Chy12G209870 (gene) Cucumber (hystrix) v1

Overview


Name	Chy12G209870
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Transmembrane protein
Location	chrH12: 4560451 .. 4560845 (-)
RNA-Seq Expression	Chy12G209870
Synteny	Chy12G209870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCATTCCCGTGTCTCAGATTCCCTCTCTCGCCGCCTCCCTCATTCTTCTCCTCGCCGCACTCTCCAATGCCAGAGACCTCCGTCCATCAGAGCACGGCTTGGACTACCAAAACCCTGACGCTATCCACAACTCCTCTCCTCAGATGCAATCCTTCTTCAGAGGTAACTCCTGGTCCAACTCTGATCTCGCTCTTCCCAAGGCCATGAACACTACCCTCCCCCCACAGTGGTCCAATCGTACCCATCGCAACCGCTCTGGAGCCTCCGCTGCCGATGGAGATCACATTCGCGGCGCATTGCTTGTCGCCAGTTTGGTATGTGGAATTGTTGGCCTTTCTTTGCTGGTTGCTTCTGCGTTTATTTACTTCTTTAAGTTCAGGAAGCAGAGTAG

mRNA sequence

ATGGCCATTCCCGTGTCTCAGATTCCCTCTCTCGCCGCCTCCCTCATTCTTCTCCTCGCCGCACTCTCCAATGCCAGAGACCTCCGTCCATCAGAGCACGGCTTGGACTACCAAAACCCTGACGCTATCCACAACTCCTCTCCTCAGATGCAATCCTTCTTCAGAGGTAACTCCTGGTCCAACTCTGATCTCGCTCTTCCCAAGGCCATGAACACTACCCTCCCCCCACAGTGGTCCAATCGTACCCATCGCAACCGCTCTGGAGCCTCCGCTGCCGATGGAGATCACATTCGCGGCGCATTGCTTGTCGCCAGTTTGGAAGCAGAGTAG

Coding sequence (CDS)

ATGGCCATTCCCGTGTCTCAGATTCCCTCTCTCGCCGCCTCCCTCATTCTTCTCCTCGCCGCACTCTCCAATGCCAGAGACCTCCGTCCATCAGAGCACGGCTTGGACTACCAAAACCCTGACGCTATCCACAACTCCTCTCCTCAGATGCAATCCTTCTTCAGAGGTAACTCCTGGTCCAACTCTGATCTCGCTCTTCCCAAGGCCATGAACACTACCCTCCCCCCACAGTGGTCCAATCGTACCCATCGCAACCGCTCTGGAGCCTCCGCTGCCGATGGAGATCACATTCGCGGCGCATTGCTTGTCGCCAGTTTGGAAGCAGAGTAG

Protein sequence

MAIPVSQIPSLAASLILLLAALSNARDLRPSEHGLDYQNPDAIHNSSPQMQSFFRGNSWSNSDLALPKAMNTTLPPQWSNRTHRNRSGASAADGDHIRGALLVASLEAE*

Homology

[Close]

BLAST of Chy12G209870 vs. ExPASy TrEMBL
Match: A0A0A0LVV5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G538210 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 4.2e-48
Identity = 100/106 (94.34%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 1   MAIPVSQIPSLAASLILLLAALSNARDLRPSEHGLDYQNPDAIHNSSPQMQSFFRGNSWS 60
           MAIPVSQIPS+AA+LILLLAALSNARDLRPSEHGLDYQNPDAIH+SSPQMQSFFRGNSWS
Sbjct: 1   MAIPVSQIPSIAAALILLLAALSNARDLRPSEHGLDYQNPDAIHSSSPQMQSFFRGNSWS 60

Query: 61  NSDLALPKAMNTTLPPQWSNRTHRNRSGASAADGDHIRGALLVASL 107
           NSD+ALPKAMNT+LPPQWSNR HRNRSGASAADGDHIRGALLVASL
Sbjct: 61  NSDVALPKAMNTSLPPQWSNRAHRNRSGASAADGDHIRGALLVASL 106

[Close]

BLAST of Chy12G209870 vs. ExPASy TrEMBL
Match: A0A5D3C2L6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold178G00520 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 4.2e-40
Identity = 92/112 (82.14%), Postives = 97/112 (86.61%), Query Frame = 0


Query: 1   MAIPVSQIPSLA------ASLILLLAALSNARDLRPSEHGLDYQNPDAIHNSSPQMQSFF 60
           MAI  S IPS A      A +ILLLA LSNARDLRPSEHGLDYQNPDAI NSSPQMQSFF
Sbjct: 1   MAIHESPIPSFAVLYSSLALIILLLAPLSNARDLRPSEHGLDYQNPDAIQNSSPQMQSFF 60

Query: 61  RGNSWSNSDLALPKAMNTTLPPQWSNRTHRNRSGASAADGDHIRGALLVASL 107
           +GNSWSNSD+ALPKAMNT+LPPQW NR+HRNRSGASAA GDHIRGALLVASL
Sbjct: 61  KGNSWSNSDVALPKAMNTSLPPQWWNRSHRNRSGASAAGGDHIRGALLVASL 112

[Close]

BLAST of Chy12G209870 vs. ExPASy TrEMBL
Match: A0A1S3BC63 (uncharacterized protein LOC103488324 OS=Cucumis melo OX=3656 GN=LOC103488324 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 4.2e-40
Identity = 92/112 (82.14%), Postives = 97/112 (86.61%), Query Frame = 0


Query: 1   MAIPVSQIPSLA------ASLILLLAALSNARDLRPSEHGLDYQNPDAIHNSSPQMQSFF 60
           MAI  S IPS A      A +ILLLA LSNARDLRPSEHGLDYQNPDAI NSSPQMQSFF
Sbjct: 1   MAIHESPIPSFAVLYSSLALIILLLAPLSNARDLRPSEHGLDYQNPDAIQNSSPQMQSFF 60

Query: 61  RGNSWSNSDLALPKAMNTTLPPQWSNRTHRNRSGASAADGDHIRGALLVASL 107
           +GNSWSNSD+ALPKAMNT+LPPQW NR+HRNRSGASAA GDHIRGALLVASL
Sbjct: 61  KGNSWSNSDVALPKAMNTSLPPQWWNRSHRNRSGASAAGGDHIRGALLVASL 112

[Close]

BLAST of Chy12G209870 vs. ExPASy TrEMBL
Match: A0A6J1EH69 (uncharacterized protein LOC111434271 OS=Cucurbita moschata OX=3662 GN=LOC111434271 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 8.0e-31
Identity = 71/93 (76.34%), Postives = 81/93 (87.10%), Query Frame = 0


Query: 16  ILLLAALSNARDLRPSEHGLDYQNPDAIHNSSPQMQSFFRGNSWSNSDLALPKAMNTTLP 75
           ++ LA  SNARDLRPSEHGL+YQNP AI NSSP MQSFF+GNSWS+SD+ALPKAMNT+LP
Sbjct: 19  VIFLAGGSNARDLRPSEHGLEYQNPGAIENSSPDMQSFFKGNSWSSSDVALPKAMNTSLP 78

Query: 76  PQWSNRTHRNRSGASA--ADGDHIRGALLVASL 107
            QW NR+HR+RSGA+A    GDHIRGALLVASL
Sbjct: 79  SQWWNRSHRDRSGAAADGGGGDHIRGALLVASL 111

[Close]

BLAST of Chy12G209870 vs. ExPASy TrEMBL
Match: A0A6J1KLE3 (uncharacterized protein LOC111495232 OS=Cucurbita maxima OX=3661 GN=LOC111495232 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 5.2e-30
Identity = 70/93 (75.27%), Postives = 80/93 (86.02%), Query Frame = 0


Query: 16  ILLLAALSNARDLRPSEHGLDYQNPDAIHNSSPQMQSFFRGNSWSNSDLALPKAMNTTLP 75
           ++ LA  SNARDLRPSEHGL+YQNP AI NSSP MQSFF+GNSWS+SD+ALPKAMNT+LP
Sbjct: 18  VIFLAGGSNARDLRPSEHGLEYQNPGAIENSSPDMQSFFKGNSWSSSDVALPKAMNTSLP 77

Query: 76  PQWSNRTHRNRSGASA--ADGDHIRGALLVASL 107
            QW NR+HR+RS A+A    GDHIRGALLVASL
Sbjct: 78  SQWWNRSHRDRSEAAADGGSGDHIRGALLVASL 110

[Close]

BLAST of Chy12G209870 vs. NCBI nr
Match: XP_011659106.1 (uncharacterized protein LOC105436136 [Cucumis sativus] >KGN65923.1 hypothetical protein Csa_023164 [Cucumis sativus])

HSP 1 Score: 202 bits (513), Expect = 1.89e-64
Identity = 100/106 (94.34%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 1   MAIPVSQIPSLAASLILLLAALSNARDLRPSEHGLDYQNPDAIHNSSPQMQSFFRGNSWS 60
           MAIPVSQIPS+AA+LILLLAALSNARDLRPSEHGLDYQNPDAIH+SSPQMQSFFRGNSWS
Sbjct: 1   MAIPVSQIPSIAAALILLLAALSNARDLRPSEHGLDYQNPDAIHSSSPQMQSFFRGNSWS 60

Query: 61  NSDLALPKAMNTTLPPQWSNRTHRNRSGASAADGDHIRGALLVASL 106
           NSD+ALPKAMNT+LPPQWSNR HRNRSGASAADGDHIRGALLVASL
Sbjct: 61  NSDVALPKAMNTSLPPQWSNRAHRNRSGASAADGDHIRGALLVASL 106

[Close]

BLAST of Chy12G209870 vs. NCBI nr
Match: XP_008445240.1 (PREDICTED: uncharacterized protein LOC103488324 [Cucumis melo] >KAA0036919.1 uncharacterized protein E6C27_scaffold9475G00110 [Cucumis melo var. makuwa] >TYK05544.1 uncharacterized protein E5676_scaffold178G00520 [Cucumis melo var. makuwa])

HSP 1 Score: 175 bits (444), Expect = 7.90e-54
Identity = 92/112 (82.14%), Postives = 97/112 (86.61%), Query Frame = 0


Query: 1   MAIPVSQIPSLA------ASLILLLAALSNARDLRPSEHGLDYQNPDAIHNSSPQMQSFF 60
           MAI  S IPS A      A +ILLLA LSNARDLRPSEHGLDYQNPDAI NSSPQMQSFF
Sbjct: 1   MAIHESPIPSFAVLYSSLALIILLLAPLSNARDLRPSEHGLDYQNPDAIQNSSPQMQSFF 60

Query: 61  RGNSWSNSDLALPKAMNTTLPPQWSNRTHRNRSGASAADGDHIRGALLVASL 106
           +GNSWSNSD+ALPKAMNT+LPPQW NR+HRNRSGASAA GDHIRGALLVASL
Sbjct: 61  KGNSWSNSDVALPKAMNTSLPPQWWNRSHRNRSGASAAGGDHIRGALLVASL 112

[Close]

BLAST of Chy12G209870 vs. NCBI nr
Match: XP_038895122.1 (uncharacterized protein LOC120083432 [Benincasa hispida])

HSP 1 Score: 159 bits (403), Expect = 1.25e-47
Identity = 84/111 (75.68%), Postives = 95/111 (85.59%), Query Frame = 0


Query: 2   AIPVSQIPSLAASL----ILLLAALSNARDLRPSEHGLDYQNPDAIHNSSPQMQSFFRGN 61
           AIP SQIPS AA      ++LLA +SNARDLRPSEHGL+YQNP A+ NSSPQMQSFF+GN
Sbjct: 3   AIP-SQIPSFAAVFSSLAVILLAGISNARDLRPSEHGLEYQNPGAMENSSPQMQSFFKGN 62

Query: 62  SWSNSDLALPKAMNTTLPPQWSNRTHRNRSGASA--ADGDHIRGALLVASL 106
           SWS+SD+ALPKAMNT+LPPQW NR+HRNRSGA+A    GDHIRGALLVASL
Sbjct: 63  SWSSSDVALPKAMNTSLPPQWWNRSHRNRSGAAADGGGGDHIRGALLVASL 112

[Close]

BLAST of Chy12G209870 vs. NCBI nr
Match: KAG6583852.1 (hypothetical protein SDJN03_19784, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019473.1 hypothetical protein SDJN02_18434, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 145 bits (365), Expect = 7.25e-42
Identity = 71/93 (76.34%), Postives = 81/93 (87.10%), Query Frame = 0


Query: 16  ILLLAALSNARDLRPSEHGLDYQNPDAIHNSSPQMQSFFRGNSWSNSDLALPKAMNTTLP 75
           ++ LA  SNARDLRPSEHGL+YQNP AI NSSP MQSFF+GNSWS+SD+ALPKAMNT+LP
Sbjct: 19  VIFLAGGSNARDLRPSEHGLEYQNPGAIENSSPDMQSFFKGNSWSSSDVALPKAMNTSLP 78

Query: 76  PQWSNRTHRNRSGASA--ADGDHIRGALLVASL 106
            QW NR+HR+RSGA+A    GDHIRGALLVASL
Sbjct: 79  SQWWNRSHRDRSGAAADGGGGDHIRGALLVASL 111

[Close]

BLAST of Chy12G209870 vs. NCBI nr
Match: XP_022927447.1 (uncharacterized protein LOC111434271 [Cucurbita moschata])

HSP 1 Score: 145 bits (365), Expect = 7.25e-42
Identity = 71/93 (76.34%), Postives = 81/93 (87.10%), Query Frame = 0


Query: 16  ILLLAALSNARDLRPSEHGLDYQNPDAIHNSSPQMQSFFRGNSWSNSDLALPKAMNTTLP 75
           ++ LA  SNARDLRPSEHGL+YQNP AI NSSP MQSFF+GNSWS+SD+ALPKAMNT+LP
Sbjct: 19  VIFLAGGSNARDLRPSEHGLEYQNPGAIENSSPDMQSFFKGNSWSSSDVALPKAMNTSLP 78

Query: 76  PQWSNRTHRNRSGASA--ADGDHIRGALLVASL 106
            QW NR+HR+RSGA+A    GDHIRGALLVASL
Sbjct: 79  SQWWNRSHRDRSGAAADGGGGDHIRGALLVASL 111

The following BLAST results are available for this feature:

BLAST of Chy12G209870 vs.


Match Name	E-value	Identity	Description

BLAST of Chy12G209870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVV5	4.2e-48	94.34	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G538210 PE=4 SV=1	[more]
A0A5D3C2L6	4.2e-40	82.14	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BC63	4.2e-40	82.14	uncharacterized protein LOC103488324 OS=Cucumis melo OX=3656 GN=LOC103488324 PE=...	[more]
A0A6J1EH69	8.0e-31	76.34	uncharacterized protein LOC111434271 OS=Cucurbita moschata OX=3662 GN=LOC1114342...	[more]
A0A6J1KLE3	5.2e-30	75.27	uncharacterized protein LOC111495232 OS=Cucurbita maxima OX=3661 GN=LOC111495232...	[more]

BLAST of Chy12G209870 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011659106.1	1.89e-64	94.34	uncharacterized protein LOC105436136 [Cucumis sativus] >KGN65923.1 hypothetical ...	[more]
XP_008445240.1	7.90e-54	82.14	PREDICTED: uncharacterized protein LOC103488324 [Cucumis melo] >KAA0036919.1 unc...	[more]
XP_038895122.1	1.25e-47	75.68	uncharacterized protein LOC120083432 [Benincasa hispida]	[more]
KAG6583852.1	7.25e-42	76.34	hypothetical protein SDJN03_19784, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022927447.1	7.25e-42	76.34	uncharacterized protein LOC111434271 [Cucurbita moschata]	[more]

BLAST of Chy12G209870 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..93
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..87
None	No IPR available	PANTHER	PTHR37189:SF4	CONCANAVALIN A-LIKE LECTIN/GLUCANASE DOMAIN-CONTAINING PROTEIN-RELATED	coord: 6..106
None	No IPR available	PANTHER	PTHR37189	CONCANAVALIN A-LIKE LECTIN/GLUCANASE DOMAIN-CONTAINING PROTEIN-RELATED	coord: 6..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy12G209870.1	Chy12G209870.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane