Chy12G208090 (gene) Cucumber (hystrix) v1

Overview
NameChy12G208090
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH12: 2481704 .. 2482131 (-)
RNA-Seq ExpressionChy12G208090
SyntenyChy12G208090
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAATCCCAAAAGGGGTGGAGGAAACGGGGACAAGAAGAGAATTTGGGAAAAGGGAATTGGAGTTTGATGATTGTGAAGAGGAGAAGCGGTTCAAAAAGGGAATTTGAGATCGGAGAAGGGTGGAAGCAACAGATCTCCTATCGGAAGAAGAGGGAGAAGAGAAGAATAAAGATGAAAAATTGGAAAAGAAATGGCGGTATAATGGGGTTTGCAAAAGGAAATTAAGGGAAAATGGAGTCAATTTGAGGGAAAATTACCGGAAAAATGGCTGCTGGTTCTCTCTGTCTTCTCGTTCAACTGCTTGGCCTTGGCTGGCCCTCCAATGCCGTCCACGCGGCTTTTAGAAGTATCATTTTTATTACAACTTTACCCCCACCTTCAAAGTTCTTACTTTCCTTCCTTACCAATTCTTTTCAAATCCTTTTAG

mRNA sequence

GAAATCCCAAAAGGGGTGGAGGAAACGGGGACAAGAAGAGAATTTGGGAAAAGGGAATTGGAGTTTGATGATTGTGAAGAGGAGAAGCGGTTCAAAAAGGGAATTTGAGATCGGAGAAGGGTGGAAGCAACAGATCTCCTATCGGAAGAAGAGGGAGAAGAGAAGAATAAAGATGAAAAATTGGAAAAGAAATGGCGGTATAATGGGGTTTGCAAAAGGAAATTAAGGGAAAATGGAGTCAATTTGAGGGAAAATTACCGGAAAAATGGCTGCTGGTTCTCTCTGTCTTCTCGTTCAACTGCTTGGCCTTGGCTGGCCCTCCAATGCCGTCCACGCGGCTTTTAGAAGTATCATTTTTATTACAACTTTACCCCCACCTTCAAAGTTCTTACTTTCCTTCCTTACCAATTCTTTTCAAATCCTTTTAG

Coding sequence (CDS)

GAAATCCCAAAAGGGGTGGAGGAAACGGGGACAAGAAGAGAATTTGGGAAAAGGGAATTGGAGTTTGATGATTGTGAAGAGGAGAAGCGGTTCAAAAAGGGAATTTGAGATCGGAGAAGGGTGGAAGCAACAGATCTCCTATCGGAAGAAGAGGGAGAAGAGAAGAATAAAGATGAAAAATTGGAAAAGAAATGGCGGTATAATGGGGTTTGCAAAAGGAAATTAAGGGAAAATGGAGTCAATTTGAGGGAAAATTACCGGAAAAATGGCTGCTGGTTCTCTCTGTCTTCTCGTTCAACTGCTTGGCCTTGGCTGGCCCTCCAATGCCGTCCACGCGGCTTTTAGAAGTATCATTTTTATTACAACTTTACCCCCACCTTCAAAGTTCTTACTTTCCTTCCTTACCAATTCTTTTCAAATCCTTTTAG

Protein sequence

EIPKGVEETGTRREFGKRELEFDDCEEEKRFKKGI*DRRRVEATDLLSEEEGEEKNKDEKLEKKWRYNGVCKRKLRENGVNLRENYRKNGCWFSLSSRSTAWPWLALQCRPRGF*KYHFYYNFTPTFKVLTFLPYQFFSNPFX
Homology
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BLAST of Chy12G208090 vs. NCBI nr
Match: KAE8653257.1 (hypothetical protein Csa_023934, partial [Cucumis sativus])

HSP 1 Score: 138 bits (347), Expect = 9.44e-39
Identity = 78/138 (56.52%), Postives = 89/138 (64.49%), Query Frame = 0 

Query: 1   EIPKGVEETGTRREFGKRELEFDDCEEEKRFKKGI*DRRRVEATDLLSEEEGEEKNKDEK 60
           EIPKGVEETGTRREFGK              K+    +R  E  +   ++    K ++++
Sbjct: 1   EIPKGVEETGTRREFGKGNWSLMIV------KRRSGSKREFEIGEGWKQQISYRKKREKR 60

Query: 61  L--EKKWRYNG----VCKRKLRENGVNLRENYRKNGCWFSLSSRSTAWPWLALQCRPRGF 120
               K W+ NG    VCKR+LRENGVNLRENYRKNGCWFSLSSRSTAWPWLALQCRPRGF
Sbjct: 61  RIKMKNWKRNGGIMGVCKRELRENGVNLRENYRKNGCWFSLSSRSTAWPWLALQCRPRGF 120

Query: 121 *KYHFYYNFTPTFKVLTF 132
             Y FYY  TP  K L F
Sbjct: 121 YNYQFYYTSTPPSKFLLF 132

The following BLAST results are available for this feature:
BLAST of Chy12G208090 vs.
Match NameE-valueIdentityDescription
BLAST of Chy12G208090 vs.
Match NameE-valueIdentityDescription
BLAST of Chy12G208090 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8653257.19.44e-3956.52hypothetical protein Csa_023934, partial [Cucumis sativus][more]
BLAST of Chy12G208090 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy12G208090.1Chy12G208090.1mRNA