Chy12G208900 (gene) Cucumber (hystrix) v1

Overview


Name	Chy12G208900
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH12: 3189531 .. 3189929 (+)
RNA-Seq Expression	Chy12G208900
Synteny	Chy12G208900

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTTTAAGTTTCGGAAATAGCAATGGCCCTAAGAGTAAAGATGCAAATGCTATCACTTCTAAGCTACGTCCATCTATTAAACTGGTAAGTACATACACAGAGGAAAAAGAATTAAAAAGGTTACCAATGCCATTGATTATTTATTTAAAGCATGAAAAGGACTTTGTCGTTACTGTAGTAAATGGAATGCACAGTGAAGGCACTGTTCTGAGTGGGTCAGAAGGAACGAACGACAAAGGTACGGAAGCAACCAAAGGCAATGACAAGTGGGTAGGCAGTGGCGGAGCCGCTGAAAGCACTGCTACTTTTCTCTTCTTTTCCTTCAATTTATTCTTCATTAAATGTCGCTCTTCGCTTCGGGAAATTGCACCACATATCTTTATTCAAAGTCTCTTCTAG

mRNA sequence

TCTTTAAGTTTCGGAAATAGCAATGGCCCTAAGAGTAAAGATGCAAATGCTATCACTTCTAAGCTACGTCCATCTATTAAACTGGTAAGTACATACACAGAGGAAAAAGAATTAAAAAGGTTACCAATGCCATTGATTATTTATTTAAAGCATGAAAAGGACTTTGTCGTTACTGTAGTAAATGGAATGCACAGTGAAGGCACTGTTCTGAGTGGGTCAGAAGGAACGAACGACAAAGGTACGGAAGCAACCAAAGGCAATGACAAGTGGGTAGGCAGTGGCGGAGCCGCTGAAAGCACTGCTACTTTTCTCTTCTTTTCCTTCAATTTATTCTTCATTAAATGTCGCTCTTCGCTTCGGGAAATTGCACCACATATCTTTATTCAAAGTCTCTTCTAG

Coding sequence (CDS)

TCTTTAAGTTTCGGAAATAGCAATGGCCCTAAGAGTAAAGATGCAAATGCTATCACTTCTAAGCTACGTCCATCTATTAAACTGGTAAGTACATACACAGAGGAAAAAGAATTAAAAAGGTTACCAATGCCATTGATTATTTATTTAAAGCATGAAAAGGACTTTGTCGTTACTGTAGTAAATGGAATGCACAGTGAAGGCACTGTTCTGAGTGGGTCAGAAGGAACGAACGACAAAGGTACGGAAGCAACCAAAGGCAATGACAAGTGGGTAGGCAGTGGCGGAGCCGCTGAAAGCACTGCTACTTTTCTCTTCTTTTCCTTCAATTTATTCTTCATTAAATGTCGCTCTTCGCTTCGGGAAATTGCACCACATATCTTTATTCAAAGTCTCTTCTAG

Protein sequence

SLSFGNSNGPKSKDANAITSKLRPSIKLVSTYTEEKELKRLPMPLIIYLKHEKDFVVTVVNGMHSEGTVLSGSEGTNDKGTEATKGNDKWVGSGGAAESTATFLFFSFNLFFIKCRSSLREIAPHIFIQSLF*

Homology

[Close]

BLAST of Chy12G208900 vs. ExPASy TrEMBL
Match: A0A5D3BL63 (Putative aquaporin PIP2-5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold360G00690 PE=3 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 3.1e-29
Identity = 71/78 (91.03%), Postives = 73/78 (93.59%), Query Frame = 0


Query: 13 KDANAITSKLRPSIKLVSTYTEEKELKRLPMPLIIYLKHEKDFVVTVVNGMHSEGTVLSG 72
          K  NAITSKLRPSIKLVS YTEEKELKRLP PLIIYLKHEK+FVVTVV+GMHSEGTVLSG
Sbjct: 6  KMQNAITSKLRPSIKLVSRYTEEKELKRLPTPLIIYLKHEKEFVVTVVSGMHSEGTVLSG 65

Query: 73 SEGTNDKGTEATKGNDKW 91
          SEGTNDKGTEATKGN KW
Sbjct: 66 SEGTNDKGTEATKGNGKW 83

[Close]

BLAST of Chy12G208900 vs. ExPASy TrEMBL
Match: A0A5A7T0Q3 (Putative aquaporin PIP2-5 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold147G00320 PE=3 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 3.1e-29
Identity = 71/78 (91.03%), Postives = 73/78 (93.59%), Query Frame = 0


Query: 13 KDANAITSKLRPSIKLVSTYTEEKELKRLPMPLIIYLKHEKDFVVTVVNGMHSEGTVLSG 72
          K  NAITSKLRPSIKLVS YTEEKELKRLP PLIIYLKHEK+FVVTVV+GMHSEGTVLSG
Sbjct: 6  KMQNAITSKLRPSIKLVSRYTEEKELKRLPTPLIIYLKHEKEFVVTVVSGMHSEGTVLSG 65

Query: 73 SEGTNDKGTEATKGNDKW 91
          SEGTNDKGTEATKGN KW
Sbjct: 66 SEGTNDKGTEATKGNGKW 83

[Close]

BLAST of Chy12G208900 vs. ExPASy TrEMBL
Match: A0A0A0KDN2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G405330 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 3.5e-04
Identity = 27/50 (54.00%), Postives = 39/50 (78.00%), Query Frame = 0


Query: 45 LIIYLKHEKDFVVTVVNGMHSEGTVLSGSEGTNDKGTEATKGNDKWVGSG 95
          + + +K +   +++ V+ ++ EGTVLS SEGT+DKGTEATKGN KW+GSG
Sbjct: 1  MAVRVKMQMLSLLSYVHLLNCEGTVLSRSEGTSDKGTEATKGNGKWIGSG 50

[Close]

BLAST of Chy12G208900 vs. NCBI nr
Match: TYK00024.1 (putative aquaporin PIP2-5 [Cucumis melo var. makuwa])

HSP 1 Score: 138 bits (347), Expect = 4.35e-37
Identity = 71/78 (91.03%), Postives = 73/78 (93.59%), Query Frame = 0


Query: 13 KDANAITSKLRPSIKLVSTYTEEKELKRLPMPLIIYLKHEKDFVVTVVNGMHSEGTVLSG 72
          K  NAITSKLRPSIKLVS YTEEKELKRLP PLIIYLKHEK+FVVTVV+GMHSEGTVLSG
Sbjct: 6  KMQNAITSKLRPSIKLVSRYTEEKELKRLPTPLIIYLKHEKEFVVTVVSGMHSEGTVLSG 65

Query: 73 SEGTNDKGTEATKGNDKW 90
          SEGTNDKGTEATKGN KW
Sbjct: 66 SEGTNDKGTEATKGNGKW 83

[Close]

BLAST of Chy12G208900 vs. NCBI nr
Match: KAA0036463.1 (putative aquaporin PIP2-5 [Cucumis melo var. makuwa])

HSP 1 Score: 138 bits (347), Expect = 1.55e-36
Identity = 71/78 (91.03%), Postives = 73/78 (93.59%), Query Frame = 0


Query: 13 KDANAITSKLRPSIKLVSTYTEEKELKRLPMPLIIYLKHEKDFVVTVVNGMHSEGTVLSG 72
          K  NAITSKLRPSIKLVS YTEEKELKRLP PLIIYLKHEK+FVVTVV+GMHSEGTVLSG
Sbjct: 6  KMQNAITSKLRPSIKLVSRYTEEKELKRLPTPLIIYLKHEKEFVVTVVSGMHSEGTVLSG 65

Query: 73 SEGTNDKGTEATKGNDKW 90
          SEGTNDKGTEATKGN KW
Sbjct: 66 SEGTNDKGTEATKGNGKW 83

[Close]

BLAST of Chy12G208900 vs. NCBI nr
Match: KGN47820.1 (hypothetical protein Csa_004346 [Cucumis sativus])

HSP 1 Score: 55.8 bits (133), Expect = 1.50e-07
Identity = 27/50 (54.00%), Postives = 39/50 (78.00%), Query Frame = 0


Query: 45 LIIYLKHEKDFVVTVVNGMHSEGTVLSGSEGTNDKGTEATKGNDKWVGSG 94
          + + +K +   +++ V+ ++ EGTVLS SEGT+DKGTEATKGN KW+GSG
Sbjct: 1  MAVRVKMQMLSLLSYVHLLNCEGTVLSRSEGTSDKGTEATKGNGKWIGSG 50

The following BLAST results are available for this feature:

BLAST of Chy12G208900 vs.


Match Name	E-value	Identity	Description

BLAST of Chy12G208900 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BL63	3.1e-29	91.03	Putative aquaporin PIP2-5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A5A7T0Q3	3.1e-29	91.03	Putative aquaporin PIP2-5 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo...	[more]
A0A0A0KDN2	3.5e-04	54.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G405330 PE=4 SV=1	[more]

BLAST of Chy12G208900 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK00024.1	4.35e-37	91.03	putative aquaporin PIP2-5 [Cucumis melo var. makuwa]	[more]
KAA0036463.1	1.55e-36	91.03	putative aquaporin PIP2-5 [Cucumis melo var. makuwa]	[more]
KGN47820.1	1.50e-07	54.00	hypothetical protein Csa_004346 [Cucumis sativus]	[more]

BLAST of Chy12G208900 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy12G208900.1	Chy12G208900.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0015267	channel activity