Chy12G208690 (gene) Cucumber (hystrix) v1

Overview


Name	Chy12G208690
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	ATP synthase protein MI25
Location	chrH12: 2980829 .. 2982717 (+)
RNA-Seq Expression	Chy12G208690
Synteny	Chy12G208690

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAACTCGACTCTAGAACCTGAGGAATGGTTGCACAGCAGTAGTAAGGGCGTTAAGATCGGAGCTTTTTGTAGTGCTAGCAGTAATGCAAGTCAATGAATCCCATCCCCTATCAAGTTCAGTGCTTACGCCCCTTTGGAGATAGTCAGAATATCGAGACTGAAAAGAGGCAGAAAGAGAAAGATAGGCTTTTCAATCTTCTTTGAACCTACTATTTGGAAGAAATCCTTCCTTCTTAGTAGCTCTTTTCTTGAAAGTTCTTCAGATCAAACACTATTTTGAGATGTTAGGAGCGAGACCGCATACTAAGAAAGAGAGGGGCGCGCTAGCCTAGAGCTAGAATAATATTAACAAGGTTAGGGGGCTGAAAAGCTATTGTTTGTTGTCTACTTCACGAGCCTGAAGAGCCCCGTTCTCTAACTTCCTTTCTTTCATCCGTCCACGAGGCTGTAAAAAAGATAGGGGCGCACTATCGAGTGGGAGTTGTTTCGGTTGTATGCCATGAGGTCCCTATAGACAAGGGGACAAGTGAATCATCGCTTTTGGGTGCAGGCAGCCCTCTACCATCCATTTTATTGCATTCCATCGTCTCGTATTGCTTTACTAAGCCATATCAGACCAGATACATCTATTGAGTGAGAGAAAGGAAGAAAACTCTCAATATTCTTCATTTTTCTATTGATAGCAGTCGAACGGACTACTATAGTGAGTCTAGTGACTACATCAGTCGAGTTGAGTCAAAAGGTATGGTATAGCAGCCTTTCCGAGCGAGCCTATGGGATTTCCTGTAAACCCCCTAGATGTGGTAAATGGAGGATATTAGGGAAATCAGTGAGTGGAGATTCCCCTGCAAAGAGCCGGATGAGGGGAGACCTTCACATCCGGTTTGGAAGGTGGGGATATCCCGACCCTACTATCATTATGACTTTGCAATCTTACTTGGTGTAACTCTATTTGTGATCTTTTCTCGTATGTGGGACTTTCTTTCTTTTTGGGTAGATAATCGATCGTCTTTCATTTTGATAATGAGTCCTTTTTATAATAATAAGTAAATAAGAAAATCTGGAGGTTATGCAATAGACCGTGTTGGAGAGACTGAGGAAGAAAGGGAACTTCAAGACTCATAAGTGCTCTTTCAATTTCATTCTCTCTCTCAAATTTCATTGATCCTCAATACTCTTTGCGCCTTCTTCAGATCAACCACTATTTTGACTAGGCAGGATCTCTGCGAAGCTACAAGATGCCTGGTAAGCAAGCAAGGACTTATGTAGGCGCCAACTCCAAGTTCTTTCTCTTCTTTCTTTTTGATTTAGACTTGCTTGGCCTTCAGGGCCTTTCTTGCTGGGTGAGCGCATTTGATTATCAAGTCCTTTCCTAAACCACTTCCCGTTTAGTTGCTGAAATCTCGAGAAAAGCTTGATAAATGAGATGGAGATCCACGAATATGCAGGCTAGAAACATGCTATTTGCTGCTATTCTATCTATTTGTGCATTAAGTTCGATGAAGATCTCAATCTATAATGAAGAAATGATAGTAGCGAGTTCTTTTATAGGCTTTATTATATTAAGTTGGAAGAGTTTAGGTAAGACTTTCAAAGTGACTCTCGACTGAAGAATCCAGGCTACTGCTATTCAGGAAGAATCGCAGCAATTTCCCATTCCTAATGAAGTCATTCCAGAGGAATCCAATGAAGAACAACGATTACTTAGGATCAGTTTGTGAATTTAGGGCATCGTAGTCGAATCATTACCAATGACGCGCTATGCGCCTAAGTGTGAAAAGACAGTGCAAGCTTTCTTATGCCAAAACCTAAATGTTAAGTCAGCAACACTTCCAAATGCCACTTCTTCCCGTCGCTTCCGTCTTCAGGACGATCTAGTCGCAG

mRNA sequence

ATGGGAAACTCGACTCTAGAACCTGAGGAATGGTTGCACAGCAGTAGTAAGGGCGTTAAGATCGGAGCTTTTTGTAGTGCTAGCATCGAACGGACTACTATAGTGAGTCTAGTGACTACATCAGTCGAGTTGAGTCAAAAGGTATGGTATAGCAGCCTTTCCGAGCGAGCCTATGGGATTTCCTGTAAACCCCCTAGATGTGGTAAATGGAGGATATTAGGGAAATCAGTGAGTGGAGATTCCCCTGCAAAGAGCCGGATGAGGGGAGACCTTCACATCCGGTTTGGAAGATCAACCACTATTTTGACTAGGCAGGATCTCTGCGAAGCTACAAGATGCCTGGGCATCGTAGTCGAATCATTACCAATGACGCGCTATGCGCCTAAGTGTGAAAAGACAGTGCAAGCTTTCTTATGCCAAAACCTAAATGTTAAGTCAGCAACACTTCCAAATGCCACTTCTTCCCGTCGCTTCCGTCTTCAGGACGATCTAGTCGCAG

Coding sequence (CDS)

ATGGGAAACTCGACTCTAGAACCTGAGGAATGGTTGCACAGCAGTAGTAAGGGCGTTAAGATCGGAGCTTTTTGTAGTGCTAGCATCGAACGGACTACTATAGTGAGTCTAGTGACTACATCAGTCGAGTTGAGTCAAAAGGTATGGTATAGCAGCCTTTCCGAGCGAGCCTATGGGATTTCCTGTAAACCCCCTAGATGTGGTAAATGGAGGATATTAGGGAAATCAGTGAGTGGAGATTCCCCTGCAAAGAGCCGGATGAGGGGAGACCTTCACATCCGGTTTGGAAGATCAACCACTATTTTGACTAGGCAGGATCTCTGCGAAGCTACAAGATGCCTGGGCATCGTAGTCGAATCATTACCAATGACGCGCTATGCGCCTAAGTGTGAAAAGACAGTGCAAGCTTTCTTATGCCAAAACCTAAATGTTAAGTCAGCAACACTTCCAAATGCCACTTCTTCCCGTCGCTTCCGTCTTCAGGACGATCTAGTCGCAG

Protein sequence

MGNSTLEPEEWLHSSSKGVKIGAFCSASIERTTIVSLVTTSVELSQKVWYSSLSERAYGISCKPPRCGKWRILGKSVSGDSPAKSRMRGDLHIRFGRSTTILTRQDLCEATRCLGIVVESLPMTRYAPKCEKTVQAFLCQNLNVKSATLPNATSSRRFRLQDDLVAX

Homology

[Close]

BLAST of Chy12G208690 vs. ExPASy Swiss-Prot
Match: P09003 (ATP synthase protein MI25 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 3.3e-17
Identity = 44/53 (83.02%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 112 RCLGIVVESLPMTRYAPKCEKTVQAFLCQNLNVKSATLPNATSSRRFRLQDDL 165
           R  G VVESLPM R APKCEKTVQA LC+NLNVKSATLPNATSSRR RLQDD+
Sbjct: 98  RICGTVVESLPMARCAPKCEKTVQALLCRNLNVKSATLPNATSSRRIRLQDDI 150

[Close]

BLAST of Chy12G208690 vs. ExPASy Swiss-Prot
Match: Q04613 (ATP synthase protein MI25 OS=Arabidopsis thaliana OX=3702 GN=AtMg00640 PE=1 SV=2)

HSP 1 Score: 83.2 bits (204), Expect = 3.1e-15
Identity = 42/54 (77.78%), Postives = 43/54 (79.63%), Query Frame = 0


Query: 112 RCLGIVVESLPMTRYAPKCEKTVQAFLCQNLNVKSATLPNATSSRRFRLQDDLV 166
           R  G VVESLPM R APKCEKTVQA LC+NLNVK ATL NA SSRR R QDDLV
Sbjct: 98  RICGTVVESLPMARCAPKCEKTVQALLCRNLNVKLATLTNAISSRRIRFQDDLV 151

[Close]

BLAST of Chy12G208690 vs. ExPASy Swiss-Prot
Match: P68537 (ATP synthase protein MI25 OS=Triticum timopheevii OX=4570 PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 3.1e-15
Identity = 42/54 (77.78%), Postives = 44/54 (81.48%), Query Frame = 0


Query: 112 RCLGIVVESLPMTRYAPKCEKTVQAFLCQNLNVKSATLPNATSSRRFRLQDDLV 166
           R    VVESLP  R APKCEKTVQA LC+NLNVKSATL NATSSRR RLQDD+V
Sbjct: 98  RICSTVVESLPTARCAPKCEKTVQALLCRNLNVKSATLLNATSSRRIRLQDDIV 151

[Close]

BLAST of Chy12G208690 vs. ExPASy Swiss-Prot
Match: P68538 (ATP synthase protein MI25 OS=Triticum aestivum OX=4565 PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 3.1e-15
Identity = 42/54 (77.78%), Postives = 44/54 (81.48%), Query Frame = 0


Query: 112 RCLGIVVESLPMTRYAPKCEKTVQAFLCQNLNVKSATLPNATSSRRFRLQDDLV 166
           R    VVESLP  R APKCEKTVQA LC+NLNVKSATL NATSSRR RLQDD+V
Sbjct: 98  RICSTVVESLPTARCAPKCEKTVQALLCRNLNVKSATLLNATSSRRIRLQDDIV 151

[Close]

BLAST of Chy12G208690 vs. ExPASy Swiss-Prot
Match: P09004 (ATP synthase protein MI25 OS=Zea mays OX=4577 PE=2 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 5.3e-15
Identity = 41/49 (83.67%), Postives = 43/49 (87.76%), Query Frame = 0


Query: 117 VVESLPMTRYAPKCEKTVQAFLCQNLNVKSATLPNATSSRRFRLQDDLV 166
           VVESLP  R APKCEKTVQA LC+NLNVKSATL NATSSRR RLQDD+V
Sbjct: 107 VVESLPAARCAPKCEKTVQALLCRNLNVKSATLLNATSSRRIRLQDDIV 155

[Close]

BLAST of Chy12G208690 vs. ExPASy TrEMBL
Match: G3EIX7 (ATP synthase protein MI25 OS=Cucumis sativus OX=3659 GN=atp4 PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 3.4e-17
Identity = 48/54 (88.89%), Postives = 49/54 (90.74%), Query Frame = 0


Query: 112 RCLGIVVESLPMTRYAPKCEKTVQAFLCQNLNVKSATLPNATSSRRFRLQDDLV 166
           R  G VVESLPM RYAPKCEKTVQAFLC+NLNVKSATLPNATSSRR RLQDDLV
Sbjct: 98  RICGTVVESLPMARYAPKCEKTVQAFLCRNLNVKSATLPNATSSRRIRLQDDLV 151

[Close]

BLAST of Chy12G208690 vs. ExPASy TrEMBL
Match: A0A7D5Y129 (ATP synthase protein MI25 OS=Luffa acutangula OX=56866 GN=atp4 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.7e-16
Identity = 47/54 (87.04%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 112 RCLGIVVESLPMTRYAPKCEKTVQAFLCQNLNVKSATLPNATSSRRFRLQDDLV 166
           R  G VVESLPM RYAPKCEKTVQA LC+NLNVKSATLPNATSSRR RLQDDLV
Sbjct: 98  RICGTVVESLPMARYAPKCEKTVQALLCRNLNVKSATLPNATSSRRIRLQDDLV 151

[Close]

BLAST of Chy12G208690 vs. ExPASy TrEMBL
Match: A0A5A7T1A4 (ATP synthase protein MI25 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold48322G00020 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.7e-16
Identity = 47/54 (87.04%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 112 RCLGIVVESLPMTRYAPKCEKTVQAFLCQNLNVKSATLPNATSSRRFRLQDDLV 166
           R  G VVESLPM RYAPKCEKTVQA LC+NLNVKSATLPNATSSRR RLQDDLV
Sbjct: 225 RICGTVVESLPMARYAPKCEKTVQALLCRNLNVKSATLPNATSSRRIRLQDDLV 278

[Close]

BLAST of Chy12G208690 vs. ExPASy TrEMBL
Match: G3EU34 (ATP synthase protein MI25 OS=Cucumis melo subsp. melo OX=412675 GN=atp4 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.7e-16
Identity = 47/54 (87.04%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 112 RCLGIVVESLPMTRYAPKCEKTVQAFLCQNLNVKSATLPNATSSRRFRLQDDLV 166
           R  G VVESLPM RYAPKCEKTVQA LC+NLNVKSATLPNATSSRR RLQDDLV
Sbjct: 98  RICGTVVESLPMARYAPKCEKTVQALLCRNLNVKSATLPNATSSRRIRLQDDLV 151

[Close]

BLAST of Chy12G208690 vs. ExPASy TrEMBL
Match: A0A3Q9CTL6 (ATP synthase protein MI25 OS=Cucumis melo var. momordica OX=2034244 GN=atp4 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.7e-16
Identity = 47/54 (87.04%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 112 RCLGIVVESLPMTRYAPKCEKTVQAFLCQNLNVKSATLPNATSSRRFRLQDDLV 166
           R  G VVESLPM RYAPKCEKTVQA LC+NLNVKSATLPNATSSRR RLQDDLV
Sbjct: 98  RICGTVVESLPMARYAPKCEKTVQALLCRNLNVKSATLPNATSSRRIRLQDDLV 151

[Close]

BLAST of Chy12G208690 vs. NCBI nr
Match: YP_004849325.1 (ATPase subunit 4 [Cucumis sativus] >ADZ10752.1 ATPase subunit 4 [Cucumis sativus])

HSP 1 Score: 97.8 bits (242), Expect = 6.84e-22
Identity = 48/54 (88.89%), Postives = 49/54 (90.74%), Query Frame = 0


Query: 112 RCLGIVVESLPMTRYAPKCEKTVQAFLCQNLNVKSATLPNATSSRRFRLQDDLV 165
           R  G VVESLPM RYAPKCEKTVQAFLC+NLNVKSATLPNATSSRR RLQDDLV
Sbjct: 98  RICGTVVESLPMARYAPKCEKTVQAFLCRNLNVKSATLPNATSSRRIRLQDDLV 151

[Close]

BLAST of Chy12G208690 vs. NCBI nr
Match: KAG8363187.1 (hypothetical protein BUALT_BualtMtG0007200 [Buddleja alternifolia])

HSP 1 Score: 94.4 bits (233), Expect = 3.50e-21
Identity = 47/54 (87.04%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 112 RCLGIVVESLPMTRYAPKCEKTVQAFLCQNLNVKSATLPNATSSRRFRLQDDLV 165
           R  G VVESLPM R APKCEKTVQAFLC+NLNVKSATLPNATSSRR RLQDDLV
Sbjct: 40  RICGTVVESLPMARCAPKCEKTVQAFLCRNLNVKSATLPNATSSRRIRLQDDLV 93

[Close]

BLAST of Chy12G208690 vs. NCBI nr
Match: WP_207387063.1 (ATPase B chain family protein [Candidatus Frankia meridionalis])

HSP 1 Score: 95.5 bits (236), Expect = 4.53e-21
Identity = 47/54 (87.04%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 112 RCLGIVVESLPMTRYAPKCEKTVQAFLCQNLNVKSATLPNATSSRRFRLQDDLV 165
           R  G VVESLPM RYAPKCEKTVQA LC+NLNVKSATLPNATSSRR RLQDDLV
Sbjct: 91  RICGTVVESLPMARYAPKCEKTVQALLCRNLNVKSATLPNATSSRRIRLQDDLV 144

[Close]

BLAST of Chy12G208690 vs. NCBI nr
Match: AEN56119.1 (ATPase subunit 4 [Cucumis melo subsp. melo] >AZP40278.1 ATPase subunit 4 [Cucumis melo var. momordica])

HSP 1 Score: 95.5 bits (236), Expect = 5.34e-21
Identity = 47/54 (87.04%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 112 RCLGIVVESLPMTRYAPKCEKTVQAFLCQNLNVKSATLPNATSSRRFRLQDDLV 165
           R  G VVESLPM RYAPKCEKTVQA LC+NLNVKSATLPNATSSRR RLQDDLV
Sbjct: 98  RICGTVVESLPMARYAPKCEKTVQALLCRNLNVKSATLPNATSSRRIRLQDDLV 151

[Close]

BLAST of Chy12G208690 vs. NCBI nr
Match: YP_009913609.1 (ATPase subunit 4 [Luffa acutangula] >QLJ93001.1 ATPase subunit 4 [Luffa acutangula])

HSP 1 Score: 95.5 bits (236), Expect = 5.34e-21
Identity = 47/54 (87.04%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 112 RCLGIVVESLPMTRYAPKCEKTVQAFLCQNLNVKSATLPNATSSRRFRLQDDLV 165
           R  G VVESLPM RYAPKCEKTVQA LC+NLNVKSATLPNATSSRR RLQDDLV
Sbjct: 98  RICGTVVESLPMARYAPKCEKTVQALLCRNLNVKSATLPNATSSRRIRLQDDLV 151

[Close]

BLAST of Chy12G208690 vs. TAIR 10
Match: ATMG00640.1 (hydrogen ion transporting ATP synthases, rotational mechanism;zinc ion binding )

HSP 1 Score: 87.8 bits (216), Expect = 8.9e-18
Identity = 44/54 (81.48%), Postives = 45/54 (83.33%), Query Frame = 0


Query: 112 RCLGIVVESLPMTRYAPKCEKTVQAFLCQNLNVKSATLPNATSSRRFRLQDDLV 166
           R  G VVESLPM R APKCEKTVQA LC+NLNVKSATL NATSSRR R QDDLV
Sbjct: 98  RICGTVVESLPMARCAPKCEKTVQALLCRNLNVKSATLTNATSSRRIRFQDDLV 151

The following BLAST results are available for this feature:

BLAST of Chy12G208690 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P09003	3.3e-17	83.02	ATP synthase protein MI25 OS=Nicotiana tabacum OX=4097 PE=2 SV=1	[more]
Q04613	3.1e-15	77.78	ATP synthase protein MI25 OS=Arabidopsis thaliana OX=3702 GN=AtMg00640 PE=1 SV=2	[more]
P68537	3.1e-15	77.78	ATP synthase protein MI25 OS=Triticum timopheevii OX=4570 PE=3 SV=1	[more]
P68538	3.1e-15	77.78	ATP synthase protein MI25 OS=Triticum aestivum OX=4565 PE=3 SV=1	[more]
P09004	5.3e-15	83.67	ATP synthase protein MI25 OS=Zea mays OX=4577 PE=2 SV=1	[more]

BLAST of Chy12G208690 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
G3EIX7	3.4e-17	88.89	ATP synthase protein MI25 OS=Cucumis sativus OX=3659 GN=atp4 PE=3 SV=1	[more]
A0A7D5Y129	1.7e-16	87.04	ATP synthase protein MI25 OS=Luffa acutangula OX=56866 GN=atp4 PE=3 SV=1	[more]
A0A5A7T1A4	1.7e-16	87.04	ATP synthase protein MI25 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo...	[more]
G3EU34	1.7e-16	87.04	ATP synthase protein MI25 OS=Cucumis melo subsp. melo OX=412675 GN=atp4 PE=3 SV=...	[more]
A0A3Q9CTL6	1.7e-16	87.04	ATP synthase protein MI25 OS=Cucumis melo var. momordica OX=2034244 GN=atp4 PE=3...	[more]

BLAST of Chy12G208690 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_004849325.1	6.84e-22	88.89	ATPase subunit 4 [Cucumis sativus] >ADZ10752.1 ATPase subunit 4 [Cucumis sativus...	[more]
KAG8363187.1	3.50e-21	87.04	hypothetical protein BUALT_BualtMtG0007200 [Buddleja alternifolia]	[more]
WP_207387063.1	4.53e-21	87.04	ATPase B chain family protein [Candidatus Frankia meridionalis]	[more]
AEN56119.1	5.34e-21	87.04	ATPase subunit 4 [Cucumis melo subsp. melo] >AZP40278.1 ATPase subunit 4 [Cucumi...	[more]
YP_009913609.1	5.34e-21	87.04	ATPase subunit 4 [Luffa acutangula] >QLJ93001.1 ATPase subunit 4 [Luffa acutangu...	[more]

BLAST of Chy12G208690 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00640.1	8.9e-18	81.48	hydrogen ion transporting ATP synthases, rotational mechanism;zinc ion binding	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008688	ATP synthase, F0 complex, subunit B/MI25	PFAM	PF05405	Mt_ATP-synt_B	coord: 114..165 e-value: 2.2E-9 score: 37.1
None	No IPR available	PANTHER	PTHR37774:SF4	ATP SYNTHASE PROTEIN MI25-RELATED	coord: 112..165
IPR044988	ATP synthase, F0 complex, subunit MI25, plants	PANTHER	PTHR37774	ATP SYNTHASE PROTEIN MI25-RELATED	coord: 112..165

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy12G208690.1	Chy12G208690.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015986	ATP synthesis coupled proton transport
cellular_component	GO:0000276	mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
molecular_function	GO:0015078	proton transmembrane transporter activity