Chy12G209050 (gene) Cucumber (hystrix) v1

Overview


Name	Chy12G209050
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	PHD finger-like domain-containing protein 5B
Location	chrH12: 3330740 .. 3331191 (-)
RNA-Seq Expression	Chy12G209050
Synteny	Chy12G209050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAAGCATCATCCTGATTTGATCATGTGCAGAAAGCAGCCTGGAATTGCAATTGGCCGCCTATGTGAGAAGTGCGATGGGAAGTGTGTAATCTGTGATTCTTATGTCCGTCCCTGTACACTTGTTCGTGTTTGTGACGAATGCAATTACGGGTCTTTCCAAGGCCGTTGTGTGATCTGTGGAGGAGTAGGAATTTCAGATGCTTACTACTGCAAAGAGTGTACACAGCAGGAGAAAGATAGAGATGGATGCCCAAAGATTGTTAATTTAGGCAGTGCAAAAACAGATTTGTTCTATGAACGTAAGAAATATGGGTTCAAGAAACGATGAAGCCAAAACACTATGTAGTTATCTTCCTAAGATGGATCTTACTGTAATATGATGAATTTCTAATATCTAATCTCAAAACTCTCCTAGACATGTACGTATATGCTGATGAGTCAGAATGA

mRNA sequence

ATGGCCAAGCATCATCCTGATTTGATCATGTGCAGAAAGCAGCCTGGAATTGCAATTGGCCGCCTATGTGAGAAGTGCGATGGGAAGTGTGTAATCTGTGATTCTTATGTCCGTCCCTGTACACTTGTTCGTGTTTGTGACGAATGCAATTACGGGTCTTTCCAAGGCCGTTGTGTGATCTGTGGAGGAGTAGGAATTTCAGATGCTTACTACTGCAAAGAGTGTACACAGCAGGAGAAAGATAGAGATGGATGCCCAAAGATTGTTAATTTAGGCAGTGCAAAAACAGATTTGTTCTATGAACACATGTACGTATATGCTGATGAGTCAGAATGA

Coding sequence (CDS)

ATGGCCAAGCATCATCCTGATTTGATCATGTGCAGAAAGCAGCCTGGAATTGCAATTGGCCGCCTATGTGAGAAGTGCGATGGGAAGTGTGTAATCTGTGATTCTTATGTCCGTCCCTGTACACTTGTTCGTGTTTGTGACGAATGCAATTACGGGTCTTTCCAAGGCCGTTGTGTGATCTGTGGAGGAGTAGGAATTTCAGATGCTTACTACTGCAAAGAGTGTACACAGCAGGAGAAAGATAGAGATGGATGCCCAAAGATTGTTAATTTAGGCAGTGCAAAAACAGATTTGTTCTATGAACACATGTACGTATATGCTGATGAGTCAGAATGA

Protein sequence

MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYEHMYVYADESE*

Homology

[Close]

BLAST of Chy12G209050 vs. ExPASy Swiss-Prot
Match: P0DI19 (PHD finger-like domain-containing protein 5A OS=Arabidopsis thaliana OX=3702 GN=At2g30000 PE=3 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 1.8e-59
Identity = 100/101 (99.01%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYE 102
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYE
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYE 101

[Close]

BLAST of Chy12G209050 vs. ExPASy Swiss-Prot
Match: Q0WMV8 (PHD finger-like domain-containing protein 5B OS=Arabidopsis thaliana OX=3702 GN=At1g07170 PE=3 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 1.8e-59
Identity = 100/101 (99.01%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYE 102
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYE
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYE 101

[Close]

BLAST of Chy12G209050 vs. ExPASy Swiss-Prot
Match: Q7RTV0 (PHD finger-like domain-containing protein 5A OS=Homo sapiens OX=9606 GN=PHF5A PE=1 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 2.0e-55
Identity = 92/101 (91.09%), Postives = 97/101 (96.04%), Query Frame = 0


Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLI CRKQ G+AIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGS+QGRCVI
Sbjct: 1   MAKHHPDLIFCRKQAGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYE 102
           CGG G+SDAYYCKECT QEKDRDGCPKIVNLGS+KTDLFYE
Sbjct: 61  CGGPGVSDAYYCKECTIQEKDRDGCPKIVNLGSSKTDLFYE 101

[Close]

BLAST of Chy12G209050 vs. ExPASy Swiss-Prot
Match: P83870 (PHD finger-like domain-containing protein 5A OS=Mus musculus OX=10090 GN=Phf5a PE=1 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 2.0e-55
Identity = 92/101 (91.09%), Postives = 97/101 (96.04%), Query Frame = 0


Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLI CRKQ G+AIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGS+QGRCVI
Sbjct: 1   MAKHHPDLIFCRKQAGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYE 102
           CGG G+SDAYYCKECT QEKDRDGCPKIVNLGS+KTDLFYE
Sbjct: 61  CGGPGVSDAYYCKECTIQEKDRDGCPKIVNLGSSKTDLFYE 101

[Close]

BLAST of Chy12G209050 vs. ExPASy Swiss-Prot
Match: P83871 (PHD finger-like domain-containing protein 5A OS=Rattus norvegicus OX=10116 GN=Phf5a PE=2 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 2.0e-55
Identity = 92/101 (91.09%), Postives = 97/101 (96.04%), Query Frame = 0


Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLI CRKQ G+AIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGS+QGRCVI
Sbjct: 1   MAKHHPDLIFCRKQAGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYE 102
           CGG G+SDAYYCKECT QEKDRDGCPKIVNLGS+KTDLFYE
Sbjct: 61  CGGPGVSDAYYCKECTIQEKDRDGCPKIVNLGSSKTDLFYE 101

[Close]

BLAST of Chy12G209050 vs. ExPASy TrEMBL
Match: A0A7N2R2H0 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=3 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 3.5e-58
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYEHM 104
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYEH+
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYEHL 103

[Close]

BLAST of Chy12G209050 vs. ExPASy TrEMBL
Match: A0A4U5QH41 (Zinc finger CCCH domain-containing protein 30 OS=Populus alba OX=43335 GN=D5086_0000108950 PE=3 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 4.6e-58
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYEHM 104
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYEH+
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYEHI 103

[Close]

BLAST of Chy12G209050 vs. ExPASy TrEMBL
Match: A0A7N2LD10 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=3 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 6.0e-58
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYEH 103
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYEH
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYEH 102

[Close]

BLAST of Chy12G209050 vs. ExPASy TrEMBL
Match: A0A2P5X9G9 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA20677 PE=3 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 3.0e-57
Identity = 101/103 (98.06%), Postives = 102/103 (99.03%), Query Frame = 0


Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYEHM 104
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYE +
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERL 103

[Close]

BLAST of Chy12G209050 vs. ExPASy TrEMBL
Match: A0A6J1I5N2 (PHD finger-like domain-containing protein 5B OS=Cucurbita maxima OX=3661 GN=LOC111469455 PE=3 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 5.1e-57
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYE 102
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYE
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYE 101

[Close]

BLAST of Chy12G209050 vs. NCBI nr
Match: KAG7036993.1 (PHD finger-like domain-containing protein 5B, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 243 bits (621), Expect = 9.87e-81
Identity = 109/110 (99.09%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYEHMYVYADES 110
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYEHMYVYADE+
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYEHMYVYADEN 110

[Close]

BLAST of Chy12G209050 vs. NCBI nr
Match: PPD86829.1 (hypothetical protein GOBAR_DD16226 [Gossypium barbadense])

HSP 1 Score: 227 bits (579), Expect = 6.21e-75
Identity = 102/103 (99.03%), Postives = 102/103 (99.03%), Query Frame = 0


Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYEHM 103
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYE M
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERM 103

[Close]

BLAST of Chy12G209050 vs. NCBI nr
Match: KAG6762474.1 (hypothetical protein POTOM_032976 [Populus tomentosa])

HSP 1 Score: 227 bits (578), Expect = 9.42e-75
Identity = 105/113 (92.92%), Postives = 106/113 (93.81%), Query Frame = 0


Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYE---HMYVYADES 110
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYE   H+  Y D S
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERDHHVREYYDMS 113

[Close]

BLAST of Chy12G209050 vs. NCBI nr
Match: KAG6792993.1 (hypothetical protein POTOM_002161 [Populus tomentosa])

HSP 1 Score: 226 bits (577), Expect = 1.38e-74
Identity = 101/105 (96.19%), Postives = 103/105 (98.10%), Query Frame = 0


Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYEHMYV 105
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYE + +
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERLEI 105

[Close]

BLAST of Chy12G209050 vs. NCBI nr
Match: TKS07855.1 (Zinc finger CCCH domain-containing protein 30 [Populus alba])

HSP 1 Score: 229 bits (583), Expect = 1.77e-74
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYEHM 103
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYEH+
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYEHI 103

[Close]

BLAST of Chy12G209050 vs. TAIR 10
Match: AT1G07170.1 (PHF5-like protein )

HSP 1 Score: 229.6 bits (584), Expect = 1.3e-60
Identity = 100/101 (99.01%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYE 102
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYE
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYE 101

[Close]

BLAST of Chy12G209050 vs. TAIR 10
Match: AT1G07170.2 (PHF5-like protein )

HSP 1 Score: 229.6 bits (584), Expect = 1.3e-60
Identity = 100/101 (99.01%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYE 102
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYE
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYE 101

[Close]

BLAST of Chy12G209050 vs. TAIR 10
Match: AT1G07170.3 (PHF5-like protein )

HSP 1 Score: 229.6 bits (584), Expect = 1.3e-60
Identity = 100/101 (99.01%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYE 102
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYE
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYE 101

[Close]

BLAST of Chy12G209050 vs. TAIR 10
Match: AT2G30000.1 (PHF5-like protein )

HSP 1 Score: 229.6 bits (584), Expect = 1.3e-60
Identity = 100/101 (99.01%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYE 102
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYE
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYE 101

The following BLAST results are available for this feature:

BLAST of Chy12G209050 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0DI19	1.8e-59	99.01	PHD finger-like domain-containing protein 5A OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q0WMV8	1.8e-59	99.01	PHD finger-like domain-containing protein 5B OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q7RTV0	2.0e-55	91.09	PHD finger-like domain-containing protein 5A OS=Homo sapiens OX=9606 GN=PHF5A PE...	[more]
P83870	2.0e-55	91.09	PHD finger-like domain-containing protein 5A OS=Mus musculus OX=10090 GN=Phf5a P...	[more]
P83871	2.0e-55	91.09	PHD finger-like domain-containing protein 5A OS=Rattus norvegicus OX=10116 GN=Ph...	[more]

BLAST of Chy12G209050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7N2R2H0	3.5e-58	99.03	Uncharacterized protein OS=Quercus lobata OX=97700 PE=3 SV=1	[more]
A0A4U5QH41	4.6e-58	99.03	Zinc finger CCCH domain-containing protein 30 OS=Populus alba OX=43335 GN=D5086_...	[more]
A0A7N2LD10	6.0e-58	100.00	Uncharacterized protein OS=Quercus lobata OX=97700 PE=3 SV=1	[more]
A0A2P5X9G9	3.0e-57	98.06	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA20677 PE=3 SV...	[more]
A0A6J1I5N2	5.1e-57	100.00	PHD finger-like domain-containing protein 5B OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]

BLAST of Chy12G209050 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7036993.1	9.87e-81	99.09	PHD finger-like domain-containing protein 5B, partial [Cucurbita argyrosperma su...	[more]
PPD86829.1	6.21e-75	99.03	hypothetical protein GOBAR_DD16226 [Gossypium barbadense]	[more]
KAG6762474.1	9.42e-75	92.92	hypothetical protein POTOM_032976 [Populus tomentosa]	[more]
KAG6792993.1	1.38e-74	96.19	hypothetical protein POTOM_002161 [Populus tomentosa]	[more]
TKS07855.1	1.77e-74	99.03	Zinc finger CCCH domain-containing protein 30 [Populus alba]	[more]

BLAST of Chy12G209050 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07170.1	1.3e-60	99.01	PHF5-like protein	[more]
AT1G07170.2	1.3e-60	99.01	PHF5-like protein	[more]
AT1G07170.3	1.3e-60	99.01	PHF5-like protein	[more]
AT2G30000.1	1.3e-60	99.01	PHF5-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005345	PHF5-like	PIRSF	PIRSF016468	RDS3p	coord: 1..110 e-value: 6.0E-50 score: 166.0
IPR005345	PHF5-like	PFAM	PF03660	PHF5	coord: 1..102 e-value: 1.8E-48 score: 163.0
IPR005345	PHF5-like	PANTHER	PTHR13120	PHD FINGER-LIKE DOMAIN-CONTAINING PROTEIN 5A	coord: 1..102
None	No IPR available	PANTHER	PTHR13120:SF5	BNAC03G71910D PROTEIN	coord: 1..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy12G209050.1	Chy12G209050.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0071011	precatalytic spliceosome
cellular_component	GO:0005689	U12-type spliceosomal complex
cellular_component	GO:0005686	U2 snRNP