Chy12G209040 (gene) Cucumber (hystrix) v1

Overview
NameChy12G209040
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
Descriptionprotein PSY1-like
LocationchrH12: 3326055 .. 3327577 (-)
RNA-Seq ExpressionChy12G209040
SyntenyChy12G209040
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCTTCTTCTTCTCCTCGACTTTCCTTTTACTTCTCTTTCTTAATCCTCCTCCTCCTCGCAACCACCATGGTAGCTTCTGCCGCTCGCCATGCACCTGCAATTCCAATTTCGAGCAACAAGAGTAAGAACGAAACCCTTTCTAGTTCTTCCTTATTCACCTTTATTCATTTCTCGTCGTTTAATTTAAATTTGTCATAACCTTTTTATTTAATGTTTTACGATTTGATAGTTTAGAGAACCCGATATCTATATCAATTTTCATAAAGATAAAACTTTTGCAATGTCATTCTTGGTTTATATAATAATGGTCGAACTTGTCAAATTTTTTGTGCCAATGCGTACAAATGATAAAAAATGTCTAACCTCTCAATTTAATTTTTACAGGGAAAATAATATTTTGGTTCTTTTTATTCCAAGTTTCCTAAAGTGTTTTCAATGGTCTAAATTTACTCCTTTTATATTACTTTTCATAGATTTTAAATTTAATCATTCAAAGTTAATCATTTTTTAGAGTGTTATCAAATAATAATAAATTTTGTAAAGAAAAAATAGTATATGTATTTGAGTTCAAAAAATTTATAAAAGAAATCTAAATAGAGACAATATTTTTCGAAAATTTTATATTTCGAAAAACAAACATTGTGGTTATAATCAACAAGAAATACTATTATTTTTAAGATTTACCGATGGTATTAATAAAAAATATTCCAAAGTACATAAAATAAAACTCAAAATTAAATTAAAGTAGTATGTATTTTAGACATTATATTAATTTTAACCTGGTGTCAAAATAGGAGGTTTTGAGTAAGTGTCATATATCCTCTTTTATATATATATATGATAATTAACCCTAAGGCCTTATGTTTAATTTTTCAAGCTTTACAAATGATTAAACTTATTTTACGGATTTATTGGTAGTTTAGTATATATTTTTATGATTAATTAAAAATGTTTATATATGTAGGAAATGATGAAGAGATGATTGGGTTACAAGACTATGGTGATGCACGTGCCAATCATAGACATGATCCTCACCATCCTCTAACTGTCAACAAGGGTATGTTTAACCAAAAACATATACACATAATCGAAGAATGGAAAAGATTCTTCAACGATTTCAAGTCTCTCACTCACTCCATACAAATATAGATTATTACTCAAGGGAAGATGAAACTAATTGATATATCGTTGAATGCGTGAGATAGAAATTATTATTTATTTGTTTTTTTAATGGCTTAGATCCTGAGTCTCTAAATAAATTATTATTATTTAGGTTATTAGTGACTTTATCTATTTAAATAAATGGATAAAAACTATGTGGTGAAGTTTATTCGTACAAAAGAAAATCATCATCCATTCTCATAAACATAATAAGTAGGAGAGTTTAGCTCAACATTTAAGGAGGTTATATTTCATATATACTTACCATTATAGCAAACCCACCTAATAAAATTTATTGTTATATTAACTATTATTTGTTGATTTTTGTAGGGAACAACAAGGAATTGGATGGTTAA

mRNA sequence

ATGGCTTCTTCTTCTTCTCCTCGACTTTCCTTTTACTTCTCTTTCTTAATCCTCCTCCTCCTCGCAACCACCATGGTAGCTTCTGCCGCTCGCCATGCACCTGCAATTCCAATTTCGAGCAACAAGAGAAATGATGAAGAGATGATTGGGTTACAAGACTATGGTGATGCACGTGCCAATCATAGACATGATCCTCACCATCCTCTAACTGTCAACAAGGGGAACAACAAGGAATTGGATGGTTAA

Coding sequence (CDS)

ATGGCTTCTTCTTCTTCTCCTCGACTTTCCTTTTACTTCTCTTTCTTAATCCTCCTCCTCCTCGCAACCACCATGGTAGCTTCTGCCGCTCGCCATGCACCTGCAATTCCAATTTCGAGCAACAAGAGAAATGATGAAGAGATGATTGGGTTACAAGACTATGGTGATGCACGTGCCAATCATAGACATGATCCTCACCATCCTCTAACTGTCAACAAGGGGAACAACAAGGAATTGGATGGTTAA

Protein sequence

MASSSSPRLSFYFSFLILLLLATTMVASAARHAPAIPISSNKRNDEEMIGLQDYGDARANHRHDPHHPLTVNKGNNKELDG*
Homology
BLAST of Chy12G209040 vs. ExPASy TrEMBL
Match: A0A0A0LXN0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532270 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 3.7e-33
Identity = 77/83 (92.77%), Postives = 80/83 (96.39%), Query Frame = 0

Query: 1  MASSSS--PRLSFYFSFLILLLLATTMVASAARHAPAIPISSNKRNDEEMIGLQDYGDAR 60
          MASSSS  PRLSFYFSFLILLLLAT MVASAARHAPAIP+SSNKRND+EMIGLQDYGDAR
Sbjct: 1  MASSSSPPPRLSFYFSFLILLLLATAMVASAARHAPAIPVSSNKRNDKEMIGLQDYGDAR 60

Query: 61 ANHRHDPHHPLTVNKGNNKELDG 82
          ANHRHDPHHPL+VNKGNNKELDG
Sbjct: 61 ANHRHDPHHPLSVNKGNNKELDG 83

BLAST of Chy12G209040 vs. ExPASy TrEMBL
Match: A0A1S3C5B4 (protein PSY1-like OS=Cucumis melo OX=3656 GN=LOC103497069 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.2e-31
Identity = 72/80 (90.00%), Postives = 75/80 (93.75%), Query Frame = 0

Query: 2  ASSSSPRLSFYFSFLILLLLATTMVASAARHAPAIPISSNKRNDEEMIGLQDYGDARANH 61
          +SSSSPRLSFYFSFL+LLLL T MVASAARHAP IPISSN+RNDE MIGLQDYGDARANH
Sbjct: 3  SSSSSPRLSFYFSFLLLLLLTTAMVASAARHAPPIPISSNERNDEGMIGLQDYGDARANH 62

Query: 62 RHDPHHPLTVNKGNNKELDG 82
          RHDPHHPLTVNKGN KELDG
Sbjct: 63 RHDPHHPLTVNKGNKKELDG 82

BLAST of Chy12G209040 vs. ExPASy TrEMBL
Match: A0A6J1D9T4 (uncharacterized protein LOC111018956 OS=Momordica charantia OX=3673 GN=LOC111018956 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 5.6e-13
Identity = 53/102 (51.96%), Postives = 57/102 (55.88%), Query Frame = 0

Query: 8   RLSFYFSFLILLLLATTMVASAARHAPAIPISSNKRN----------------------- 67
           RLS YFS LILLL   ++V+SAARHAPA   S   RN                       
Sbjct: 4   RLSLYFSLLILLLATASIVSSAARHAPATS-SKLARNGGMVEIHERFAKSRVEDNSMVHH 63

Query: 68  -----DEEMIGLQDYGDARANHRHDPHHPLTVNKGNNKELDG 82
                 EEMIGL DYGD  ANH+HDPHHPL V KGNNKELDG
Sbjct: 64  RLLTGHEEMIGLHDYGDTHANHKHDPHHPLAV-KGNNKELDG 103

BLAST of Chy12G209040 vs. ExPASy TrEMBL
Match: A0A6J1K9X5 (uncharacterized protein LOC111492989 OS=Cucurbita maxima OX=3661 GN=LOC111492989 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 6.2e-12
Identity = 50/81 (61.73%), Postives = 58/81 (71.60%), Query Frame = 0

Query: 1  MASSSSPRLSFYFSFLILLLLATTMVAS-AARHAPAIPISSNKRNDEEMIGLQDYGDARA 60
          MAS S    S YFS L  LL    +VA+  AR+ PA PISS +R+D EMIGL+DYGDARA
Sbjct: 1  MASQS----SLYFSLLFFLLSTAAIVAAFEARNIPANPISSTERHD-EMIGLRDYGDARA 60

Query: 61 NHRHDPHHPLTVNKGNNKELD 81
          NHRH+PHHPL V +G  KELD
Sbjct: 61 NHRHEPHHPLGV-EGYKKELD 75

BLAST of Chy12G209040 vs. NCBI nr
Match: KGN65819.1 (hypothetical protein Csa_023229 [Cucumis sativus])

HSP 1 Score: 151 bits (381), Expect = 9.66e-46
Identity = 77/83 (92.77%), Postives = 80/83 (96.39%), Query Frame = 0

Query: 1  MASSSSP--RLSFYFSFLILLLLATTMVASAARHAPAIPISSNKRNDEEMIGLQDYGDAR 60
          MASSSSP  RLSFYFSFLILLLLAT MVASAARHAPAIP+SSNKRND+EMIGLQDYGDAR
Sbjct: 1  MASSSSPPPRLSFYFSFLILLLLATAMVASAARHAPAIPVSSNKRNDKEMIGLQDYGDAR 60

Query: 61 ANHRHDPHHPLTVNKGNNKELDG 81
          ANHRHDPHHPL+VNKGNNKELDG
Sbjct: 61 ANHRHDPHHPLSVNKGNNKELDG 83

BLAST of Chy12G209040 vs. NCBI nr
Match: XP_008457363.1 (PREDICTED: protein PSY1-like [Cucumis melo])

HSP 1 Score: 146 bits (368), Expect = 9.03e-44
Identity = 72/80 (90.00%), Postives = 75/80 (93.75%), Query Frame = 0

Query: 2  ASSSSPRLSFYFSFLILLLLATTMVASAARHAPAIPISSNKRNDEEMIGLQDYGDARANH 61
          +SSSSPRLSFYFSFL+LLLL T MVASAARHAP IPISSN+RNDE MIGLQDYGDARANH
Sbjct: 3  SSSSSPRLSFYFSFLLLLLLTTAMVASAARHAPPIPISSNERNDEGMIGLQDYGDARANH 62

Query: 62 RHDPHHPLTVNKGNNKELDG 81
          RHDPHHPLTVNKGN KELDG
Sbjct: 63 RHDPHHPLTVNKGNKKELDG 82

BLAST of Chy12G209040 vs. NCBI nr
Match: XP_022150920.1 (uncharacterized protein LOC111018956 [Momordica charantia])

HSP 1 Score: 84.3 bits (207), Expect = 5.59e-19
Identity = 53/104 (50.96%), Postives = 58/104 (55.77%), Query Frame = 0

Query: 6   SPRLSFYFSFLILLLLATTMVASAARHAPAIPISSNKRND-------------------- 65
           + RLS YFS LILLL   ++V+SAARHAPA   S   RN                     
Sbjct: 2   ASRLSLYFSLLILLLATASIVSSAARHAPATS-SKLARNGGMVEIHERFAKSRVEDNSMV 61

Query: 66  --------EEMIGLQDYGDARANHRHDPHHPLTVNKGNNKELDG 81
                   EEMIGL DYGD  ANH+HDPHHPL V KGNNKELDG
Sbjct: 62  HHRLLTGHEEMIGLHDYGDTHANHKHDPHHPLAV-KGNNKELDG 103

BLAST of Chy12G209040 vs. NCBI nr
Match: KAG6607316.1 (hypothetical protein SDJN03_00658, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 82.0 bits (201), Expect = 2.21e-18
Identity = 47/76 (61.84%), Postives = 56/76 (73.68%), Query Frame = 0

Query: 6  SPRLSFYFSFLILLLLATTMVA-SAARHAPAIPISSNKRNDEEMIGLQDYGDARANHRHD 65
          + R S YFS L  LL    +VA S AR+ PA PI+S +R+DE MIGL+DYGDARANHRH+
Sbjct: 2  ASRSSLYFSLLFFLLSTAAIVAPSEARNIPASPIASTERHDE-MIGLRDYGDARANHRHE 61

Query: 66 PHHPLTVNKGNNKELD 80
          PHHPL V +G  KELD
Sbjct: 62 PHHPLGV-EGYKKELD 75

BLAST of Chy12G209040 vs. NCBI nr
Match: XP_022998316.1 (uncharacterized protein LOC111492989 [Cucurbita maxima])

HSP 1 Score: 80.5 bits (197), Expect = 8.97e-18
Identity = 50/81 (61.73%), Postives = 58/81 (71.60%), Query Frame = 0

Query: 1  MASSSSPRLSFYFSFLILLLLATTMVAS-AARHAPAIPISSNKRNDEEMIGLQDYGDARA 60
          MAS SS     YFS L  LL    +VA+  AR+ PA PISS +R+DE MIGL+DYGDARA
Sbjct: 1  MASQSS----LYFSLLFFLLSTAAIVAAFEARNIPANPISSTERHDE-MIGLRDYGDARA 60

Query: 61 NHRHDPHHPLTVNKGNNKELD 80
          NHRH+PHHPL V +G  KELD
Sbjct: 61 NHRHEPHHPLGV-EGYKKELD 75

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LXN03.7e-3392.77Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532270 PE=4 SV=1[more]
A0A1S3C5B41.2e-3190.00protein PSY1-like OS=Cucumis melo OX=3656 GN=LOC103497069 PE=4 SV=1[more]
A0A6J1D9T45.6e-1351.96uncharacterized protein LOC111018956 OS=Momordica charantia OX=3673 GN=LOC111018... [more]
A0A6J1K9X56.2e-1261.73uncharacterized protein LOC111492989 OS=Cucurbita maxima OX=3661 GN=LOC111492989... [more]
Match NameE-valueIdentityDescription
KGN65819.19.66e-4692.77hypothetical protein Csa_023229 [Cucumis sativus][more]
XP_008457363.19.03e-4490.00PREDICTED: protein PSY1-like [Cucumis melo][more]
XP_022150920.15.59e-1950.96uncharacterized protein LOC111018956 [Momordica charantia][more]
KAG6607316.12.21e-1861.84hypothetical protein SDJN03_00658, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022998316.18.97e-1861.73uncharacterized protein LOC111492989 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..81
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 33..81

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy12G209040.1Chy12G209040.1mRNA