Chy12G210020 (gene) Cucumber (hystrix) v1

Overview
NameChy12G210020
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH12: 4709816 .. 4710329 (-)
RNA-Seq ExpressionChy12G210020
SyntenyChy12G210020
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGGTTTGAACTTTTGACTCATGGTGCACTGAATGCCTTTTCACATATGGTATGGTAATGTTACTGAGTTATATAACTTATAAGTTTGTTGATGGGATTTCTAGATCTACCTTGATCGAATTTGAGATGCAGTTTTATTTGAATTTGGCACTTGAAAATTTTGTAATTTCTGGTTCAATATTTTTGTATAGGAAGGGGCTTTCTCAACCCTATATTCTCCGTATAACAGTCTGGAACTCCATGGAATTGAAAGCTATATCCAACTGCAGATTGGGTACGAGGCTTTTGCAGCTGGTCATTTTTGCGCCTTCATGATATTTAAACGGATCACATTATTGGTATAAGGTTTGTCTTTCTTTCTTAAATTATTTCAGGAAGTGATATCTTATTTTTTTCACCGTCCTTTATTTTCCACTGATCATCAAACAACCCTTCTCACTCAGTTTGGTGGAGTAGCTGCTCCTTCTCAATGGCGAAAGCTTAAGAGAAACAATAGTCTTCAACAACCAAGAAAG

mRNA sequence

AGGTTTGAACTTTTGACTCATGGTGCACTGAATGCCTTTTCACATATGGTATGGAAGGGGCTTTCTCAACCCTATATTCTCCGTATAACAGTCTGGAACTCCATGGAATTGAAAGCTATATCCAACTGCAGATTGGGTACGAGGCTTTTGCAGCTGGTCATTTTTGCGCCTTCATGATATTTAAACGGATCACATTATTGTTTGGTGGAGTAGCTGCTCCTTCTCAATGGCGAAAGCTTAAGAGAAACAATAGTCTTCAACAACCAAGAAAG

Coding sequence (CDS)

AGGTTTGAACTTTTGACTCATGGTGCACTGAATGCCTTTTCACATATGGTATGGAAGGGGCTTTCTCAACCCTATATTCTCCGTATAACAGTCTGGAACTCCATGGAATTGAAAGCTATATCCAACTGCAGATTGGGTACGAGGCTTTTGCAGCTGGTCATTTTTGCGCCTTCATGATATTTAAACGGATCACATTATTGTTTGGTGGAGTAGCTGCTCCTTCTCAATGGCGAAAGCTTAAGAGAAACAATAGTCTTCAACAACCAAGAAAG

Protein sequence

RFELLTHGALNAFSHMVWKGLSQPYILRITVWNSMELKAISNCRLGTRLLQLVIFAPS*YLNGSHYCLVE*LLLLNGESLRETIVFNNQEX
Homology
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BLAST of Chy12G210020 vs. ExPASy TrEMBL
Match: A0A1S3BD22 (putative pentatricopeptide repeat-containing protein At1g16830 OS=Cucumis melo OX=3656 GN=LOC103488546 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 9.0e-04
Identity = 24/27 (88.89%), Postives = 25/27 (92.59%), Query Frame = 0 

Query: 32  WNSMELKAISNCRLGTRLLQLVIFAPS 59
           WNSMELKAIS+CRLGTRL QLV FAPS
Sbjct: 489 WNSMELKAISSCRLGTRLSQLVFFAPS 515

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BLAST of Chy12G210020 vs. NCBI nr
Match: XP_008445574.1 (PREDICTED: putative pentatricopeptide repeat-containing protein At1g16830 [Cucumis melo] >XP_008445582.1 PREDICTED: putative pentatricopeptide repeat-containing protein At1g16830 [Cucumis melo])

HSP 1 Score: 52.8 bits (125), Expect = 1.78e-05
Identity = 30/56 (53.57%), Postives = 37/56 (66.07%), Query Frame = 0 

Query: 4   LLTHGALNAFSH-MVWKGLSQPYILRITVWNSMELKAISNCRLGTRLLQLVIFAPS 58
           LL +  ++A  H ++  GL +        WNSMELKAIS+CRLGTRL QLV FAPS
Sbjct: 466 LLNYTGVDAHIHTVIMDGLIKAD------WNSMELKAISSCRLGTRLSQLVFFAPS 515

The following BLAST results are available for this feature:
BLAST of Chy12G210020 vs.
Match NameE-valueIdentityDescription
BLAST of Chy12G210020 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3BD229.0e-0488.89putative pentatricopeptide repeat-containing protein At1g16830 OS=Cucumis melo O... [more]
BLAST of Chy12G210020 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008445574.11.78e-0553.57PREDICTED: putative pentatricopeptide repeat-containing protein At1g16830 [Cucum... [more]
BLAST of Chy12G210020 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy12G210020.1Chy12G210020.1mRNA