Chy12G212330 (gene) Cucumber (hystrix) v1

Overview
NameChy12G212330
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionHepatoma-derived growth factor-related protein 2-like
LocationchrH12: 9049666 .. 9049956 (+)
RNA-Seq ExpressionChy12G212330
SyntenyChy12G212330
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATAATCAAAATTGGAACAATGGAAGTTTCAGATCGAAATCGAAATGTAGGTACGTTTCATCTCCTTCGAATTCTTCATTTTCCTCTGGTGAAACCAATGAAATATATGTACCGAAGAGAGATGGCAAAATCCGCTCCAAAACTAAGTCAAAATCGAGATATTCGGCTTCTCCGAATCACCTCCCTGAAAAACTAGTTGCTTTGGTGTTCACCGAAGAAAACTTCAGAGAAGAAGAACAGCGAAAACAAAATTCTGGAGAACAACCTTGGGTGGGGCAAGAACAATGA

mRNA sequence

ATGGATAATCAAAATTGGAACAATGGAAGTTTCAGATCGAAATCGAAATGTAGGTACGTTTCATCTCCTTCGAATTCTTCATTTTCCTCTGGTGAAACCAATGAAATATATGTACCGAAGAGAGATGGCAAAATCCGCTCCAAAACTAAGTCAAAATCGAGATATTCGGCTTCTCCGAATCACCTCCCTGAAAAACTAGTTGCTTTGGTGTTCACCGAAGAAAACTTCAGAGAAGAAGAACAGCGAAAACAAAATTCTGGAGAACAACCTTGGGTGGGGCAAGAACAATGA

Coding sequence (CDS)

ATGGATAATCAAAATTGGAACAATGGAAGTTTCAGATCGAAATCGAAATGTAGGTACGTTTCATCTCCTTCGAATTCTTCATTTTCCTCTGGTGAAACCAATGAAATATATGTACCGAAGAGAGATGGCAAAATCCGCTCCAAAACTAAGTCAAAATCGAGATATTCGGCTTCTCCGAATCACCTCCCTGAAAAACTAGTTGCTTTGGTGTTCACCGAAGAAAACTTCAGAGAAGAAGAACAGCGAAAACAAAATTCTGGAGAACAACCTTGGGTGGGGCAAGAACAATGA

Protein sequence

MDNQNWNNGSFRSKSKCRYVSSPSNSSFSSGETNEIYVPKRDGKIRSKTKSKSRYSASPNHLPEKLVALVFTEENFREEEQRKQNSGEQPWVGQEQ*
Homology
BLAST of Chy12G212330 vs. ExPASy TrEMBL
Match: A0A0A0KYJ1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G055420 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.9e-16
Identity = 54/89 (60.67%), Postives = 65/89 (73.03%), Query Frame = 0

Query: 1   MDNQNWNNGSFRSKSKCRYVSSPSNSSFSSGETNEIYVPKRDGKIRSKTKSKSRYSASPN 60
           MDNQ+ NNGS RSKSKCRYVSSPSNSSFSSGE +EI VPKRDGK+RSK+KS+S YSASP 
Sbjct: 127 MDNQDRNNGSSRSKSKCRYVSSPSNSSFSSGEIDEISVPKRDGKVRSKSKSESGYSASPP 186

Query: 61  HLPEKLVALVFTEENFREEEQRKQNSGEQ 90
             P +     +      ++   K+NSG +
Sbjct: 187 QSPPRKTGCFWCSP---KKTSEKKNSGNK 212

BLAST of Chy12G212330 vs. ExPASy TrEMBL
Match: A0A5A7TUQ2 (Hepatoma-derived growth factor-related protein 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002750 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 5.4e-15
Identity = 52/85 (61.18%), Postives = 59/85 (69.41%), Query Frame = 0

Query: 1   MDNQNWNNGSFRSKSKCRYVSSPSNSSFSSGETNEIYVPKRDGKIRSKTKSKSRYSASPN 60
           MDNQN  NGS RSKSKCRYVSSPSNSSFSSGE +EI V K+DGKIRSKTKS+S YSASP 
Sbjct: 127 MDNQNRKNGSSRSKSKCRYVSSPSNSSFSSGEIDEISVRKKDGKIRSKTKSESGYSASPP 186

Query: 61  HLPEKLVALVFTEENFREEEQRKQN 86
             P +     +       E++   N
Sbjct: 187 QSPPRKTGCFWCSPKKTSEKKSSGN 211

BLAST of Chy12G212330 vs. ExPASy TrEMBL
Match: A0A5D3CYZ5 (Hepatoma-derived growth factor-related protein 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003060 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 7.1e-15
Identity = 52/85 (61.18%), Postives = 59/85 (69.41%), Query Frame = 0

Query: 1   MDNQNWNNGSFRSKSKCRYVSSPSNSSFSSGETNEIYVPKRDGKIRSKTKSKSRYSASPN 60
           MDNQN  NGS RSKSKCRYVSSPSNSSFSSGE +EI V K+DGKIRSKTKS+S YSASP 
Sbjct: 127 MDNQNPKNGSSRSKSKCRYVSSPSNSSFSSGEIDEISVRKKDGKIRSKTKSESGYSASPP 186

Query: 61  HLPEKLVALVFTEENFREEEQRKQN 86
             P +     +       E++   N
Sbjct: 187 QSPPRKTGCFWCSPKKTSEKKSSGN 211

BLAST of Chy12G212330 vs. ExPASy TrEMBL
Match: A0A1S3BTQ7 (uncharacterized protein LOC103493061 OS=Cucumis melo OX=3656 GN=LOC103493061 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 7.1e-15
Identity = 52/85 (61.18%), Postives = 59/85 (69.41%), Query Frame = 0

Query: 1   MDNQNWNNGSFRSKSKCRYVSSPSNSSFSSGETNEIYVPKRDGKIRSKTKSKSRYSASPN 60
           MDNQN  NGS RSKSKCRYVSSPSNSSFSSGE +EI V K+DGKIRSKTKS+S YSASP 
Sbjct: 127 MDNQNPKNGSSRSKSKCRYVSSPSNSSFSSGEIDEISVRKKDGKIRSKTKSESGYSASPP 186

Query: 61  HLPEKLVALVFTEENFREEEQRKQN 86
             P +     +       E++   N
Sbjct: 187 QSPPRKTGCFWCSPKKTSEKKSSGN 211

BLAST of Chy12G212330 vs. ExPASy TrEMBL
Match: A0A6J1JDL6 (uncharacterized protein LOC111483447 OS=Cucurbita maxima OX=3661 GN=LOC111483447 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.9e-08
Identity = 42/85 (49.41%), Postives = 50/85 (58.82%), Query Frame = 0

Query: 1   MDNQNWNNGSFRSKSKCRYVSSPSNSSFSSGETNEIYVPKRDGKIRSKTKSKSRYSASPN 60
           MDNQ   NGS R+KSKCRYVSSPS SS SSGE +E   PK+  KIRSKT S+S   ASP 
Sbjct: 127 MDNQKPKNGSSRAKSKCRYVSSPSYSSSSSGEIDEFLEPKKGTKIRSKTSSESGSFASPP 186

Query: 61  HLPEKLVALVFTEENFREEEQRKQN 86
             P +     +       E++   N
Sbjct: 187 QSPPRRAGCFWCSPKKASEKKNSNN 211

BLAST of Chy12G212330 vs. NCBI nr
Match: XP_004149003.1 (uncharacterized protein LOC101211778 [Cucumis sativus] >KGN53447.1 hypothetical protein Csa_014881 [Cucumis sativus])

HSP 1 Score: 96.3 bits (238), Expect = 1.50e-21
Identity = 55/87 (63.22%), Postives = 63/87 (72.41%), Query Frame = 0

Query: 1   MDNQNWNNGSFRSKSKCRYVSSPSNSSFSSGETNEIYVPKRDGKIRSKTKSKSRYSASPN 60
           MDNQ+ NNGS RSKSKCRYVSSPSNSSFSSGE +EI VPKRDGK+RSK+KS+S YSASP 
Sbjct: 127 MDNQDRNNGSSRSKSKCRYVSSPSNSSFSSGEIDEISVPKRDGKVRSKSKSESGYSASPP 186

Query: 61  HLPEKLVALVFTEENFREEEQRKQNSG 87
             P +     +       E   K+NSG
Sbjct: 187 QSPPRKTGCFWCSPKKTSE---KKNSG 210

BLAST of Chy12G212330 vs. NCBI nr
Match: KAA0044969.1 (hepatoma-derived growth factor-related protein 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 92.0 bits (227), Expect = 5.83e-20
Identity = 50/63 (79.37%), Postives = 53/63 (84.13%), Query Frame = 0

Query: 1   MDNQNWNNGSFRSKSKCRYVSSPSNSSFSSGETNEIYVPKRDGKIRSKTKSKSRYSASPN 60
           MDNQN  NGS RSKSKCRYVSSPSNSSFSSGE +EI V K+DGKIRSKTKS+S YSASP 
Sbjct: 127 MDNQNRKNGSSRSKSKCRYVSSPSNSSFSSGEIDEISVRKKDGKIRSKTKSESGYSASPP 186

Query: 61  HLP 63
             P
Sbjct: 187 QSP 189

BLAST of Chy12G212330 vs. NCBI nr
Match: TYK16498.1 (hepatoma-derived growth factor-related protein 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 91.7 bits (226), Expect = 8.16e-20
Identity = 50/63 (79.37%), Postives = 53/63 (84.13%), Query Frame = 0

Query: 1   MDNQNWNNGSFRSKSKCRYVSSPSNSSFSSGETNEIYVPKRDGKIRSKTKSKSRYSASPN 60
           MDNQN  NGS RSKSKCRYVSSPSNSSFSSGE +EI V K+DGKIRSKTKS+S YSASP 
Sbjct: 127 MDNQNPKNGSSRSKSKCRYVSSPSNSSFSSGEIDEISVRKKDGKIRSKTKSESGYSASPP 186

Query: 61  HLP 63
             P
Sbjct: 187 QSP 189

BLAST of Chy12G212330 vs. NCBI nr
Match: XP_008451909.1 (PREDICTED: uncharacterized protein LOC103493061 [Cucumis melo])

HSP 1 Score: 91.7 bits (226), Expect = 1.03e-19
Identity = 50/63 (79.37%), Postives = 53/63 (84.13%), Query Frame = 0

Query: 1   MDNQNWNNGSFRSKSKCRYVSSPSNSSFSSGETNEIYVPKRDGKIRSKTKSKSRYSASPN 60
           MDNQN  NGS RSKSKCRYVSSPSNSSFSSGE +EI V K+DGKIRSKTKS+S YSASP 
Sbjct: 127 MDNQNPKNGSSRSKSKCRYVSSPSNSSFSSGEIDEISVRKKDGKIRSKTKSESGYSASPP 186

Query: 61  HLP 63
             P
Sbjct: 187 QSP 189

BLAST of Chy12G212330 vs. NCBI nr
Match: XP_022931390.1 (uncharacterized protein LOC111437587 [Cucurbita moschata])

HSP 1 Score: 68.9 bits (167), Expect = 2.54e-11
Identity = 42/85 (49.41%), Postives = 50/85 (58.82%), Query Frame = 0

Query: 1   MDNQNWNNGSFRSKSKCRYVSSPSNSSFSSGETNEIYVPKRDGKIRSKTKSKSRYSASPN 60
           MDNQ   NGS R+KSKCRYVSSPS SS SSGE +E   PK+  KIRSKT S+S   ASP 
Sbjct: 127 MDNQKPKNGSSRAKSKCRYVSSPSYSSTSSGEIDEFLEPKKGTKIRSKTSSESGSFASPP 186

Query: 61  HLPEKLVALVFTEENFREEEQRKQN 85
             P +     +       E++   N
Sbjct: 187 QSPPRRAGCFWCSPKKASEKKNSSN 211

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KYJ12.9e-1660.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G055420 PE=4 SV=1[more]
A0A5A7TUQ25.4e-1561.18Hepatoma-derived growth factor-related protein 2-like OS=Cucumis melo var. makuw... [more]
A0A5D3CYZ57.1e-1561.18Hepatoma-derived growth factor-related protein 2-like OS=Cucumis melo var. makuw... [more]
A0A1S3BTQ77.1e-1561.18uncharacterized protein LOC103493061 OS=Cucumis melo OX=3656 GN=LOC103493061 PE=... [more]
A0A6J1JDL62.9e-0849.41uncharacterized protein LOC111483447 OS=Cucurbita maxima OX=3661 GN=LOC111483447... [more]
Match NameE-valueIdentityDescription
XP_004149003.11.50e-2163.22uncharacterized protein LOC101211778 [Cucumis sativus] >KGN53447.1 hypothetical ... [more]
KAA0044969.15.83e-2079.37hepatoma-derived growth factor-related protein 2-like [Cucumis melo var. makuwa][more]
TYK16498.18.16e-2079.37hepatoma-derived growth factor-related protein 2-like [Cucumis melo var. makuwa][more]
XP_008451909.11.03e-1979.37PREDICTED: uncharacterized protein LOC103493061 [Cucumis melo][more]
XP_022931390.12.54e-1149.41uncharacterized protein LOC111437587 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..60
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 76..96
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..34

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy12G212330.1Chy12G212330.1mRNA