: 421 HIFKLDSVGDSNYVLLSNIYAAIGKWEGANKVRRTMKARGVQKKRGYSSVEIDGKVHEFV 480

Query: 481 AGDNYHADADNIYSMLDLLYHELKVCGYVPGTDTILNTKESNKD 525
           AGD YHADADNIYSMLDLL+HELKVCGYVP TD ILNTK+SNKD
Sbjct: 481 AGDKYHADADNIYSMLDLLFHELKVCGYVPDTDIILNTKDSNKD 521

[Close]

BLAST of Chy12G212580 vs. ExPASy TrEMBL
Match: A0A6J1CN07 (pentatricopeptide repeat-containing protein At1g05750, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111012760 PE=4 SV=1)

HSP 1 Score: 887.5 bits (2292), Expect = 2.7e-254
Identity = 435/524 (83.02%), Postives = 472/524 (90.08%), Query Frame = 0


Query: 1   MSSIPSHTATPSQLQQPPFTPSSIPLSNPTKLNFPRSPNFPHRNISSKFTPNSVDPIVLW 60
           MSSIP++TA   QLQQ P   +SIPL NP  +NFPRS N  +R+ISSK T NS+DPIVLW
Sbjct: 1   MSSIPANTAAAVQLQQYPNPATSIPLPNPETINFPRSENSSNRHISSKSTGNSIDPIVLW 60

Query: 61  TSSLARYCRNGQLPEAAAEFTRMRLAGVEPNHITFITLLSGCSDFPSESFFFASSLHGYA 120
           TSS+ARYCRNGQL EAAAEFT MRLAGVEPNH+T ITLLSGC+DFPSES +F SSLHGYA
Sbjct: 61  TSSIARYCRNGQLAEAAAEFTSMRLAGVEPNHVTLITLLSGCADFPSESLYFGSSLHGYA 120

Query: 121 CKFGLDTGHVMVGTALIDIYSKCAQLGLARKVFYYLGVKNSVSWNTMLNGFMRNGEIELA 180
            K GLDT HVMVGT+++D+Y+KCAQLGLAR+VF YL +KNSVSWNTML+G+ RNGEIELA
Sbjct: 121 RKLGLDTAHVMVGTSIVDMYAKCAQLGLARRVFDYLRMKNSVSWNTMLDGYTRNGEIELA 180

Query: 181 IQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACADL 240
           I LFDEMPTRDAISWTALINGLLK GYSEQALECFHQMQ SG+  DYVSIIAVLAACADL
Sbjct: 181 IDLFDEMPTRDAISWTALINGLLKQGYSEQALECFHQMQCSGIKPDYVSIIAVLAACADL 240

Query: 241 GALTLGLWVHRFVMPLEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSII 300
           G LTLGLWV+RFVM  EFKDNI+ISNSLIDMYSRCGCI FARQVF +M+KRTLVSWNSII
Sbjct: 241 GTLTLGLWVNRFVMQQEFKDNIRISNSLIDMYSRCGCIGFARQVFERMSKRTLVSWNSII 300

Query: 301 VGFAVNGFVDESLEFFYAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKSVHKI 360
           VG+A NGF DESLEFF AMQKEGFKPD VSYTGALTACSHAGLVNKGLELFDNMK VH+I
Sbjct: 301 VGYAANGFADESLEFFDAMQKEGFKPDAVSYTGALTACSHAGLVNKGLELFDNMKRVHRI 360

Query: 361 TPRIEHYGCIVDLYGRAGRLEDALNVIEEMPMKPNEVVLGSLLAACRTHGDVNLAERLMK 420
            PRIEHYGCIVDLYGRAGRLEDAL+VIE+MPMKPNEVVLGSLLAACRTHGDV+LAERLMK
Sbjct: 361 IPRIEHYGCIVDLYGRAGRLEDALDVIEKMPMKPNEVVLGSLLAACRTHGDVSLAERLMK 420

Query: 421 HLFKLDPEGDSYYVLLSNIYAAIGKWDGANNIRRTMKARGVQKKPGYSSVEIDGKVHEFV 480
           HL KLDP GDS YVLLSNIYAAIGKW+GAN +RRTMKARGVQKKPG+SSVEIDGKVHEFV
Sbjct: 421 HLSKLDPGGDSNYVLLSNIYAAIGKWEGANKVRRTMKARGVQKKPGFSSVEIDGKVHEFV 480

Query: 481 AGDNYHADADNIYSMLDLLYHELKVCGYVPGTDTILNTKESNKD 525
           AGD YHADAD+IYSML LL HELK+CG VP T+T LNTKES+KD
Sbjct: 481 AGDKYHADADSIYSMLQLLVHELKICGSVPETETFLNTKESSKD 524

[Close]

BLAST of Chy12G212580 vs. ExPASy TrEMBL
Match: A0A6J1FZR8 (pentatricopeptide repeat-containing protein At1g05750, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111449396 PE=4 SV=1)

HSP 1 Score: 848.6 bits (2191), Expect = 1.4e-242
Identity = 414/524 (79.01%), Postives = 459/524 (87.60%), Query Frame = 0


Query: 1   MSSIPSHTATPSQLQQPPFTPSSIPLSNPTKLNFPRSPNFPHRNISSKFTPNSVDPIVLW 60
           MSS+P+HTA P Q Q   ++      SNP+ LNFPR PN          + N + PIVLW
Sbjct: 1   MSSVPAHTAIPFQFQLQQYSN-----SNPSNLNFPRYPN----------SSNPIKPIVLW 60

Query: 61  TSSLARYCRNGQLPEAAAEFTRMRLAGVEPNHITFITLLSGCSDFPSESFFFASSLHGYA 120
           TSS+ARYCRN QLPEAAAEFTRMRLAGVEPNHITFITLLSGC+DFPS S  F +SLHGY 
Sbjct: 61  TSSIARYCRNAQLPEAAAEFTRMRLAGVEPNHITFITLLSGCADFPSHSLHFGASLHGYV 120

Query: 121 CKFGLDTGHVMVGTALIDIYSKCAQLGLARKVFYYLGVKNSVSWNTMLNGFMRNGEIELA 180
            K GLDTGHVMVGTALI +Y+KCAQLGLAR VF YL +KNSV+WNTML+G+MRNGEIELA
Sbjct: 121 RKLGLDTGHVMVGTALIAMYAKCAQLGLARNVFDYLDMKNSVTWNTMLDGYMRNGEIELA 180

Query: 181 IQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACADL 240
           I+LFDEMPTRDAISWTALING LK GYSEQAL+CFH+MQ SG+  DYVSIIAVLAACADL
Sbjct: 181 IELFDEMPTRDAISWTALINGFLKQGYSEQALDCFHEMQCSGIEPDYVSIIAVLAACADL 240

Query: 241 GALTLGLWVHRFVMPLEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSII 300
           GAL+ GLWV+RF+M  EFKDNI+ISNSLIDMYSRCGCIEFARQVF KM KRTLVSWNS+I
Sbjct: 241 GALSFGLWVNRFLMQQEFKDNIRISNSLIDMYSRCGCIEFARQVFDKMPKRTLVSWNSMI 300

Query: 301 VGFAVNGFVDESLEFFYAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKSVHKI 360
           VGFA NGF DESLEFF AMQKEGFK DGVSYTGALTACSHAGLVNKGLELFDNMK VH+I
Sbjct: 301 VGFATNGFADESLEFFDAMQKEGFKADGVSYTGALTACSHAGLVNKGLELFDNMKRVHRI 360

Query: 361 TPRIEHYGCIVDLYGRAGRLEDALNVIEEMPMKPNEVVLGSLLAACRTHGDVNLAERLMK 420
           TPRIEHYGCIVDLY RAGRL++ALNVIE MPMKPNEVVLGSLLAACRTHGDV+LAERL+K
Sbjct: 361 TPRIEHYGCIVDLYSRAGRLDEALNVIETMPMKPNEVVLGSLLAACRTHGDVSLAERLIK 420

Query: 421 HLFKLDPEGDSYYVLLSNIYAAIGKWDGANNIRRTMKARGVQKKPGYSSVEIDGKVHEFV 480
           +LF+LDP GDS YVLLSNIYAA+G+W+GAN +RRTMKARGVQKKPG+SS+EIDGKVHEFV
Sbjct: 421 YLFELDPGGDSSYVLLSNIYAAVGRWEGANMVRRTMKARGVQKKPGFSSIEIDGKVHEFV 480

Query: 481 AGDNYHADADNIYSMLDLLYHELKVCGYVPGTDTILNTKESNKD 525
           AGD YHADADNIYSML++L+HELK+CGYVP T T +N  ES+K+
Sbjct: 481 AGDKYHADADNIYSMLEVLFHELKICGYVPETATFMNGNESSKE 509

[Close]

BLAST of Chy12G212580 vs. NCBI nr
Match: XP_004139593.1 (pentatricopeptide repeat-containing protein At1g05750, chloroplastic [Cucumis sativus])

HSP 1 Score: 1035 bits (2675), Expect = 0.0
Identity = 508/525 (96.76%), Postives = 515/525 (98.10%), Query Frame = 0


Query: 1   MSSIPSHTATPSQLQQPPFTPSSIPLSNPTKLNFPRSPNFPHRNISSKFTPNSVDPIVLW 60
           MSSIPSHTATPSQLQ PPFTPSSIPLSNPTKLNFPRSPN PHRNISSKF PNSVDPIVLW
Sbjct: 1   MSSIPSHTATPSQLQLPPFTPSSIPLSNPTKLNFPRSPNSPHRNISSKFNPNSVDPIVLW 60

Query: 61  TSSLARYCRNGQLPEAAAEFTRMRLAGVEPNHITFITLLSGCSDFPSESFFFASSLHGYA 120
           TSSLARYCRNGQL EAAAEFTRMRLAGVEPNHITFITLLS C+DFPSESFFFASSLHGYA
Sbjct: 61  TSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHITFITLLSACADFPSESFFFASSLHGYA 120

Query: 121 CKFGLDTGHVMVGTALIDIYSKCAQLGLARKVFYYLGVKNSVSWNTMLNGFMRNGEIELA 180
           CK+GLDTGHVMVGTALID+YSKCAQLG ARKVFY LGVKNSVSWNTMLNGFMRNGEIELA
Sbjct: 121 CKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTMLNGFMRNGEIELA 180

Query: 181 IQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACADL 240
           IQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACADL
Sbjct: 181 IQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACADL 240

Query: 241 GALTLGLWVHRFVMPLEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSII 300
           GALTLGLWVHRFVMP EFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSII
Sbjct: 241 GALTLGLWVHRFVMPQEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSII 300

Query: 301 VGFAVNGFVDESLEFFYAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKSVHKI 360
           VGFAVNGF DESLEFFYAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKSVHKI
Sbjct: 301 VGFAVNGFADESLEFFYAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKSVHKI 360

Query: 361 TPRIEHYGCIVDLYGRAGRLEDALNVIEEMPMKPNEVVLGSLLAACRTHGDVNLAERLMK 420
           TPRIEHYGCIVDLYGRAGRLEDALN+IEEMPMKPNEVVLGSLLAACRTHGDVNLAERLMK
Sbjct: 361 TPRIEHYGCIVDLYGRAGRLEDALNMIEEMPMKPNEVVLGSLLAACRTHGDVNLAERLMK 420

Query: 421 HLFKLDPEGDSYYVLLSNIYAAIGKWDGANNIRRTMKARGVQKKPGYSSVEIDGKVHEFV 480
           HLFKLDPEGD+YYVLLSNIYAAIGKWDGANN+RRTMKARGVQKKPGYSSVEIDGKVHEFV
Sbjct: 421 HLFKLDPEGDAYYVLLSNIYAAIGKWDGANNVRRTMKARGVQKKPGYSSVEIDGKVHEFV 480

Query: 481 AGDNYHADADNIYSMLDLLYHELKVCGYVPGTDTILNTKESNKDD 525
           AGDNYHADADNIYSMLDLL HELKVCGYVPG+DTILNTKESNKDD
Sbjct: 481 AGDNYHADADNIYSMLDLLCHELKVCGYVPGSDTILNTKESNKDD 525

[Close]

BLAST of Chy12G212580 vs. NCBI nr
Match: XP_008458940.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g05750, chloroplastic [Cucumis melo] >KAA0054376.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK12413.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 958 bits (2477), Expect = 0.0
Identity = 477/524 (91.03%), Postives = 492/524 (93.89%), Query Frame = 0


Query: 1   MSSIPSHTATPSQLQQPPFTPSSIPLSNPTKLNFPRSPNFPHRNISSKFTPNSVDPIVLW 60
           MSSIPSH A+PSQLQQPP   SSIPLSNPTK+NFPRSP  PH NI SKFT NSV PIV W
Sbjct: 1   MSSIPSHIASPSQLQQPPS--SSIPLSNPTKVNFPRSPKSPHCNIFSKFTANSVHPIVQW 60

Query: 61  TSSLARYCRNGQLPEAAAEFTRMRLAGVEPNHITFITLLSGCSDFPSESFFFASSLHGYA 120
           TSS+ARYC NGQLPEAAAEFTRMRLAGVEPNHITFITLLSGC+DFPSESFF ASSLHGYA
Sbjct: 61  TSSIARYCGNGQLPEAAAEFTRMRLAGVEPNHITFITLLSGCADFPSESFF-ASSLHGYA 120

Query: 121 CKFGLDTGHVMVGTALIDIYSKCAQLGLARKVFYYLGVKNSVSWNTMLNGFMRNGEIELA 180
           CKFGLDTGHVMVGTALID+YSKC+QLGLA+KVF YLGVKNSVSWNTMLNGFMRNGEIELA
Sbjct: 121 CKFGLDTGHVMVGTALIDMYSKCSQLGLAKKVFDYLGVKNSVSWNTMLNGFMRNGEIELA 180

Query: 181 IQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACADL 240
           IQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGV ADYVSIIAVLAACADL
Sbjct: 181 IQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVVADYVSIIAVLAACADL 240

Query: 241 GALTLGLWVHRFVMPLEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSII 300
           GALT GLWV+RFVM  EFKDN++ISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSII
Sbjct: 241 GALTSGLWVNRFVMQQEFKDNVRISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSII 300

Query: 301 VGFAVNGFVDESLEFFYAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKSVHKI 360
           VGFA NGF DESLEFFYAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMK VHKI
Sbjct: 301 VGFAFNGFADESLEFFYAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKRVHKI 360

Query: 361 TPRIEHYGCIVDLYGRAGRLEDALNVIEEMPMKPNEVVLGSLLAACRTHGDVNLAERLMK 420
           TP IEHYGCIVDLYGRAGRLEDA NVIEEMPMKPNEVVLGSLLAACRTHGDV LAERLMK
Sbjct: 361 TPGIEHYGCIVDLYGRAGRLEDASNVIEEMPMKPNEVVLGSLLAACRTHGDVRLAERLMK 420

Query: 421 HLFKLDPEGDSYYVLLSNIYAAIGKWDGANNIRRTMKARGVQKKPGYSSVEIDGKVHEFV 480
           H+FKLD  GDS YVLLSNIYAAIGKW+GAN +RRTMKARGVQKK GYSSVEIDGKVHEFV
Sbjct: 421 HIFKLDSVGDSNYVLLSNIYAAIGKWEGANKVRRTMKARGVQKKRGYSSVEIDGKVHEFV 480

Query: 481 AGDNYHADADNIYSMLDLLYHELKVCGYVPGTDTILNTKESNKD 524
           AGD YHADADNIYSMLDLL+HELKVCGYVP TD ILNTK+SNKD
Sbjct: 481 AGDKYHADADNIYSMLDLLFHELKVCGYVPDTDIILNTKDSNKD 521

[Close]

BLAST of Chy12G212580 vs. NCBI nr
Match: XP_038877228.1 (pentatricopeptide repeat-containing protein At1g05750, chloroplastic [Benincasa hispida])

HSP 1 Score: 920 bits (2378), Expect = 0.0
Identity = 454/524 (86.64%), Postives = 482/524 (91.98%), Query Frame = 0


Query: 1   MSSIPSHTATPSQLQQPPFTPSSIPLSNPTKLNFPRSPNFPHRNISSKFTPNSVDPIVLW 60
           MSS PS+TA PSQLQQ P  PSSIPLSNPTKLNFPRSPN  HRNISSKF  NS+DPIVLW
Sbjct: 1   MSSSPSYTAIPSQLQQYPNPPSSIPLSNPTKLNFPRSPNSSHRNISSKFPANSIDPIVLW 60

Query: 61  TSSLARYCRNGQLPEAAAEFTRMRLAGVEPNHITFITLLSGCSDFPSESFFFASSLHGYA 120
           TSSLARYCRNGQL EAA EFTRMRLAGVEPNH+TFITLLSGC+DFPSES FF SSLHGYA
Sbjct: 61  TSSLARYCRNGQLSEAATEFTRMRLAGVEPNHVTFITLLSGCTDFPSESLFFGSSLHGYA 120

Query: 121 CKFGLDTGHVMVGTALIDIYSKCAQLGLARKVFYYLGVKNSVSWNTMLNGFMRNGEIELA 180
            K GLDTGHVMVGTAL+D+Y+KCAQ  LARKVF YLG+KNSV+WNTML+G+ RNGEIELA
Sbjct: 121 RKLGLDTGHVMVGTALVDMYAKCAQSRLARKVFDYLGMKNSVTWNTMLDGYTRNGEIELA 180

Query: 181 IQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACADL 240
           I LFDEMPTRDAISWTALINGLLK G+SEQALECFHQMQ SG+  DYVSIIAVLAACADL
Sbjct: 181 IDLFDEMPTRDAISWTALINGLLKQGFSEQALECFHQMQCSGIEPDYVSIIAVLAACADL 240

Query: 241 GALTLGLWVHRFVMPLEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSII 300
           GALTLGLWV+RFVM  EFKDNI+ISNSL+DMYSRCGCIEFARQVF KM KRTLVSWNSII
Sbjct: 241 GALTLGLWVNRFVMQQEFKDNIRISNSLVDMYSRCGCIEFARQVFEKMPKRTLVSWNSII 300

Query: 301 VGFAVNGFVDESLEFFYAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKSVHKI 360
           VGFAVNGF DESLEFF AMQ EGFKPDGVSYTGALTACSHAGLVNKGLELFDNMK +HKI
Sbjct: 301 VGFAVNGFADESLEFFDAMQNEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKRIHKI 360

Query: 361 TPRIEHYGCIVDLYGRAGRLEDALNVIEEMPMKPNEVVLGSLLAACRTHGDVNLAERLMK 420
           TPRIEHYGCIVDLYGRAGRLEDALNVIEEMPMKPNEVVLGSLLAACRT+GDV+LAE+LMK
Sbjct: 361 TPRIEHYGCIVDLYGRAGRLEDALNVIEEMPMKPNEVVLGSLLAACRTYGDVSLAEKLMK 420

Query: 421 HLFKLDPEGDSYYVLLSNIYAAIGKWDGANNIRRTMKARGVQKKPGYSSVEIDGKVHEFV 480
           HL KLDP GDS YVLLSNIYAAIG+W+GAN +RRTMKARGVQKKPG SSVEIDGKVHEFV
Sbjct: 421 HLSKLDPRGDSNYVLLSNIYAAIGRWEGANKVRRTMKARGVQKKPGCSSVEIDGKVHEFV 480

Query: 481 AGDNYHADADNIYSMLDLLYHELKVCGYVPGTDTILNTKESNKD 524
           AGD YHADADNIYSML+LL+HELK+ GYVP T+ ILNTKE +KD
Sbjct: 481 AGDKYHADADNIYSMLELLFHELKIYGYVPDTNIILNTKEFSKD 524

[Close]

BLAST of Chy12G212580 vs. NCBI nr
Match: XP_022142716.1 (pentatricopeptide repeat-containing protein At1g05750, chloroplastic [Momordica charantia])

HSP 1 Score: 882 bits (2278), Expect = 0.0
Identity = 435/524 (83.02%), Postives = 472/524 (90.08%), Query Frame = 0


Query: 1   MSSIPSHTATPSQLQQPPFTPSSIPLSNPTKLNFPRSPNFPHRNISSKFTPNSVDPIVLW 60
           MSSIP++TA   QLQQ P   +SIPL NP  +NFPRS N  +R+ISSK T NS+DPIVLW
Sbjct: 1   MSSIPANTAAAVQLQQYPNPATSIPLPNPETINFPRSENSSNRHISSKSTGNSIDPIVLW 60

Query: 61  TSSLARYCRNGQLPEAAAEFTRMRLAGVEPNHITFITLLSGCSDFPSESFFFASSLHGYA 120
           TSS+ARYCRNGQL EAAAEFT MRLAGVEPNH+T ITLLSGC+DFPSES +F SSLHGYA
Sbjct: 61  TSSIARYCRNGQLAEAAAEFTSMRLAGVEPNHVTLITLLSGCADFPSESLYFGSSLHGYA 120

Query: 121 CKFGLDTGHVMVGTALIDIYSKCAQLGLARKVFYYLGVKNSVSWNTMLNGFMRNGEIELA 180
            K GLDT HVMVGT+++D+Y+KCAQLGLAR+VF YL +KNSVSWNTML+G+ RNGEIELA
Sbjct: 121 RKLGLDTAHVMVGTSIVDMYAKCAQLGLARRVFDYLRMKNSVSWNTMLDGYTRNGEIELA 180

Query: 181 IQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACADL 240
           I LFDEMPTRDAISWTALINGLLK GYSEQALECFHQMQ SG+  DYVSIIAVLAACADL
Sbjct: 181 IDLFDEMPTRDAISWTALINGLLKQGYSEQALECFHQMQCSGIKPDYVSIIAVLAACADL 240

Query: 241 GALTLGLWVHRFVMPLEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSII 300
           G LTLGLWV+RFVM  EFKDNI+ISNSLIDMYSRCGCI FARQVF +M+KRTLVSWNSII
Sbjct: 241 GTLTLGLWVNRFVMQQEFKDNIRISNSLIDMYSRCGCIGFARQVFERMSKRTLVSWNSII 300

Query: 301 VGFAVNGFVDESLEFFYAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKSVHKI 360
           VG+A NGF DESLEFF AMQKEGFKPD VSYTGALTACSHAGLVNKGLELFDNMK VH+I
Sbjct: 301 VGYAANGFADESLEFFDAMQKEGFKPDAVSYTGALTACSHAGLVNKGLELFDNMKRVHRI 360

Query: 361 TPRIEHYGCIVDLYGRAGRLEDALNVIEEMPMKPNEVVLGSLLAACRTHGDVNLAERLMK 420
            PRIEHYGCIVDLYGRAGRLEDAL+VIE+MPMKPNEVVLGSLLAACRTHGDV+LAERLMK
Sbjct: 361 IPRIEHYGCIVDLYGRAGRLEDALDVIEKMPMKPNEVVLGSLLAACRTHGDVSLAERLMK 420

Query: 421 HLFKLDPEGDSYYVLLSNIYAAIGKWDGANNIRRTMKARGVQKKPGYSSVEIDGKVHEFV 480
           HL KLDP GDS YVLLSNIYAAIGKW+GAN +RRTMKARGVQKKPG+SSVEIDGKVHEFV
Sbjct: 421 HLSKLDPGGDSNYVLLSNIYAAIGKWEGANKVRRTMKARGVQKKPGFSSVEIDGKVHEFV 480

Query: 481 AGDNYHADADNIYSMLDLLYHELKVCGYVPGTDTILNTKESNKD 524
           AGD YHADAD+IYSML LL HELK+CG VP T+T LNTKES+KD
Sbjct: 481 AGDKYHADADSIYSMLQLLVHELKICGSVPETETFLNTKESSKD 524

[Close]

BLAST of Chy12G212580 vs. NCBI nr
Match: XP_023521260.1 (pentatricopeptide repeat-containing protein At1g05750, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 847 bits (2188), Expect = 1.02e-306
Identity = 415/524 (79.20%), Postives = 461/524 (87.98%), Query Frame = 0


Query: 1   MSSIPSHTATPSQLQQPPFTPSSIPLSNPTKLNFPRSPNFPHRNISSKFTPNSVDPIVLW 60
           MSS+P+HTA P Q Q   ++      SNP+ LNFPR PN          + N + PIVLW
Sbjct: 1   MSSVPAHTAVPFQFQLQQYS-----NSNPSNLNFPRYPN----------SSNPIKPIVLW 60

Query: 61  TSSLARYCRNGQLPEAAAEFTRMRLAGVEPNHITFITLLSGCSDFPSESFFFASSLHGYA 120
           TSS+ARYCRN QLPEAAAEFTRMRLAGVEPNHITFITLLSGC+DFPS S  F +SLHGY 
Sbjct: 61  TSSIARYCRNDQLPEAAAEFTRMRLAGVEPNHITFITLLSGCADFPSHSLHFGASLHGYV 120

Query: 121 CKFGLDTGHVMVGTALIDIYSKCAQLGLARKVFYYLGVKNSVSWNTMLNGFMRNGEIELA 180
            K GLDTGHVMVGTALI +Y+KCAQLGLAR VF YL +KNSV+WNTML+G+MRNGEIELA
Sbjct: 121 RKLGLDTGHVMVGTALIAMYAKCAQLGLARNVFDYLDMKNSVTWNTMLDGYMRNGEIELA 180

Query: 181 IQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACADL 240
           I+LFDEMPTRDAISWTALING LK GYSEQALECFH+MQ SG+  DYVSIIAVLAACADL
Sbjct: 181 IELFDEMPTRDAISWTALINGFLKQGYSEQALECFHEMQCSGIEPDYVSIIAVLAACADL 240

Query: 241 GALTLGLWVHRFVMPLEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSII 300
           GAL+ GLWV+RF+M  EFKDNI+ISNSLIDMYSRCGCIEFARQVF KM KRTLVSWNS+I
Sbjct: 241 GALSFGLWVNRFLMQQEFKDNIRISNSLIDMYSRCGCIEFARQVFDKMPKRTLVSWNSMI 300

Query: 301 VGFAVNGFVDESLEFFYAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKSVHKI 360
           VGFA+NGF DESLEFF AMQKEGFK DGVSYTGALTACSHAGLVNKGLELFDNMK VH+I
Sbjct: 301 VGFAINGFADESLEFFDAMQKEGFKADGVSYTGALTACSHAGLVNKGLELFDNMKRVHRI 360

Query: 361 TPRIEHYGCIVDLYGRAGRLEDALNVIEEMPMKPNEVVLGSLLAACRTHGDVNLAERLMK 420
           TPRIEHYGCIVDLY RAGRL++ALNVIE MPMKPNEVVLGSLLAACRTHGDV+LAERL+K
Sbjct: 361 TPRIEHYGCIVDLYSRAGRLDEALNVIETMPMKPNEVVLGSLLAACRTHGDVSLAERLIK 420

Query: 421 HLFKLDPEGDSYYVLLSNIYAAIGKWDGANNIRRTMKARGVQKKPGYSSVEIDGKVHEFV 480
           +LF+LDP GDS YVLLSNIYAA+G+W+GAN +RRTMKARGVQKKPG+SS+EIDGKVHEFV
Sbjct: 421 YLFELDPGGDSSYVLLSNIYAAVGRWEGANKVRRTMKARGVQKKPGFSSIEIDGKVHEFV 480

Query: 481 AGDNYHADADNIYSMLDLLYHELKVCGYVPGTDTILNTKESNKD 524
           AGD YHADADNIYSML++L+HELK+CGYVP T T++N  ES+K+
Sbjct: 481 AGDKYHADADNIYSMLEVLFHELKICGYVPETATLMNGNESSKE 509

[Close]

BLAST of Chy12G212580 vs. TAIR 10
Match: AT1G05750.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 578.9 bits (1491), Expect = 4.0e-165
Identity = 277/456 (60.75%), Postives = 350/456 (76.75%), Query Frame = 0


Query: 58  VLWTSSLARYCRNGQLPEAAAEFTRMRLAGVEPNHITFITLLSGCSDFPSESFFFASSLH 117
           V WTS +    RNG+L EAA EF+ M LAGVEPNHITFI LLSGC DF S S      LH
Sbjct: 37  VSWTSRINLLTRNGRLAEAAKEFSDMTLAGVEPNHITFIALLSGCGDFTSGSEALGDLLH 96

Query: 118 GYACKFGLDTGHVMVGTALIDIYSKCAQLGLARKVFYYLGVKNSVSWNTMLNGFMRNGEI 177
           GYACK GLD  HVMVGTA+I +YSK  +   AR VF Y+  KNSV+WNTM++G+MR+G++
Sbjct: 97  GYACKLGLDRNHVMVGTAIIGMYSKRGRFKKARLVFDYMEDKNSVTWNTMIDGYMRSGQV 156

Query: 178 ELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAAC 237
           + A ++FD+MP RD ISWTA+ING +K GY E+AL  F +MQ SGV  DYV+IIA L AC
Sbjct: 157 DNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFREMQISGVKPDYVAIIAALNAC 216

Query: 238 ADLGALTLGLWVHRFVMPLEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWN 297
            +LGAL+ GLWVHR+V+  +FK+N+++SNSLID+Y RCGC+EFARQVF  M KRT+VSWN
Sbjct: 217 TNLGALSFGLWVHRYVLSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFYNMEKRTVVSWN 276

Query: 298 SIIVGFAVNGFVDESLEFFYAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKSV 357
           S+IVGFA NG   ESL +F  MQ++GFKPD V++TGALTACSH GLV +GL  F  MK  
Sbjct: 277 SVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGALTACSHVGLVEEGLRYFQIMKCD 336

Query: 358 HKITPRIEHYGCIVDLYGRAGRLEDALNVIEEMPMKPNEVVLGSLLAACRTHG-DVNLAE 417
           ++I+PRIEHYGC+VDLY RAGRLEDAL +++ MPMKPNEVV+GSLLAAC  HG ++ LAE
Sbjct: 337 YRISPRIEHYGCLVDLYSRAGRLEDALKLVQSMPMKPNEVVIGSLLAACSNHGNNIVLAE 396

Query: 418 RLMKHLFKLDPEGDSYYVLLSNIYAAIGKWDGANNIRRTMKARGVQKKPGYSSVEIDGKV 477
           RLMKHL  L+ +  S YV+LSN+YAA GKW+GA+ +RR MK  G++K+PG+SS+EID  +
Sbjct: 397 RLMKHLTDLNVKSHSNYVILSNMYAADGKWEGASKMRRKMKGLGLKKQPGFSSIEIDDCM 456

Query: 478 HEFVAGDNYHADADNIYSMLDLLYHELKVCGYVPGT 513
           H F+AGDN H +   I  +L+L+  +L++ G V  T
Sbjct: 457 HVFMAGDNAHVETTYIREVLELISSDLRLQGCVVET 492

[Close]

BLAST of Chy12G212580 vs. TAIR 10
Match: AT3G22690.1 (CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881), Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29760.1); Has 49784 Blast hits to 14716 proteins in 280 species: Archae - 2; Bacteria - 10; Metazoa - 107; Fungi - 167; Plants - 48594; Viruses - 0; Other Eukaryotes - 904 (source: NCBI BLink). )

HSP 1 Score: 369.4 bits (947), Expect = 4.8e-102
Identity = 178/459 (38.78%), Postives = 283/459 (61.66%), Query Frame = 0


Query: 59  LWTSSLARYCRNGQLPEAAAEFTRMRLAGVEPNHITFITLLSGCSDFPSESFFFASSLHG 118
           L  +  + Y R G   EA   F  M  +GV P+ I+ ++ +S CS     +  +  S HG
Sbjct: 304 LCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQL--RNILWGKSCHG 363

Query: 119 YACKFGLDTGHVMVGTALIDIYSKCAQLGLARKVFYYLGVKNSVSWNTMLNGFMRNGEIE 178
           Y  + G ++    +  ALID+Y KC +   A ++F  +  K  V+WN+++ G++ NGE++
Sbjct: 364 YVLRNGFESWD-NICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVD 423

Query: 179 LAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQ-RSGVAADYVSIIAVLAAC 238
            A + F+ MP ++ +SW  +I+GL++    E+A+E F  MQ + GV AD V+++++ +AC
Sbjct: 424 AAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASAC 483

Query: 239 ADLGALTLGLWVHRFVMPLEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWN 298
             LGAL L  W++ ++     + ++++  +L+DM+SRCG  E A  +F  +  R + +W 
Sbjct: 484 GHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWT 543

Query: 299 SIIVGFAVNGFVDESLEFFYAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKSV 358
           + I   A+ G  + ++E F  M ++G KPDGV++ GALTACSH GLV +G E+F +M  +
Sbjct: 544 AAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKL 603

Query: 359 HKITPRIEHYGCIVDLYGRAGRLEDALNVIEEMPMKPNEVVLGSLLAACRTHGDVNLAER 418
           H ++P   HYGC+VDL GRAG LE+A+ +IE+MPM+PN+V+  SLLAACR  G+V +A  
Sbjct: 604 HGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAY 663

Query: 419 LMKHLFKLDPEGDSYYVLLSNIYAAIGKWDGANNIRRTMKARGVQKKPGYSSVEIDGKVH 478
             + +  L PE    YVLLSN+YA+ G+W+    +R +MK +G++K PG SS++I GK H
Sbjct: 664 AAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTH 723

Query: 479 EFVAGDNYHADADNIYSMLDLLYHELKVCGYVPGTDTIL 517
           EF +GD  H +  NI +MLD +       G+VP    +L
Sbjct: 724 EFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPDLSNVL 759

[Close]

BLAST of Chy12G212580 vs. TAIR 10
Match: AT3G22690.2 (INVOLVED IN: photosystem II assembly, regulation of chlorophyll biosynthetic process, photosystem I assembly, thylakoid membrane organization, RNA modification; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29760.1). )

HSP 1 Score: 369.4 bits (947), Expect = 4.8e-102
Identity = 178/459 (38.78%), Postives = 283/459 (61.66%), Query Frame = 0


Query: 59  LWTSSLARYCRNGQLPEAAAEFTRMRLAGVEPNHITFITLLSGCSDFPSESFFFASSLHG 118
           L  +  + Y R G   EA   F  M  +GV P+ I+ ++ +S CS     +  +  S HG
Sbjct: 304 LCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQL--RNILWGKSCHG 363

Query: 119 YACKFGLDTGHVMVGTALIDIYSKCAQLGLARKVFYYLGVKNSVSWNTMLNGFMRNGEIE 178
           Y  + G ++    +  ALID+Y KC +   A ++F  +  K  V+WN+++ G++ NGE++
Sbjct: 364 YVLRNGFESWD-NICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVD 423

Query: 179 LAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQ-RSGVAADYVSIIAVLAAC 238
            A + F+ MP ++ +SW  +I+GL++    E+A+E F  MQ + GV AD V+++++ +AC
Sbjct: 424 AAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASAC 483

Query: 239 ADLGALTLGLWVHRFVMPLEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWN 298
             LGAL L  W++ ++     + ++++  +L+DM+SRCG  E A  +F  +  R + +W 
Sbjct: 484 GHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWT 543

Query: 299 SIIVGFAVNGFVDESLEFFYAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKSV 358
           + I   A+ G  + ++E F  M ++G KPDGV++ GALTACSH GLV +G E+F +M  +
Sbjct: 544 AAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKL 603

Query: 359 HKITPRIEHYGCIVDLYGRAGRLEDALNVIEEMPMKPNEVVLGSLLAACRTHGDVNLAER 418
           H ++P   HYGC+VDL GRAG LE+A+ +IE+MPM+PN+V+  SLLAACR  G+V +A  
Sbjct: 604 HGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAY 663

Query: 419 LMKHLFKLDPEGDSYYVLLSNIYAAIGKWDGANNIRRTMKARGVQKKPGYSSVEIDGKVH 478
             + +  L PE    YVLLSN+YA+ G+W+    +R +MK +G++K PG SS++I GK H
Sbjct: 664 AAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTH 723

Query: 479 EFVAGDNYHADADNIYSMLDLLYHELKVCGYVPGTDTIL 517
           EF +GD  H +  NI +MLD +       G+VP    +L
Sbjct: 724 EFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPDLSNVL 759

[Close]

BLAST of Chy12G212580 vs. TAIR 10
Match: AT2G29760.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 360.5 bits (924), Expect = 2.2e-99
Identity = 170/476 (35.71%), Postives = 292/476 (61.34%), Query Frame = 0


Query: 49  FTPNSVDPIVLWTSSLARYCRNGQLPEAAAEFTRMRLAGVEPNHITFITLLSGCSDFPSE 108
           FT      +V W S +  + + G   +A   F +M    V+ +H+T + +LS C+     
Sbjct: 189 FTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKI--R 248

Query: 109 SFFFASSLHGYACKFGLDTGHVMVGTALIDIYSKCAQLGLARKVFYYLGVKNSVSWNTML 168
           +  F   +  Y  +  ++  ++ +  A++D+Y+KC  +  A+++F  +  K++V+W TML
Sbjct: 249 NLEFGRQVCSYIEENRVNV-NLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTML 308

Query: 169 NGFMRNGEIELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQ-RSGVAADY 228
           +G+  + + E A ++ + MP +D ++W ALI+   ++G   +AL  FH++Q +  +  + 
Sbjct: 309 DGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQ 368

Query: 229 VSIIAVLAACADLGALTLGLWVHRFVMPLEFKDNIKISNSLIDMYSRCGCIEFARQVFVK 288
           +++++ L+ACA +GAL LG W+H ++     + N  ++++LI MYS+CG +E +R+VF  
Sbjct: 369 ITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNS 428

Query: 289 MAKRTLVSWNSIIVGFAVNGFVDESLEFFYAMQKEGFKPDGVSYTGALTACSHAGLVNKG 348
           + KR +  W+++I G A++G  +E+++ FY MQ+   KP+GV++T    ACSH GLV++ 
Sbjct: 429 VEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEA 488

Query: 349 LELFDNMKSVHKITPRIEHYGCIVDLYGRAGRLEDALNVIEEMPMKPNEVVLGSLLAACR 408
             LF  M+S + I P  +HY CIVD+ GR+G LE A+  IE MP+ P+  V G+LL AC+
Sbjct: 489 ESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACK 548

Query: 409 THGDVNLAERLMKHLFKLDPEGDSYYVLLSNIYAAIGKWDGANNIRRTMKARGVQKKPGY 468
            H ++NLAE     L +L+P  D  +VLLSNIYA +GKW+  + +R+ M+  G++K+PG 
Sbjct: 549 IHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGC 608

Query: 469 SSVEIDGKVHEFVAGDNYHADADNIYSMLDLLYHELKVCGYVPGTDTILNTKESNK 524
           SS+EIDG +HEF++GDN H  ++ +Y  L  +  +LK  GY P    +L   E  +
Sbjct: 609 SSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEE 661

[Close]

BLAST of Chy12G212580 vs. TAIR 10
Match: AT4G37380.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 359.0 bits (920), Expect = 6.5e-99
Identity = 177/476 (37.18%), Postives = 285/476 (59.87%), Query Frame = 0


Query: 53  SVDP-IVLWTSSLARYCRNGQLPEAAAEFTRMRLAGVEPNHITFITLLSGCSDFPSESFF 112
           ++DP + L+T+++     NG   +A   + ++  + + PN  TF +LL  CS    +   
Sbjct: 90  TIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLLKSCSTKSGK--- 149

Query: 113 FASSLHGYACKFGLDTGHVMVGTALIDIYSKCAQLGLARKVFYYLGVKNSVSWNTMLNGF 172
               +H +  KFGL      V T L+D+Y+K   +  A+KVF  +  ++ VS   M+  +
Sbjct: 150 ---LIHTHVLKFGLGI-DPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCY 209

Query: 173 MRNGEIELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSG-VAADYVSI 232
            + G +E A  LFD M  RD +SW  +I+G  +HG+   AL  F ++   G    D +++
Sbjct: 210 AKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITV 269

Query: 233 IAVLAACADLGALTLGLWVHRFVMPLEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAK 292
           +A L+AC+ +GAL  G W+H FV     + N+K+   LIDMYS+CG +E A  VF    +
Sbjct: 270 VAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPR 329

Query: 293 RTLVSWNSIIVGFAVNGFVDESLEFFYAMQK-EGFKPDGVSYTGALTACSHAGLVNKGLE 352
           + +V+WN++I G+A++G+  ++L  F  MQ   G +P  +++ G L AC+HAGLVN+G+ 
Sbjct: 330 KDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIR 389

Query: 353 LFDNMKSVHKITPRIEHYGCIVDLYGRAGRLEDALNVIEEMPMKPNEVVLGSLLAACRTH 412
           +F++M   + I P+IEHYGC+V L GRAG+L+ A   I+ M M  + V+  S+L +C+ H
Sbjct: 390 IFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLH 449

Query: 413 GDVNLAERLMKHLFKLDPEGDSYYVLLSNIYAAIGKWDGANNIRRTMKARGVQKKPGYSS 472
           GD  L + + ++L  L+ +    YVLLSNIYA++G ++G   +R  MK +G+ K+PG S+
Sbjct: 450 GDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGIST 509

Query: 473 VEIDGKVHEFVAGDNYHADADNIYSMLDLLYHELKVCGYVPGTDTILNTKESNKDD 526
           +EI+ KVHEF AGD  H+ +  IY+ML  +   +K  GYVP T+T+L   E  + +
Sbjct: 510 IEIENKVHEFRAGDREHSKSKEIYTMLRKISERIKSHGYVPNTNTVLQDLEETEKE 558

The following BLAST results are available for this feature:

BLAST of Chy12G212580 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9MA50	5.6e-164	60.75	Pentatricopeptide repeat-containing protein At1g05750, chloroplastic OS=Arabidop...	[more]
Q9LUJ2	6.8e-101	38.78	Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana OX...	[more]
O82380	3.2e-98	35.71	Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidop...	[more]
Q9SZT8	9.2e-98	37.18	Pentatricopeptide repeat-containing protein ELI1, chloroplastic OS=Arabidopsis t...	[more]
Q9LSB8	1.0e-96	34.85	Putative pentatricopeptide repeat-containing protein At3g15930 OS=Arabidopsis th...	[more]

BLAST of Chy12G212580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LYD6	2.5e-300	96.76	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G169950 PE=4 SV=1	[more]
A0A5A7UJB6	3.0e-277	91.03	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3C956	3.0e-277	91.03	pentatricopeptide repeat-containing protein At1g05750, chloroplastic OS=Cucumis ...	[more]
A0A6J1CN07	2.7e-254	83.02	pentatricopeptide repeat-containing protein At1g05750, chloroplastic OS=Momordic...	[more]
A0A6J1FZR8	1.4e-242	79.01	pentatricopeptide repeat-containing protein At1g05750, chloroplastic OS=Cucurbit...	[more]

BLAST of Chy12G212580 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004139593.1	0.0	96.76	pentatricopeptide repeat-containing protein At1g05750, chloroplastic [Cucumis sa...	[more]
XP_008458940.1	0.0	91.03	PREDICTED: pentatricopeptide repeat-containing protein At1g05750, chloroplastic ...	[more]
XP_038877228.1	0.0	86.64	pentatricopeptide repeat-containing protein At1g05750, chloroplastic [Benincasa ...	[more]
XP_022142716.1	0.0	83.02	pentatricopeptide repeat-containing protein At1g05750, chloroplastic [Momordica ...	[more]
XP_023521260.1	1.02e-306	79.20	pentatricopeptide repeat-containing protein At1g05750, chloroplastic [Cucurbita ...	[more]

BLAST of Chy12G212580 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G05750.1	4.0e-165	60.75	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G22690.1	4.8e-102	38.78	CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012...	[more]
AT3G22690.2	4.8e-102	38.78	INVOLVED IN: photosystem II assembly, regulation of chlorophyll biosynthetic pro...	[more]
AT2G29760.1	2.2e-99	35.71	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G37380.1	6.5e-99	37.18	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 42..109 e-value: 3.4E-8 score: 35.0 coord: 125..246 e-value: 8.8E-28 score: 98.9
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 265..478 e-value: 4.3E-43 score: 149.8
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	48452	TPR-like	coord: 171..450
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 329..356 e-value: 0.0065 score: 16.6 coord: 294..324 e-value: 4.0E-6 score: 26.7 coord: 366..391 e-value: 0.0013 score: 18.8 coord: 266..291 e-value: 0.0013 score: 18.9
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 294..327 e-value: 2.0E-6 score: 25.6 coord: 367..390 e-value: 7.3E-4 score: 17.6 coord: 193..225 e-value: 1.1E-7 score: 29.6 coord: 162..190 e-value: 9.0E-8 score: 29.8 coord: 329..356 e-value: 0.0029 score: 15.6
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 191..238 e-value: 9.6E-9 score: 35.3 coord: 159..190 e-value: 6.1E-9 score: 35.9 coord: 57..102 e-value: 4.1E-7 score: 30.1
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 56..90 score: 9.415814
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 160..190 score: 11.070971
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 292..326 score: 11.388848
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 191..225 score: 11.564229
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
None	No IPR available	PANTHER	PTHR47926	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	coord: 38..511
None	No IPR available	PANTHER	PTHR47926:SF65	BNAANNG25350D PROTEIN	coord: 38..511

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy12G212580.1	Chy12G212580.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009451	RNA modification
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003723	RNA binding