Chy12G209530 (gene) Cucumber (hystrix) v1

Overview
NameChy12G209530
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionBEST Arabidopsis thaliana protein match is: Galact s in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
LocationchrH12: 3761892 .. 3762164 (+)
RNA-Seq ExpressionChy12G209530
SyntenyChy12G209530
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCCACTTCTCGATTGGCCAGGTTTATCAGCGAAGCTTGCCCACCTCAATTCATCTCTGTCATGAGGCGAAGAAGCCCCAAAGTTTTAGACACCATTAACGAAGAAGACCAAAGAGAAGCCCTAGCTTCCTCTTCCTCCTTCAAGATCGACAAATTCTCTGTTCCTTCACCGCCATCTCCTGATTCTTCCGCCGCCGCCATTAATTCCAAATACTTTCTCGATCAGGTCCCTGTTCCCCTGAGGCCTTTCTCCATTTTCGAGCATTGA

mRNA sequence

ATGGCAGCCACTTCTCGATTGGCCAGGTTTATCAGCGAAGCTTGCCCACCTCAATTCATCTCTGTCATGAGGCGAAGAAGCCCCAAAGTTTTAGACACCATTAACGAAGAAGACCAAAGAGAAGCCCTAGCTTCCTCTTCCTCCTTCAAGATCGACAAATTCTCTGTTCCTTCACCGCCATCTCCTGATTCTTCCGCCGCCGCCATTAATTCCAAATACTTTCTCGATCAGGTCCCTGTTCCCCTGAGGCCTTTCTCCATTTTCGAGCATTGA

Coding sequence (CDS)

ATGGCAGCCACTTCTCGATTGGCCAGGTTTATCAGCGAAGCTTGCCCACCTCAATTCATCTCTGTCATGAGGCGAAGAAGCCCCAAAGTTTTAGACACCATTAACGAAGAAGACCAAAGAGAAGCCCTAGCTTCCTCTTCCTCCTTCAAGATCGACAAATTCTCTGTTCCTTCACCGCCATCTCCTGATTCTTCCGCCGCCGCCATTAATTCCAAATACTTTCTCGATCAGGTCCCTGTTCCCCTGAGGCCTTTCTCCATTTTCGAGCATTGA

Protein sequence

MAATSRLARFISEACPPQFISVMRRRSPKVLDTINEEDQREALASSSSFKIDKFSVPSPPSPDSSAAAINSKYFLDQVPVPLRPFSIFEH*
Homology
BLAST of Chy12G209530 vs. ExPASy TrEMBL
Match: A0A0A0LYE6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G534780 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 3.0e-39
Identity = 86/90 (95.56%), Postives = 88/90 (97.78%), Query Frame = 0

Query: 1  MAATSRLARFISEACPPQFISVMRRRSPKVLDTINEEDQREALASSSSFKIDKFSVPSPP 60
          MAATSRLARFISEACPPQF+SVMRRRSP+VLDTINEEDQREAL SSSSFKIDKFSVPSPP
Sbjct: 1  MAATSRLARFISEACPPQFVSVMRRRSPRVLDTINEEDQREALVSSSSFKIDKFSVPSPP 60

Query: 61 SPDSSAAAINSKYFLDQVPVPLRPFSIFEH 91
          SPDSSAAAINSKYFLDQVPVPL PFSIFEH
Sbjct: 61 SPDSSAAAINSKYFLDQVPVPLGPFSIFEH 90

BLAST of Chy12G209530 vs. ExPASy TrEMBL
Match: A0A5A7UJX7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold480G00970 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 3.1e-36
Identity = 84/92 (91.30%), Postives = 87/92 (94.57%), Query Frame = 0

Query: 1  MAATSRLARFISEACPPQFISVMRRRSPKVLDTINEEDQREALASSSSFKIDKFSVPSPP 60
          MAATSRLARFISEACPPQF+SVMRRRSPKVLDTINEEDQRE+LASSSSFKIDKFSV SPP
Sbjct: 1  MAATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDQRESLASSSSFKIDKFSVSSPP 60

Query: 61 SPDSS--AAAINSKYFLDQVPVPLRPFSIFEH 91
          SP SS  AAA+NSKYFLDQVPVPL PFSIFEH
Sbjct: 61 SPASSAAAAAVNSKYFLDQVPVPLGPFSIFEH 92

BLAST of Chy12G209530 vs. ExPASy TrEMBL
Match: A0A314XQS6 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_10926 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 5.3e-12
Identity = 52/101 (51.49%), Postives = 63/101 (62.38%), Query Frame = 0

Query: 1  MAATSRLARFISEACPPQFISVMRRRSPKVLDTINEEDQ------REALASSSSFKIDKF 60
          M A SRLARFI+E  PPQF+SVMR R+ KVLDTINEE++       ++L SSSSFK    
Sbjct: 1  MMANSRLARFITEVAPPQFVSVMRHRTSKVLDTINEEEREYANTSNDSLISSSSFKGCAC 60

Query: 61 SVPSPPS-----PDSSAAAINSKYFLDQVPVPLRPFSIFEH 91
          S  SPPS       ++AA   SKYFL +V    R FS+  H
Sbjct: 61 STSSPPSFASAASGAAAAGTESKYFLKEVH---RAFSMLSH 98

BLAST of Chy12G209530 vs. ExPASy TrEMBL
Match: A0A5E4FYK5 (PREDICTED: galactosyltransferase family OS=Prunus dulcis OX=3755 GN=ALMOND_2B011231 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 9.0e-12
Identity = 51/99 (51.52%), Postives = 63/99 (63.64%), Query Frame = 0

Query: 3  ATSRLARFISEACPPQFISVMRRRSPKVLDTINEEDQ------REALASSSSFKIDKFSV 62
          A SRLARFI+E  PPQF+SVMR R+ KVLDTINEE++       ++L SSSS K    S 
Sbjct: 2  ANSRLARFITEVAPPQFVSVMRHRTSKVLDTINEEEREYANTSNDSLISSSSSKGCACST 61

Query: 63 PSPPS-----PDSSAAAINSKYFLDQVPVPLRPFSIFEH 91
          PSPPS       ++AA   S+YFL +V    R FS+F H
Sbjct: 62 PSPPSFASAASGAAAAGTESRYFLKEVH---RAFSMFGH 97

BLAST of Chy12G209530 vs. ExPASy TrEMBL
Match: M5WKN5 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G084800 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.0e-11
Identity = 52/99 (52.53%), Postives = 63/99 (63.64%), Query Frame = 0

Query: 3  ATSRLARFISEACPPQFISVMRRRSPKVLDTINEEDQ------REALASSSSFKIDKFSV 62
          A SRLARFI+E  PPQF+SVMR R+ KVLDTI EE++       ++L SSSS K    S 
Sbjct: 2  ANSRLARFITEVAPPQFVSVMRHRTSKVLDTIKEEEREYANTSNDSLISSSSSKGCACST 61

Query: 63 PSPPSPDSSAAA-----INSKYFLDQVPVPLRPFSIFEH 91
          PSPPS  S+A+A       SKYFL +V    R FS+F H
Sbjct: 62 PSPPSFASAASAAAAAGTESKYFLKEVH---RAFSMFGH 97

BLAST of Chy12G209530 vs. NCBI nr
Match: KGN65872.1 (hypothetical protein Csa_023250 [Cucumis sativus])

HSP 1 Score: 170 bits (430), Expect = 5.78e-53
Identity = 86/90 (95.56%), Postives = 88/90 (97.78%), Query Frame = 0

Query: 1  MAATSRLARFISEACPPQFISVMRRRSPKVLDTINEEDQREALASSSSFKIDKFSVPSPP 60
          MAATSRLARFISEACPPQF+SVMRRRSP+VLDTINEEDQREAL SSSSFKIDKFSVPSPP
Sbjct: 1  MAATSRLARFISEACPPQFVSVMRRRSPRVLDTINEEDQREALVSSSSFKIDKFSVPSPP 60

Query: 61 SPDSSAAAINSKYFLDQVPVPLRPFSIFEH 90
          SPDSSAAAINSKYFLDQVPVPL PFSIFEH
Sbjct: 61 SPDSSAAAINSKYFLDQVPVPLGPFSIFEH 90

BLAST of Chy12G209530 vs. NCBI nr
Match: KAA0054015.1 (hypothetical protein E6C27_scaffold318G00710 [Cucumis melo var. makuwa] >TYK20701.1 hypothetical protein E5676_scaffold480G00970 [Cucumis melo var. makuwa])

HSP 1 Score: 160 bits (404), Expect = 5.69e-49
Identity = 84/92 (91.30%), Postives = 87/92 (94.57%), Query Frame = 0

Query: 1  MAATSRLARFISEACPPQFISVMRRRSPKVLDTINEEDQREALASSSSFKIDKFSVPSPP 60
          MAATSRLARFISEACPPQF+SVMRRRSPKVLDTINEEDQRE+LASSSSFKIDKFSV SPP
Sbjct: 1  MAATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDQRESLASSSSFKIDKFSVSSPP 60

Query: 61 SPDSSAAA--INSKYFLDQVPVPLRPFSIFEH 90
          SP SSAAA  +NSKYFLDQVPVPL PFSIFEH
Sbjct: 61 SPASSAAAAAVNSKYFLDQVPVPLGPFSIFEH 92

BLAST of Chy12G209530 vs. NCBI nr
Match: KAG7019500.1 (hypothetical protein SDJN02_18461, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 117 bits (293), Expect = 2.19e-31
Identity = 67/89 (75.28%), Postives = 73/89 (82.02%), Query Frame = 0

Query: 1  MAATSRLARFISEACPPQFISVMRRRSPKVLDTINEEDQREALASSSSFKIDKFSVPS-- 60
          MAATSRLARFISEACPPQF+SVMRRRSPKVLDTINEED REAL+SSSS KIDKFSV S  
Sbjct: 1  MAATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDHREALSSSSSLKIDKFSVSSLP 60

Query: 61 ------PPSPDSSAAAINSKYFLDQVPVP 81
                PPSP +SAA ++SKYFL+Q   P
Sbjct: 61 STMAASPPSPATSAA-VSSKYFLNQFQWP 88

BLAST of Chy12G209530 vs. NCBI nr
Match: KAG6583880.1 (hypothetical protein SDJN03_19812, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 107 bits (268), Expect = 1.06e-27
Identity = 60/75 (80.00%), Postives = 63/75 (84.00%), Query Frame = 0

Query: 1  MAATSRLARFISEACPPQFISVMRRRSPKVLDTINEEDQREALASSSSFKIDKFSVPS-- 60
          MAATSRLARFISEACPPQF+SVMRRRSPKVLDTINEED REAL+SSSS KIDKFSV S  
Sbjct: 1  MAATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDHREALSSSSSLKIDKFSVSSLP 60

Query: 61 ------PPSPDSSAA 67
                PPSP +SAA
Sbjct: 61 STMAASPPSPATSAA 75

BLAST of Chy12G209530 vs. NCBI nr
Match: PQP93653.1 (hypothetical protein Pyn_10926 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 80.1 bits (196), Expect = 3.23e-17
Identity = 52/101 (51.49%), Postives = 63/101 (62.38%), Query Frame = 0

Query: 1  MAATSRLARFISEACPPQFISVMRRRSPKVLDTINEEDQR------EALASSSSFKIDKF 60
          M A SRLARFI+E  PPQF+SVMR R+ KVLDTINEE++       ++L SSSSFK    
Sbjct: 1  MMANSRLARFITEVAPPQFVSVMRHRTSKVLDTINEEEREYANTSNDSLISSSSFKGCAC 60

Query: 61 SVPSPPS-----PDSSAAAINSKYFLDQVPVPLRPFSIFEH 90
          S  SPPS       ++AA   SKYFL +V    R FS+  H
Sbjct: 61 STSSPPSFASAASGAAAAGTESKYFLKEVH---RAFSMLSH 98

BLAST of Chy12G209530 vs. TAIR 10
Match: AT1G30260.1 (BEST Arabidopsis thaliana protein match is: Galactosyltransferase family protein (TAIR:AT4G21060.1); Has 30 Blast hits to 30 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 61.6 bits (148), Expect = 3.7e-10
Identity = 39/73 (53.42%), Postives = 49/73 (67.12%), Query Frame = 0

Query: 3  ATSRLARFISEACPPQFISVMRRRSPKVLDTINEEDQREALAS--SSSFKIDKFSVP--S 62
          ATSRLARFI+E  PPQF++VMRRR+ KVLDTI EE++     S   SSF   K S P  S
Sbjct: 2  ATSRLARFITEVAPPQFVTVMRRRTAKVLDTIKEEEREVGTDSIFPSSFNSKKISSPFTS 61

Query: 63 PPSPDSSAAAINS 72
          P S   S+A+ ++
Sbjct: 62 PYSSSVSSASASA 74

BLAST of Chy12G209530 vs. TAIR 10
Match: AT4G21060.1 (Galactosyltransferase family protein )

HSP 1 Score: 50.1 bits (118), Expect = 1.1e-06
Identity = 25/41 (60.98%), Postives = 32/41 (78.05%), Query Frame = 0

Query: 3  ATSRLARFISEACPPQFISVMRRR--SPKVLDTINEEDQRE 42
          ATSRLARF+SE  PPQF++VMRR   + + LDTI EE+ +E
Sbjct: 2  ATSRLARFVSEVAPPQFVTVMRRHRAAKQKLDTIKEEENKE 42

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LYE63.0e-3995.56Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G534780 PE=4 SV=1[more]
A0A5A7UJX73.1e-3691.30Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A314XQS65.3e-1251.49Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_109... [more]
A0A5E4FYK59.0e-1251.52PREDICTED: galactosyltransferase family OS=Prunus dulcis OX=3755 GN=ALMOND_2B011... [more]
M5WKN52.0e-1152.53Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G084800 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KGN65872.15.78e-5395.56hypothetical protein Csa_023250 [Cucumis sativus][more]
KAA0054015.15.69e-4991.30hypothetical protein E6C27_scaffold318G00710 [Cucumis melo var. makuwa] >TYK2070... [more]
KAG7019500.12.19e-3175.28hypothetical protein SDJN02_18461, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6583880.11.06e-2780.00hypothetical protein SDJN03_19812, partial [Cucurbita argyrosperma subsp. sorori... [more]
PQP93653.13.23e-1751.49hypothetical protein Pyn_10926 [Prunus yedoensis var. nudiflora][more]
Match NameE-valueIdentityDescription
AT1G30260.13.7e-1053.42BEST Arabidopsis thaliana protein match is: Galactosyltransferase family protein... [more]
AT4G21060.11.1e-0660.98Galactosyltransferase family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35101:SF12OS02G0162600 PROTEINcoord: 2..89
NoneNo IPR availablePANTHERPTHR35101OS02G0162600 PROTEINcoord: 2..89

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy12G209530.1Chy12G209530.1mRNA