Chy12G208610 (gene) Cucumber (hystrix) v1

Overview
NameChy12G208610
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
Description4-hydroxy-tetrahydrodipicolinate synthase
LocationchrH12: 2970147 .. 2970896 (-)
RNA-Seq ExpressionChy12G208610
SyntenyChy12G208610
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAATGGAGAACGATAGAAGGCCTGGAAGGAGCGACGCTCGTTTATCCATGGAGGAAGAAAGAGAAATGGAGGCCAAAACTCGAGAGTATTTCAATGGTGTAGCACCCAAACGCCACACTAAGCCTCAGCGCAGCGAGTTCTCTGCTCATTACGTCGATAAAGTAAATGATGAGGACAATTACATTCCTGAACTCGCCGAGTTTCAGCGCCTTGAATCTGATCCTCACGAGGTTAATTAGTTTACTTCATTATGCATGCTTTCAGCTAGTGGGGATTATCGATTCCATTCTTTAGGTCTCTGATTTTTTTCCAGCACACCAGTTGTGTGTTGAGACGTATATATATTGAAGAAATTTGTGGAGAAATTGAATTTTACTTTGAAATTTTTAGCAGAGACTTACTTATGATGGCCGTAACGGCAAGATCTCTGAGGAATTTGTGGAGACAAAGTATTATGATGATCTCAATTGTGTAGACAAACAGCACCACACGGTAATTCTCTACTTCGTCGTCCTATCGATCGATCGATCTGGCTGATCTGTGTGTGTGTGTGTTCACTAACGGAAGAAGGTGAATTTTGATCTCAGACAGGAACAGGATTCATAAAAATGGAGAATGGAGATTGCACAGGTTTTAGACTCGCACCAGATTCTGCAGATGCCGGTTGCTGCCATGGCTCTTGTAGGGGTAATCCGGCGACTAACGACTGGATTCCGGCCAGTAACGATCTGGTAAAATTTCCATGA

mRNA sequence

ATGGCAATGGAGAACGATAGAAGGCCTGGAAGGAGCGACGCTCGTTTATCCATGGAGGAAGAAAGAGAAATGGAGGCCAAAACTCGAGAGTATTTCAATGGTGTAGCACCCAAACGCCACACTAAGCCTCAGCGCAGCGAGTTCTCTGCTCATTACGTCGATAAAGTAAATGATGAGGACAATTACATTCCTGAACTCGCCGAGTTTCAGCGCCTTGAATCTGATCCTCACGAGAGACTTACTTATGATGGCCGTAACGGCAAGATCTCTGAGGAATTTGTGGAGACAAAGTATTATGATGATCTCAATTGTGTAGACAAACAGCACCACACGACAGGAACAGGATTCATAAAAATGGAGAATGGAGATTGCACAGGTTTTAGACTCGCACCAGATTCTGCAGATGCCGGTTGCTGCCATGGCTCTTGTAGGGGTAATCCGGCGACTAACGACTGGATTCCGGCCAGTAACGATCTGGTAAAATTTCCATGA

Coding sequence (CDS)

ATGGCAATGGAGAACGATAGAAGGCCTGGAAGGAGCGACGCTCGTTTATCCATGGAGGAAGAAAGAGAAATGGAGGCCAAAACTCGAGAGTATTTCAATGGTGTAGCACCCAAACGCCACACTAAGCCTCAGCGCAGCGAGTTCTCTGCTCATTACGTCGATAAAGTAAATGATGAGGACAATTACATTCCTGAACTCGCCGAGTTTCAGCGCCTTGAATCTGATCCTCACGAGAGACTTACTTATGATGGCCGTAACGGCAAGATCTCTGAGGAATTTGTGGAGACAAAGTATTATGATGATCTCAATTGTGTAGACAAACAGCACCACACGACAGGAACAGGATTCATAAAAATGGAGAATGGAGATTGCACAGGTTTTAGACTCGCACCAGATTCTGCAGATGCCGGTTGCTGCCATGGCTCTTGTAGGGGTAATCCGGCGACTAACGACTGGATTCCGGCCAGTAACGATCTGGTAAAATTTCCATGA

Protein sequence

MAMENDRRPGRSDARLSMEEEREMEAKTREYFNGVAPKRHTKPQRSEFSAHYVDKVNDEDNYIPELAEFQRLESDPHERLTYDGRNGKISEEFVETKYYDDLNCVDKQHHTTGTGFIKMENGDCTGFRLAPDSADAGCCHGSCRGNPATNDWIPASNDLVKFP*
Homology
BLAST of Chy12G208610 vs. ExPASy TrEMBL
Match: A0A0A0M0Q2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G528510 PE=4 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 5.3e-87
Identity = 157/161 (97.52%), Postives = 157/161 (97.52%), Query Frame = 0

Query: 2   AMENDRRPGRSDARLSMEEEREMEAKTREYFNGVAPKRHTKPQRSEFSAHYVDKVNDEDN 61
           AMENDRRPGRSDARLSMEEEREMEAKTREYFNGVAPKRHTKPQRSEFSAHYVDK NDEDN
Sbjct: 50  AMENDRRPGRSDARLSMEEEREMEAKTREYFNGVAPKRHTKPQRSEFSAHYVDKGNDEDN 109

Query: 62  YIPELAEFQRLESDPHERLTYDGRNGKISEEFVETKYYDDLNCVDKQHHTTGTGFIKMEN 121
           YIPELAEFQRLESDPHERLTYDGRNGKISEEFVETKYYDDLNCVDKQHHTTGTGFIKMEN
Sbjct: 110 YIPELAEFQRLESDPHERLTYDGRNGKISEEFVETKYYDDLNCVDKQHHTTGTGFIKMEN 169

Query: 122 GDCTGFRLAPDSADAGCCHGSCRGNPATNDWIPASNDLVKF 163
           GDC GFRLAPDSADAGCCHGSCRGNPATNDWIPASNDL  F
Sbjct: 170 GDCKGFRLAPDSADAGCCHGSCRGNPATNDWIPASNDLGHF 210

BLAST of Chy12G208610 vs. ExPASy TrEMBL
Match: A0A5D3BE87 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G001400 PE=4 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 9.9e-86
Identity = 155/161 (96.27%), Postives = 156/161 (96.89%), Query Frame = 0

Query: 3   MENDRRPGRSDARLSMEEEREMEAKTREYFNGVAPKRHTKPQRSEFSAHYVDKVNDEDNY 62
           MENDRRPGRSDARLSMEEEREMEAKTREYFNGVA KRHTKPQRSEFSAHYVDKVNDEDNY
Sbjct: 1   MENDRRPGRSDARLSMEEEREMEAKTREYFNGVATKRHTKPQRSEFSAHYVDKVNDEDNY 60

Query: 63  IPELAEFQRLESDPHERLTYDGRNGKISEEFVETKYYDDLNCVDKQHHTTGTGFIKMENG 122
           IPELA+FQRLESDPHERLTYDGRNGKISEEFVETKYYDDLNCVDKQHHTTGTGFIKMENG
Sbjct: 61  IPELAKFQRLESDPHERLTYDGRNGKISEEFVETKYYDDLNCVDKQHHTTGTGFIKMENG 120

Query: 123 DCTGFRLAPDSADAGCCHGSCRGNPATNDWIPASNDLVKFP 164
           DC GFRLAPDSA A CCHGSCRGNPATNDWIPASND VKFP
Sbjct: 121 DCKGFRLAPDSAAADCCHGSCRGNPATNDWIPASNDPVKFP 161

BLAST of Chy12G208610 vs. ExPASy TrEMBL
Match: A0A5A7SMD8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold848G00400 PE=4 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 1.2e-83
Identity = 152/156 (97.44%), Postives = 152/156 (97.44%), Query Frame = 0

Query: 3   MENDRRPGRSDARLSMEEEREMEAKTREYFNGVAPKRHTKPQRSEFSAHYVDKVNDEDNY 62
           MENDRRPGRSDARLSMEEEREMEAKTREYFNGVA KRHTKPQRSEFSAHYVDKVNDEDNY
Sbjct: 1   MENDRRPGRSDARLSMEEEREMEAKTREYFNGVATKRHTKPQRSEFSAHYVDKVNDEDNY 60

Query: 63  IPELAEFQRLESDPHERLTYDGRNGKISEEFVETKYYDDLNCVDKQHHTTGTGFIKMENG 122
           IPELAEFQRLESDPHERLTYDGRNGKISEEFVETKYYDDLNCVDKQHHTTGTGFIKMENG
Sbjct: 61  IPELAEFQRLESDPHERLTYDGRNGKISEEFVETKYYDDLNCVDKQHHTTGTGFIKMENG 120

Query: 123 DCTGFRLAPDSADAGCCHGSCRGNPATNDWIPASND 159
           DC GFRLAPDSA A CCHGSCRGNPATNDWIPASND
Sbjct: 121 DCKGFRLAPDSAAADCCHGSCRGNPATNDWIPASND 156

BLAST of Chy12G208610 vs. ExPASy TrEMBL
Match: A0A1S3C6Q6 (uncharacterized protein LOC103497099 isoform X4 OS=Cucumis melo OX=3656 GN=LOC103497099 PE=4 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 3.5e-83
Identity = 151/156 (96.79%), Postives = 152/156 (97.44%), Query Frame = 0

Query: 3   MENDRRPGRSDARLSMEEEREMEAKTREYFNGVAPKRHTKPQRSEFSAHYVDKVNDEDNY 62
           MENDRRPGRSDARLSMEEEREMEAKTREYFNGVA KRHTKPQRSEFSAHYVDKVNDEDNY
Sbjct: 1   MENDRRPGRSDARLSMEEEREMEAKTREYFNGVATKRHTKPQRSEFSAHYVDKVNDEDNY 60

Query: 63  IPELAEFQRLESDPHERLTYDGRNGKISEEFVETKYYDDLNCVDKQHHTTGTGFIKMENG 122
           IPELA+FQRLESDPHERLTYDGRNGKISEEFVETKYYDDLNCVDKQHHTTGTGFIKMENG
Sbjct: 61  IPELAKFQRLESDPHERLTYDGRNGKISEEFVETKYYDDLNCVDKQHHTTGTGFIKMENG 120

Query: 123 DCTGFRLAPDSADAGCCHGSCRGNPATNDWIPASND 159
           DC GFRLAPDSA A CCHGSCRGNPATNDWIPASND
Sbjct: 121 DCKGFRLAPDSAAADCCHGSCRGNPATNDWIPASND 156

BLAST of Chy12G208610 vs. ExPASy TrEMBL
Match: A0A1S3C5E6 (uncharacterized protein LOC103497099 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103497099 PE=4 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 3.5e-83
Identity = 151/156 (96.79%), Postives = 152/156 (97.44%), Query Frame = 0

Query: 3   MENDRRPGRSDARLSMEEEREMEAKTREYFNGVAPKRHTKPQRSEFSAHYVDKVNDEDNY 62
           MENDRRPGRSDARLSMEEEREMEAKTREYFNGVA KRHTKPQRSEFSAHYVDKVNDEDNY
Sbjct: 1   MENDRRPGRSDARLSMEEEREMEAKTREYFNGVATKRHTKPQRSEFSAHYVDKVNDEDNY 60

Query: 63  IPELAEFQRLESDPHERLTYDGRNGKISEEFVETKYYDDLNCVDKQHHTTGTGFIKMENG 122
           IPELA+FQRLESDPHERLTYDGRNGKISEEFVETKYYDDLNCVDKQHHTTGTGFIKMENG
Sbjct: 61  IPELAKFQRLESDPHERLTYDGRNGKISEEFVETKYYDDLNCVDKQHHTTGTGFIKMENG 120

Query: 123 DCTGFRLAPDSADAGCCHGSCRGNPATNDWIPASND 159
           DC GFRLAPDSA A CCHGSCRGNPATNDWIPASND
Sbjct: 121 DCKGFRLAPDSAAADCCHGSCRGNPATNDWIPASND 156

BLAST of Chy12G208610 vs. NCBI nr
Match: XP_011658480.2 (uncharacterized protein LOC101210530 isoform X4 [Cucumis sativus] >KGN65786.1 hypothetical protein Csa_023205 [Cucumis sativus])

HSP 1 Score: 328 bits (840), Expect = 2.95e-112
Identity = 157/161 (97.52%), Postives = 157/161 (97.52%), Query Frame = 0

Query: 2   AMENDRRPGRSDARLSMEEEREMEAKTREYFNGVAPKRHTKPQRSEFSAHYVDKVNDEDN 61
           AMENDRRPGRSDARLSMEEEREMEAKTREYFNGVAPKRHTKPQRSEFSAHYVDK NDEDN
Sbjct: 50  AMENDRRPGRSDARLSMEEEREMEAKTREYFNGVAPKRHTKPQRSEFSAHYVDKGNDEDN 109

Query: 62  YIPELAEFQRLESDPHERLTYDGRNGKISEEFVETKYYDDLNCVDKQHHTTGTGFIKMEN 121
           YIPELAEFQRLESDPHERLTYDGRNGKISEEFVETKYYDDLNCVDKQHHTTGTGFIKMEN
Sbjct: 110 YIPELAEFQRLESDPHERLTYDGRNGKISEEFVETKYYDDLNCVDKQHHTTGTGFIKMEN 169

Query: 122 GDCTGFRLAPDSADAGCCHGSCRGNPATNDWIPASNDLVKF 162
           GDC GFRLAPDSADAGCCHGSCRGNPATNDWIPASNDL  F
Sbjct: 170 GDCKGFRLAPDSADAGCCHGSCRGNPATNDWIPASNDLGHF 210

BLAST of Chy12G208610 vs. NCBI nr
Match: XP_004154227.2 (uncharacterized protein LOC101210530 isoform X2 [Cucumis sativus])

HSP 1 Score: 327 bits (838), Expect = 7.59e-112
Identity = 156/160 (97.50%), Postives = 157/160 (98.12%), Query Frame = 0

Query: 2   AMENDRRPGRSDARLSMEEEREMEAKTREYFNGVAPKRHTKPQRSEFSAHYVDKVNDEDN 61
           AMENDRRPGRSDARLSMEEEREMEAKTREYFNGVAPKRHTKPQRSEFSAHYVDK NDEDN
Sbjct: 50  AMENDRRPGRSDARLSMEEEREMEAKTREYFNGVAPKRHTKPQRSEFSAHYVDKGNDEDN 109

Query: 62  YIPELAEFQRLESDPHERLTYDGRNGKISEEFVETKYYDDLNCVDKQHHTTGTGFIKMEN 121
           YIPELAEFQRLESDPHERLTYDGRNGKISEEFVETKYYDDLNCVDKQHHTTGTGFIKMEN
Sbjct: 110 YIPELAEFQRLESDPHERLTYDGRNGKISEEFVETKYYDDLNCVDKQHHTTGTGFIKMEN 169

Query: 122 GDCTGFRLAPDSADAGCCHGSCRGNPATNDWIPASNDLVK 161
           GDC GFRLAPDSADAGCCHGSCRGNPATNDWIPASNDL +
Sbjct: 170 GDCKGFRLAPDSADAGCCHGSCRGNPATNDWIPASNDLAE 209

BLAST of Chy12G208610 vs. NCBI nr
Match: TYJ97334.1 (uncharacterized protein E5676_scaffold194G001400 [Cucumis melo var. makuwa])

HSP 1 Score: 323 bits (829), Expect = 1.67e-111
Identity = 155/161 (96.27%), Postives = 156/161 (96.89%), Query Frame = 0

Query: 3   MENDRRPGRSDARLSMEEEREMEAKTREYFNGVAPKRHTKPQRSEFSAHYVDKVNDEDNY 62
           MENDRRPGRSDARLSMEEEREMEAKTREYFNGVA KRHTKPQRSEFSAHYVDKVNDEDNY
Sbjct: 1   MENDRRPGRSDARLSMEEEREMEAKTREYFNGVATKRHTKPQRSEFSAHYVDKVNDEDNY 60

Query: 63  IPELAEFQRLESDPHERLTYDGRNGKISEEFVETKYYDDLNCVDKQHHTTGTGFIKMENG 122
           IPELA+FQRLESDPHERLTYDGRNGKISEEFVETKYYDDLNCVDKQHHTTGTGFIKMENG
Sbjct: 61  IPELAKFQRLESDPHERLTYDGRNGKISEEFVETKYYDDLNCVDKQHHTTGTGFIKMENG 120

Query: 123 DCTGFRLAPDSADAGCCHGSCRGNPATNDWIPASNDLVKFP 163
           DC GFRLAPDSA A CCHGSCRGNPATNDWIPASND VKFP
Sbjct: 121 DCKGFRLAPDSAAADCCHGSCRGNPATNDWIPASNDPVKFP 161

BLAST of Chy12G208610 vs. NCBI nr
Match: XP_004145260.1 (uncharacterized protein LOC101210530 isoform X3 [Cucumis sativus])

HSP 1 Score: 322 bits (824), Expect = 1.47e-110
Identity = 156/161 (96.89%), Postives = 156/161 (96.89%), Query Frame = 0

Query: 3   MENDRRPGRSDARLSMEEEREMEAKTREYFNGVAPKRHTKPQRSEFSAHYVDKVNDEDNY 62
           MENDRRPGRSDARLSMEEEREMEAKTREYFNGVAPKRHTKPQRSEFSAHYVDK NDEDNY
Sbjct: 1   MENDRRPGRSDARLSMEEEREMEAKTREYFNGVAPKRHTKPQRSEFSAHYVDKGNDEDNY 60

Query: 63  IPELAEFQRLESDPHE-RLTYDGRNGKISEEFVETKYYDDLNCVDKQHHTTGTGFIKMEN 122
           IPELAEFQRLESDPHE RLTYDGRNGKISEEFVETKYYDDLNCVDKQHHTTGTGFIKMEN
Sbjct: 61  IPELAEFQRLESDPHEQRLTYDGRNGKISEEFVETKYYDDLNCVDKQHHTTGTGFIKMEN 120

Query: 123 GDCTGFRLAPDSADAGCCHGSCRGNPATNDWIPASNDLVKF 162
           GDC GFRLAPDSADAGCCHGSCRGNPATNDWIPASNDL  F
Sbjct: 121 GDCKGFRLAPDSADAGCCHGSCRGNPATNDWIPASNDLGHF 161

BLAST of Chy12G208610 vs. NCBI nr
Match: XP_004145259.1 (uncharacterized protein LOC101210530 isoform X1 [Cucumis sativus])

HSP 1 Score: 321 bits (822), Expect = 3.77e-110
Identity = 155/160 (96.88%), Postives = 156/160 (97.50%), Query Frame = 0

Query: 3   MENDRRPGRSDARLSMEEEREMEAKTREYFNGVAPKRHTKPQRSEFSAHYVDKVNDEDNY 62
           MENDRRPGRSDARLSMEEEREMEAKTREYFNGVAPKRHTKPQRSEFSAHYVDK NDEDNY
Sbjct: 1   MENDRRPGRSDARLSMEEEREMEAKTREYFNGVAPKRHTKPQRSEFSAHYVDKGNDEDNY 60

Query: 63  IPELAEFQRLESDPHE-RLTYDGRNGKISEEFVETKYYDDLNCVDKQHHTTGTGFIKMEN 122
           IPELAEFQRLESDPHE RLTYDGRNGKISEEFVETKYYDDLNCVDKQHHTTGTGFIKMEN
Sbjct: 61  IPELAEFQRLESDPHEQRLTYDGRNGKISEEFVETKYYDDLNCVDKQHHTTGTGFIKMEN 120

Query: 123 GDCTGFRLAPDSADAGCCHGSCRGNPATNDWIPASNDLVK 161
           GDC GFRLAPDSADAGCCHGSCRGNPATNDWIPASNDL +
Sbjct: 121 GDCKGFRLAPDSADAGCCHGSCRGNPATNDWIPASNDLAE 160

BLAST of Chy12G208610 vs. TAIR 10
Match: AT4G37300.1 (maternal effect embryo arrest 59 )

HSP 1 Score: 102.8 bits (255), Expect = 2.6e-22
Identity = 65/160 (40.62%), Postives = 92/160 (57.50%), Query Frame = 0

Query: 8   RPGRSDARLSMEEEREMEAKTREYFNGVAPKRHTKPQRSE------FSAHYVDKVNDEDN 67
           +P RSD     E++ +   + R  F+ +APKR TKP RSE      FSA   DK+ D   
Sbjct: 5   KPSRSDEISDPEQQIKNANQIRADFDSLAPKRPTKPTRSEPGFPGSFSAS--DKITDH-- 64

Query: 68  YIPELAEFQRLESDPHERLTYDGRNGKISEEFVETKYYDDLNCVDKQHHTTGTGFI---K 127
             PE  +FQ L+S  H ++  +G +  + +EF+ET+YY +L  +DKQHHTTG+GFI   K
Sbjct: 65  --PEADKFQSLQSQTHGKVLGEGDSSAVQDEFLETEYYSNLTAIDKQHHTTGSGFINVVK 124

Query: 128 MENGDCTGFRLAPDSADAGCCHGSCRGNPATNDWIPASND 159
            +NG+ +    A    D G      R NPATN+WIPA+ +
Sbjct: 125 EDNGEESEAVTAAAIGDGG-EKAVYRSNPATNEWIPATEE 157

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0M0Q25.3e-8797.52Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G528510 PE=4 SV=1[more]
A0A5D3BE879.9e-8696.27Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7SMD81.2e-8397.44Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A1S3C6Q63.5e-8396.79uncharacterized protein LOC103497099 isoform X4 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A1S3C5E63.5e-8396.79uncharacterized protein LOC103497099 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
Match NameE-valueIdentityDescription
XP_011658480.22.95e-11297.52uncharacterized protein LOC101210530 isoform X4 [Cucumis sativus] >KGN65786.1 hy... [more]
XP_004154227.27.59e-11297.50uncharacterized protein LOC101210530 isoform X2 [Cucumis sativus][more]
TYJ97334.11.67e-11196.27uncharacterized protein E5676_scaffold194G001400 [Cucumis melo var. makuwa][more]
XP_004145260.11.47e-11096.89uncharacterized protein LOC101210530 isoform X3 [Cucumis sativus][more]
XP_004145259.13.77e-11096.88uncharacterized protein LOC101210530 isoform X1 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
AT4G37300.12.6e-2240.63maternal effect embryo arrest 59 [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..47
NoneNo IPR availablePANTHERPTHR34686:SF5OS05G0451300 PROTEINcoord: 3..161
NoneNo IPR availablePANTHERPTHR34686MATERNAL EFFECT EMBRYO ARREST PROTEINcoord: 3..161

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy12G208610.1Chy12G208610.1mRNA