Chy12G208110 (gene) Cucumber (hystrix) v1

Overview
NameChy12G208110
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH12: 2494396 .. 2495583 (+)
RNA-Seq ExpressionChy12G208110
SyntenyChy12G208110
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAATCCTCGTGCCCAACCTTTCTGTCGTCAAACCACCACGTGCCCCAGCCTTGCGTCGTCGAACACCACCGTCATTTTGCTTGTCGAACAGCTTCGCGTGAAAAGCTTTGACTGTCGTTGTGCTTTGACCGCCTAAAAAGCTTTGACCTCGTGTTGCCGATCGCCGAACAGCTTCGACCGCCGTTGTGTTTGCCACCACCGTCAGGTAAGCTCATTTTTCAACCACTGTTTGTCATCTGCGCTTGTTCAATAATGATGTATTTTGTTTCTGTATTTCTTTTCTCTGTTTTTTGTTATAAGTTTGTCTTTGTGGAAAATATGTATAATGCAAAATATTCTTCAACTTACGGTAGTAGATTTTTCATAGACAACATTTTGATGAGTTTCATTTGCTTGCAAGTAGTGGTTAACTGAGGACTCAAACTTCTTTTATTAATTAGTGTTTTAGCCATAAATGGGTATGATATTAAAGTGAAAATTTTGGAACGATAAAATAGTTTTGATTGTTTCTAGAGATAAGATTTTAGTAGAAAATCCTTAAGATTCTAAAGCATAAAATATTATGTTAGTAGTAAGGTATATAAAGCAAAATATTCTTAACTTACAGTAGTAGATTTTTCATATATAACATTTTGATGACTTTCATTTGCTTGCAAAAAGGGGTTAACTGAGCACTCAAACATCTTTTAATTAGTATTTTAGCCATAAATGGGTATGATGTTAAAGTGAAAAATTTGGAACGATAAAATAATTTCGATTGTTTCTAGAGATAAGATTTTAGTAGAGAATCCTTAAGATTCTAAAGCATAAAATATTATGTTAGTAGTAAGGTGTTTAAGACTTCGAAAGGGATGGAGAATCGTACCATTGAGTTCTTTGCAGCCTGAGTTATTGAACAATAGTTTGAACTATTTTACTTATTACCATTAGTTGGAGAACTGTAGTTCAACATTTTGTTTGTCCATTTTCATTCTTCGGTCTCAAGTGACTATAGTTATTAATTTTAATGTTTTGTGTCTTTGTAGATACGTTCGTGCATATATGCATTTTGATTATCTACTCTTTTGATTTGATTGTATACTCTTTTGTTTTGATCATCAAGCTCGGATCTGGTTAGTTCGTGGCCAGATTTGCATTTGAAGTGCCACCCATTGAACACCTTAACTAATAAACGCACATAATAAATGT

mRNA sequence

AAATCCTCGTGCCCAACCTTTCTGTCGTCAAACCACCACGTGCCCCAGCCTTGCGTCGTCGAACACCACCGTCATTTTGCTTGTCGAACAGCTTCGCGTGAAAAGCTTTGACTGTCGTTGTGCTTTGACCGCCTAAAAAGCTTTGACCTCGTGTTGCCGATCGCCGAACAGCTTCGACCGCCGTTGTGTTTGCCACCACCCTCGGATCTGGTTAGTTCGTGGCCAGATTTGCATTTGAAGTGCCACCCATTGAACACCTTAACTAATAAACGCACATAATAAATGT

Coding sequence (CDS)

AAATCCTCGTGCCCAACCTTTCTGTCGTCAAACCACCACGTGCCCCAGCCTTGCGTCGTCGAACACCACCGTCATTTTGCTTGTCGAACAGCTTCGCGTGAAAAGCTTTGACTGTCGTTGTGCTTTGACCGCCTAAAAAGCTTTGACCTCGTGTTGCCGATCGCCGAACAGCTTCGACCGCCGTTGTGTTTGCCACCACCCTCGGATCTGGTTAGTTCGTGGCCAGATTTGCATTTGAAGTGCCACCCATTGAACACCTTAACTAATAAACGCACATAATAAATGT

Protein sequence

KSSCPTFLSSNHHVPQPCVVEHHRHFACRTASREKL*LSLCFDRLKSFDLVLPIAEQLRPPLCLPPPSDLVSSWPDLHLKCHPLNTLTNKRT**MX
Homology
[Close]
BLAST of Chy12G208110 vs. ExPASy TrEMBL
Match: A0A0A0LA50 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G353940 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 6.1e-19
Identity = 46/50 (92.00%), Postives = 47/50 (94.00%), Query Frame = 0 

Query: 42 FDRLKSFDLVLPIAEQLRPPLCLPPPSDLVSSWPDLHLKCHPLNTLTNKR 92
          FDR+K FDLVL IAEQLRPPLCLPPPSDLVSSWPDLHLKCHPLN LTNKR
Sbjct: 7  FDRVKRFDLVLSIAEQLRPPLCLPPPSDLVSSWPDLHLKCHPLNALTNKR 56

[Close]
BLAST of Chy12G208110 vs. NCBI nr
Match: KAE8650647.1 (hypothetical protein Csa_009761, partial [Cucumis sativus])

HSP 1 Score: 121 bits (304), Expect = 1.16e-33
Identity = 63/91 (69.23%), Postives = 66/91 (72.53%), Query Frame = 0 

Query: 1  KSSCPTFLSSNHHVPQPCVVEHHRHFACRTASREKL*LSLCFDRLKSFDLVLPIAEQLRP 60
          KSSCPTFLSSNHHVP                  E+L +   FDR+K FDLVL IAEQLRP
Sbjct: 1  KSSCPTFLSSNHHVPNLASSN-----TTVILLAEQLRVK-SFDRVKRFDLVLSIAEQLRP 60

Query: 61 PLCLPPPSDLVSSWPDLHLKCHPLNTLTNKR 91
          PLCLPPPSDLVSSWPDLHLKCHPLN LTNKR
Sbjct: 61 PLCLPPPSDLVSSWPDLHLKCHPLNALTNKR 85

The following BLAST results are available for this feature:
BLAST of Chy12G208110 vs.
Match NameE-valueIdentityDescription
BLAST of Chy12G208110 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LA506.1e-1992.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G353940 PE=4 SV=1[more]
BLAST of Chy12G208110 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8650647.11.16e-3369.23hypothetical protein Csa_009761, partial [Cucumis sativus][more]
BLAST of Chy12G208110 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy12G208110.1Chy12G208110.1mRNA