Chy12G212210 (gene) Cucumber (hystrix) v1

Overview
NameChy12G212210
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionU-box domain-containing protein 35-like
LocationchrH12: 8914507 .. 8915897 (-)
RNA-Seq ExpressionChy12G212210
SyntenyChy12G212210
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGACTTTGGAAGGAGATGTTTACTTGGGCACTGATGATTTCCAATTAGATCCAAGTTTAAGCGCGAATGAAGATGAGGAATCGAGCGAGCTGTTCGAGATTGAGCTAGGGATTGAGGTGCGATCCAATTGTAAACAGGAGGATGATTGCGGGGAAAGTTGGTTCTCCTTTGATTTCTGCAAATCAAACCATTGCGTTTACATTGGGATTAGCGATAACTTCGATTCGAGTTTGGACGCCTTGCAATGGACTCTCCATTTCGCTGTTTTACCCTCCACTATCGTTTCTCTTTCATGTCTTCCCCGAGATTCGCTTCATTCCCAGCCCATGTATGTCCTCTCTCTCTCTGTAACATAATTCTTTCAGAATTGAAATAGCTTGATGCAAATAAAAAACAAAATGGTTTTATGCAATGTAAATAATCTGCAGAGAGATGTTCTATTTTGTTATCAACTGCAGAGAAGAACCAGTTTCAGGTAACTAAAATGTTTGCTTTCACGTTTTGTTATCAAGTGGGAATGCTTCCGAGGAGCCAGGTTAGTCTAAGCTAGTGGAGAAGTTCAGGACTGAAGAGAGAAAAAAAGAGGGAGTTTCTTCAAAAGTTTGTTGATAAATGTTTGGCTGTTCAGGTATATATCATCAGCAGATTACATTCTATGCATTTCAGTTAGATTTTATGACCAAGTTCTTTACAGTACAATTTCACTAACATTTTACAGGTCAGTGGGGAGGTTGTGATGATTGAGAGTGATATGTTGTCCAAGGCAATCCTTGATCTTCTCGCTCTTTTCCAAATAGAAACACTCATACTAGGGAGCTCCAAACCCAGGTCTATCTCTCTCTCTCTCTCTCTCTAGACAAACTTACTGATCTTCAGTTCAAAACTCAAATGTGCAAATGTCTTATATCTCTGGGCTGAATTTCTGAATTTTGGAACCTAGAAAAAATGGAGATCTAAGAGAGGAAAAGTGATAGCCAGACGTGTACTGCAAAATGCAGAAGAATTCTGTGATGTGAAAATCATATGTGAAGCAAAGGGATCCACCAACACCTACCAAGCGATTGAGTCGCCATCGTCATCTTTGTCGTCACACACCACCTCCCTCTCCAAATTTAAATGACAAGAATATCCATTTCAAGAGAGTGGAGAATGAATATCCACGCAGTAGTTTCTTAAGTTGGAGGTGTTTTGGTTTTTAAACCCCATCTTCATGTCACTAATCTACTGATGACCTTACGTTAATAGACACCCTTGGATTCACTTCCCAGGGAACTATTCTCAAGCTTTAGATGACAAAAAGTACATACAAGAACTTATGCAAAGTGAAATTGAAATTGTTGACAGGCAAAAACAAGTACAATTCATCAACCCATCTATCAATAACTGA

mRNA sequence

ATGTTGACTTTGGAAGGAGATGTTTACTTGGGCACTGATGATTTCCAATTAGATCCAAGTTTAAGCGCGAATGAAGATGAGGAATCGAGCGAGCTGTTCGAGATTGAGCTAGGGATTGAGGTGCGATCCAATTGTAAACAGGAGGATGATTGCGGGGAAAGTTGGTTCTCCTTTGATTTCTGCAAATCAAACCATTGCGTTTACATTGGGATTAGCGATAACTTCGATTCGAGTTTGGACGCCTTGCAATGGACTCTCCATTTCGCTGTTTTACCCTCCACTATCGTTTCTCTTTCATGTCTTCCCCGAGATTCGCTTCATTCCCAGCCCATGTATATATCATCAGCAGATTACATTCTATGCATTTCAGTTAGATTTTATGACCAAGTTCTTTACAGTACAATTTCACTAACATTTTACAGACACCCTTGGATTCACTTCCCAGGGAACTATTCTCAAGCTTTAGATGACAAAAAGTACATACAAGAACTTATGCAAAGTGAAATTGAAATTGTTGACAGGCAAAAACAAGTACAATTCATCAACCCATCTATCAATAACTGA

Coding sequence (CDS)

ATGTTGACTTTGGAAGGAGATGTTTACTTGGGCACTGATGATTTCCAATTAGATCCAAGTTTAAGCGCGAATGAAGATGAGGAATCGAGCGAGCTGTTCGAGATTGAGCTAGGGATTGAGGTGCGATCCAATTGTAAACAGGAGGATGATTGCGGGGAAAGTTGGTTCTCCTTTGATTTCTGCAAATCAAACCATTGCGTTTACATTGGGATTAGCGATAACTTCGATTCGAGTTTGGACGCCTTGCAATGGACTCTCCATTTCGCTGTTTTACCCTCCACTATCGTTTCTCTTTCATGTCTTCCCCGAGATTCGCTTCATTCCCAGCCCATGTATATATCATCAGCAGATTACATTCTATGCATTTCAGTTAGATTTTATGACCAAGTTCTTTACAGTACAATTTCACTAACATTTTACAGACACCCTTGGATTCACTTCCCAGGGAACTATTCTCAAGCTTTAGATGACAAAAAGTACATACAAGAACTTATGCAAAGTGAAATTGAAATTGTTGACAGGCAAAAACAAGTACAATTCATCAACCCATCTATCAATAACTGA

Protein sequence

MLTLEGDVYLGTDDFQLDPSLSANEDEESSELFEIELGIEVRSNCKQEDDCGESWFSFDFCKSNHCVYIGISDNFDSSLDALQWTLHFAVLPSTIVSLSCLPRDSLHSQPMYISSADYILCISVRFYDQVLYSTISLTFYRHPWIHFPGNYSQALDDKKYIQELMQSEIEIVDRQKQVQFINPSINN*
Homology
[Close]
BLAST of Chy12G212210 vs. ExPASy TrEMBL
Match: A0A0A0LVQ5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G175720 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 1.8e-43
Identity = 91/98 (92.86%), Postives = 92/98 (93.88%), Query Frame = 0 

Query: 1  MLTLEGDVYLGTDDFQLDPSLSANEDEESSELFEIELGIEVRSNCKQEDDCGESWFSFDF 60
          MLTLEGDVY GTDDF LDPSLSANEDEESSELFEIELGIEVRSNCK EDDCGESWFSFDF
Sbjct: 1  MLTLEGDVYFGTDDFLLDPSLSANEDEESSELFEIELGIEVRSNCKLEDDCGESWFSFDF 60

Query: 61 CKSNHCVYIGISDNFDSSLDALQWTLHFAVLPSTIVSL 99
           KSNHCVY+GISDNFDSSLDALQWTLHFAVL STIV L
Sbjct: 61 RKSNHCVYVGISDNFDSSLDALQWTLHFAVLSSTIVYL 98

[Close]
BLAST of Chy12G212210 vs. ExPASy TrEMBL
Match: A0A5D3CU66 (U-box domain-containing protein 35-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00730 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 1.4e-38
Identity = 84/98 (85.71%), Postives = 87/98 (88.78%), Query Frame = 0 

Query: 1  MLTLEGDVYLGTDDFQLDPSLSANEDEESSELFEIELGIEVRSNCKQEDDCGESWFSFDF 60
          ML  EG VY GTDDF LDPSLSANEDEESSELFEIELGIE RSN KQED+C ESWFSFDF
Sbjct: 1  MLASEGGVYFGTDDFLLDPSLSANEDEESSELFEIELGIEARSNRKQEDECAESWFSFDF 60

Query: 61 CKSNHCVYIGISDNFDSSLDALQWTLHFAVLPSTIVSL 99
           KSNH VY+GISDNFDSS+DALQWTLHFAVLPSTIV L
Sbjct: 61 RKSNHFVYVGISDNFDSSMDALQWTLHFAVLPSTIVYL 98

[Close]
BLAST of Chy12G212210 vs. ExPASy TrEMBL
Match: A0A1S3CLA7 (U-box domain-containing protein 35-like OS=Cucumis melo OX=3656 GN=LOC103502223 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 1.4e-38
Identity = 84/98 (85.71%), Postives = 87/98 (88.78%), Query Frame = 0 

Query: 1  MLTLEGDVYLGTDDFQLDPSLSANEDEESSELFEIELGIEVRSNCKQEDDCGESWFSFDF 60
          ML  EG VY GTDDF LDPSLSANEDEESSELFEIELGIE RSN KQED+C ESWFSFDF
Sbjct: 1  MLASEGGVYFGTDDFLLDPSLSANEDEESSELFEIELGIEARSNRKQEDECAESWFSFDF 60

Query: 61 CKSNHCVYIGISDNFDSSLDALQWTLHFAVLPSTIVSL 99
           KSNH VY+GISDNFDSS+DALQWTLHFAVLPSTIV L
Sbjct: 61 RKSNHFVYVGISDNFDSSMDALQWTLHFAVLPSTIVYL 98

[Close]
BLAST of Chy12G212210 vs. ExPASy TrEMBL
Match: A0A6J1CM72 (U-box domain-containing protein 35-like isoform X3 OS=Momordica charantia OX=3673 GN=LOC111012574 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 3.7e-28
Identity = 68/94 (72.34%), Postives = 77/94 (81.91%), Query Frame = 0 

Query: 9   YLGTDDFQLDPSLSANEDEESSELFEIELGIEVRSNCKQEDDC----GESWFSFDFCKSN 68
           Y G+++FQ D SLS NE+  SSELFEIELGIEVRSN KQEDDC      SWFSFDF KSN
Sbjct: 18  YFGSENFQFDRSLSENEEGGSSELFEIELGIEVRSNRKQEDDCECEFEGSWFSFDFRKSN 77

Query: 69  HCVYIGISDNFDSSLDALQWTLHFAVLPSTIVSL 99
           HCVY+GI DN DSS+DAL+WTL+FAVLPST+V L
Sbjct: 78  HCVYVGIGDNIDSSMDALKWTLNFAVLPSTVVYL 111

[Close]
BLAST of Chy12G212210 vs. ExPASy TrEMBL
Match: A0A6J1CMT0 (U-box domain-containing protein 35-like isoform X4 OS=Momordica charantia OX=3673 GN=LOC111012574 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 3.7e-28
Identity = 68/94 (72.34%), Postives = 77/94 (81.91%), Query Frame = 0 

Query: 9   YLGTDDFQLDPSLSANEDEESSELFEIELGIEVRSNCKQEDDC----GESWFSFDFCKSN 68
           Y G+++FQ D SLS NE+  SSELFEIELGIEVRSN KQEDDC      SWFSFDF KSN
Sbjct: 18  YFGSENFQFDRSLSENEEGGSSELFEIELGIEVRSNRKQEDDCECEFEGSWFSFDFRKSN 77

Query: 69  HCVYIGISDNFDSSLDALQWTLHFAVLPSTIVSL 99
           HCVY+GI DN DSS+DAL+WTL+FAVLPST+V L
Sbjct: 78  HCVYVGIGDNIDSSMDALKWTLNFAVLPSTVVYL 111

[Close]
BLAST of Chy12G212210 vs. NCBI nr
Match: KAE8652834.1 (hypothetical protein Csa_022704, partial [Cucumis sativus])

HSP 1 Score: 186 bits (471), Expect = 4.84e-57
Identity = 91/98 (92.86%), Postives = 92/98 (93.88%), Query Frame = 0 

Query: 1  MLTLEGDVYLGTDDFQLDPSLSANEDEESSELFEIELGIEVRSNCKQEDDCGESWFSFDF 60
          MLTLEGDVY GTDDF LDPSLSANEDEESSELFEIELGIEVRSNCK EDDCGESWFSFDF
Sbjct: 1  MLTLEGDVYFGTDDFLLDPSLSANEDEESSELFEIELGIEVRSNCKLEDDCGESWFSFDF 60

Query: 61 CKSNHCVYIGISDNFDSSLDALQWTLHFAVLPSTIVSL 98
           KSNHCVY+GISDNFDSSLDALQWTLHFAVL STIV L
Sbjct: 61 RKSNHCVYVGISDNFDSSLDALQWTLHFAVLSSTIVYL 98

[Close]
BLAST of Chy12G212210 vs. NCBI nr
Match: XP_011654798.1 (uncharacterized protein LOC101215271 [Cucumis sativus])

HSP 1 Score: 186 bits (471), Expect = 1.45e-56
Identity = 91/98 (92.86%), Postives = 92/98 (93.88%), Query Frame = 0 

Query: 1  MLTLEGDVYLGTDDFQLDPSLSANEDEESSELFEIELGIEVRSNCKQEDDCGESWFSFDF 60
          MLTLEGDVY GTDDF LDPSLSANEDEESSELFEIELGIEVRSNCK EDDCGESWFSFDF
Sbjct: 1  MLTLEGDVYFGTDDFLLDPSLSANEDEESSELFEIELGIEVRSNCKLEDDCGESWFSFDF 60

Query: 61 CKSNHCVYIGISDNFDSSLDALQWTLHFAVLPSTIVSL 98
           KSNHCVY+GISDNFDSSLDALQWTLHFAVL STIV L
Sbjct: 61 RKSNHCVYVGISDNFDSSLDALQWTLHFAVLSSTIVYL 98

[Close]
BLAST of Chy12G212210 vs. NCBI nr
Match: KAA0042368.1 (U-box domain-containing protein 35-like [Cucumis melo var. makuwa] >TYK15487.1 U-box domain-containing protein 35-like [Cucumis melo var. makuwa])

HSP 1 Score: 169 bits (429), Expect = 1.69e-49
Identity = 84/98 (85.71%), Postives = 87/98 (88.78%), Query Frame = 0 

Query: 1  MLTLEGDVYLGTDDFQLDPSLSANEDEESSELFEIELGIEVRSNCKQEDDCGESWFSFDF 60
          ML  EG VY GTDDF LDPSLSANEDEESSELFEIELGIE RSN KQED+C ESWFSFDF
Sbjct: 1  MLASEGGVYFGTDDFLLDPSLSANEDEESSELFEIELGIEARSNRKQEDECAESWFSFDF 60

Query: 61 CKSNHCVYIGISDNFDSSLDALQWTLHFAVLPSTIVSL 98
           KSNH VY+GISDNFDSS+DALQWTLHFAVLPSTIV L
Sbjct: 61 RKSNHFVYVGISDNFDSSMDALQWTLHFAVLPSTIVYL 98

[Close]
BLAST of Chy12G212210 vs. NCBI nr
Match: XP_008464309.1 (PREDICTED: U-box domain-containing protein 35-like [Cucumis melo])

HSP 1 Score: 169 bits (429), Expect = 9.10e-49
Identity = 84/98 (85.71%), Postives = 87/98 (88.78%), Query Frame = 0 

Query: 1  MLTLEGDVYLGTDDFQLDPSLSANEDEESSELFEIELGIEVRSNCKQEDDCGESWFSFDF 60
          ML  EG VY GTDDF LDPSLSANEDEESSELFEIELGIE RSN KQED+C ESWFSFDF
Sbjct: 1  MLASEGGVYFGTDDFLLDPSLSANEDEESSELFEIELGIEARSNRKQEDECAESWFSFDF 60

Query: 61 CKSNHCVYIGISDNFDSSLDALQWTLHFAVLPSTIVSL 98
           KSNH VY+GISDNFDSS+DALQWTLHFAVLPSTIV L
Sbjct: 61 RKSNHFVYVGISDNFDSSMDALQWTLHFAVLPSTIVYL 98

[Close]
BLAST of Chy12G212210 vs. NCBI nr
Match: XP_038894104.1 (U-box domain-containing protein 35-like [Benincasa hispida])

HSP 1 Score: 154 bits (388), Expect = 1.22e-42
Identity = 81/98 (82.65%), Postives = 83/98 (84.69%), Query Frame = 0 

Query: 1  MLTLEGDVYLGTDDFQLDPSLSANEDEESSELFEIELGIEVRSNCKQEDDCGESWFSFDF 60
          ML LEG      DDF LD SL ANEDEESSELFEIELGIEVRSN KQEDDC ESWFSFDF
Sbjct: 1  MLPLEGG-----DDFLLDRSLIANEDEESSELFEIELGIEVRSNRKQEDDCEESWFSFDF 60

Query: 61 CKSNHCVYIGISDNFDSSLDALQWTLHFAVLPSTIVSL 98
           KSNHCVY+GISDNFDSS+DALQWTL FAVLPSTIV L
Sbjct: 61 RKSNHCVYVGISDNFDSSMDALQWTLDFAVLPSTIVYL 93

The following BLAST results are available for this feature:
BLAST of Chy12G212210 vs.
Match NameE-valueIdentityDescription
BLAST of Chy12G212210 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LVQ51.8e-4392.86Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G175720 PE=4 SV=1[more]
A0A5D3CU661.4e-3885.71U-box domain-containing protein 35-like OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A1S3CLA71.4e-3885.71U-box domain-containing protein 35-like OS=Cucumis melo OX=3656 GN=LOC103502223 ... [more]
A0A6J1CM723.7e-2872.34U-box domain-containing protein 35-like isoform X3 OS=Momordica charantia OX=367... [more]
A0A6J1CMT03.7e-2872.34U-box domain-containing protein 35-like isoform X4 OS=Momordica charantia OX=367... [more]
BLAST of Chy12G212210 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8652834.14.84e-5792.86hypothetical protein Csa_022704, partial [Cucumis sativus][more]
XP_011654798.11.45e-5692.86uncharacterized protein LOC101215271 [Cucumis sativus][more]
KAA0042368.11.69e-4985.71U-box domain-containing protein 35-like [Cucumis melo var. makuwa] >TYK15487.1 U... [more]
XP_008464309.19.10e-4985.71PREDICTED: U-box domain-containing protein 35-like [Cucumis melo][more]
XP_038894104.11.22e-4282.65U-box domain-containing protein 35-like [Benincasa hispida][more]
BLAST of Chy12G212210 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy12G212210.1Chy12G212210.1mRNA